Wall clock time and date at job start Tue Mar 31 2020 13:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00340 * 2 1 4 4 C 1.50701 * 109.47122 * 269.99989 * 3 2 1 5 5 H 1.07998 * 119.99857 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00334 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00026 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47308 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47200 * 120.00159 * 8 6 4 11 11 H 1.48497 * 109.47271 * 240.00073 * 8 6 4 12 12 C 1.34782 * 119.99516 * 180.02562 * 2 1 3 13 13 O 1.21592 * 119.99741 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00089 * 359.97438 * 12 2 1 15 15 C 1.39950 * 119.99543 * 184.58840 * 14 12 2 16 16 C 1.38860 * 120.07478 * 324.91523 * 15 14 12 17 17 C 1.38113 * 119.92963 * 180.02562 * 16 15 14 18 18 C 1.38274 * 120.07156 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.93081 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.46901 * 90.00224 * 19 18 17 21 21 C 1.46502 * 119.99820 * 90.00081 * 20 19 18 22 22 C 1.34775 * 120.00035 * 270.00284 * 20 19 18 23 23 O 1.21517 * 119.99756 * 359.97438 * 22 20 19 24 24 O 1.34635 * 120.00344 * 180.02562 * 22 20 19 25 25 C 1.38283 * 120.13933 * 0.23779 * 18 17 16 26 26 C 1.38107 * 120.06855 * 359.48666 * 25 18 17 27 27 H 1.09001 * 109.46753 * 270.00124 * 1 2 3 28 28 H 1.08995 * 109.47020 * 29.99545 * 1 2 3 29 29 H 1.08997 * 109.47730 * 149.99931 * 1 2 3 30 30 H 1.09004 * 109.47239 * 30.00120 * 3 2 1 31 31 H 1.09003 * 109.47365 * 149.99951 * 3 2 1 32 32 H 0.96996 * 120.00170 * 179.97438 * 7 6 4 33 33 H 0.96998 * 120.00318 * 4.59220 * 14 12 2 34 34 H 1.07999 * 120.03315 * 359.97438 * 16 15 14 35 35 H 1.08007 * 119.96246 * 179.97438 * 17 16 15 36 36 H 1.08998 * 109.47121 * 330.00230 * 19 18 17 37 37 H 1.08998 * 109.46969 * 210.00451 * 19 18 17 38 38 H 1.09003 * 109.46607 * 269.99780 * 21 20 19 39 39 H 1.08992 * 109.47209 * 30.00321 * 21 20 19 40 40 H 1.09005 * 109.46657 * 150.00195 * 21 20 19 41 41 H 0.96695 * 117.00427 * 179.97438 * 24 22 20 42 42 H 1.08001 * 119.96077 * 179.72217 * 25 18 17 43 43 H 1.08000 * 120.03598 * 180.24937 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5535 3.6180 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.8589 2.4175 -4.3673 10 1 2.7989 4.7381 -3.6669 11 1 4.8993 3.5261 -3.6676 12 6 2.1388 -1.1673 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4648 -2.3345 -0.0005 15 6 2.1613 -3.5445 0.0959 16 6 3.4054 -3.6812 -0.5056 17 6 4.0898 -4.8770 -0.4090 18 6 3.5373 -5.9375 0.2853 19 6 4.2866 -7.2410 0.3882 20 7 5.1380 -7.2219 1.5803 21 6 4.6155 -7.7035 2.8614 22 6 6.4020 -6.7614 1.4983 23 8 6.8355 -6.3624 0.4355 24 8 7.1847 -6.7443 2.5937 25 6 2.2961 -5.8063 0.8808 26 6 1.6092 -4.6114 0.7926 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1383 0.5138 32 1 4.0304 4.4438 -0.8504 33 1 0.4972 -2.3358 -0.0674 34 1 3.8369 -2.8537 -1.0490 35 1 5.0573 -4.9840 -0.8769 36 1 4.9060 -7.3750 -0.4986 37 1 3.5757 -8.0638 0.4625 38 1 4.1551 -6.8753 3.4003 39 1 3.8709 -8.4789 2.6817 40 1 5.4319 -8.1144 3.4554 41 1 8.0838 -6.4055 2.4856 42 1 1.8653 -6.6379 1.4185 43 1 0.6417 -4.5083 1.2613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830831137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:45 Heat of formation + Delta-G solvation = -96.403043 kcal Electronic energy + Delta-G solvation = -26643.529025 eV Core-core repulsion = 22688.432560 eV Total energy + Delta-G solvation = -3955.096465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75346 -41.34636 -39.83642 -37.54784 -36.80364 -36.58319 -35.72165 -34.64407 -31.87124 -31.71504 -29.73577 -28.06771 -27.43608 -26.76232 -25.01064 -23.85279 -22.96602 -21.62151 -20.95352 -19.38170 -19.06829 -18.71574 -18.41608 -18.27477 -17.48091 -16.87014 -16.67989 -16.43957 -16.08273 -15.86153 -15.57935 -14.92283 -14.80985 -14.56732 -14.43377 -14.25361 -14.08440 -13.92873 -13.57541 -13.50220 -13.27406 -13.17821 -12.98378 -12.85834 -12.63942 -12.53235 -12.48371 -12.23554 -12.09586 -11.73696 -11.68000 -11.35080 -10.92989 -10.67076 -9.87259 -9.83036 -9.58142 -8.96630 -8.24525 -6.39649 0.22880 0.50755 1.33538 1.36704 1.47098 1.49242 1.72361 1.78490 2.14832 2.36802 2.90323 3.02597 3.06751 3.43314 3.90944 3.93891 4.11183 4.26223 4.29047 4.39350 4.50326 4.59242 4.62661 4.71062 4.75994 4.78895 4.83033 4.94472 5.02291 5.11196 5.17766 5.32463 5.41387 5.42653 5.51840 5.60759 5.67427 5.76836 5.79705 6.02924 6.06998 6.13444 6.25323 6.69152 7.02825 7.27616 7.37377 7.60018 8.82129 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.002801 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.417690 B = 9993.669005 C =10875.136616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.275 3.725 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.265 1.265 11 H -0.283 1.283 12 C 0.690 3.310 13 O -0.623 6.623 14 N -0.675 5.675 15 C 0.158 3.842 16 C -0.157 4.157 17 C -0.090 4.090 18 C -0.137 4.137 19 C 0.176 3.824 20 N -0.590 5.590 21 C 0.079 3.921 22 C 0.653 3.347 23 O -0.618 6.618 24 O -0.521 6.521 25 C -0.067 4.067 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.032 0.968 31 H -0.003 1.003 32 H 0.268 0.732 33 H 0.421 0.579 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.055 0.945 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.441 0.559 42 H 0.175 0.825 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -27.258 7.954 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C 0.154 3.846 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.209 1.209 12 C 0.392 3.608 13 O -0.503 6.503 14 N -0.326 5.326 15 C 0.063 3.937 16 C -0.178 4.178 17 C -0.109 4.109 18 C -0.139 4.139 19 C 0.056 3.944 20 N -0.330 5.330 21 C -0.062 4.062 22 C 0.407 3.593 23 O -0.510 6.510 24 O -0.332 6.332 25 C -0.086 4.086 26 C -0.165 4.165 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.262 0.738 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.304 0.696 42 H 0.193 0.807 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.721 -27.017 7.817 28.917 hybrid contribution 1.050 1.642 -1.129 2.252 sum -5.671 -25.375 6.689 26.848 Atomic orbital electron populations 1.21915 0.77711 1.03982 1.02804 1.47374 1.08098 1.04743 1.75241 1.18705 0.90893 0.79004 0.96012 1.21732 1.36901 1.06449 0.93064 0.93126 1.25844 0.94862 0.96417 1.01983 1.70051 1.38907 1.14848 1.32914 0.85367 0.77837 0.78471 0.79108 1.19369 1.19012 1.20901 1.16178 0.85080 0.81339 0.78230 1.90872 1.14131 1.86484 1.58835 1.42602 1.10668 1.02390 1.76979 1.17911 0.93155 0.85702 0.96965 1.21224 0.96763 0.97899 1.01884 1.20997 0.98661 0.92469 0.98796 1.20337 0.96540 0.96417 1.00578 1.20533 0.92511 0.94699 0.86675 1.46835 1.08647 1.64390 1.13101 1.22045 1.01152 1.00342 0.82706 1.18125 0.82932 0.76868 0.81422 1.91038 1.75164 1.53968 1.30863 1.84139 1.31148 1.81054 1.36875 1.21221 0.92727 0.97535 0.97108 1.21208 1.02889 0.92494 0.99892 0.90720 0.90741 0.89515 0.94994 0.98514 0.92331 0.73848 0.88804 0.87580 0.90366 0.83990 0.92637 0.87111 0.90221 0.69646 0.80745 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.60 16 2 N -0.62 -27.33 2.86 -869.31 -2.48 -29.81 16 3 C 0.28 15.31 5.16 85.63 0.44 15.75 16 4 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 8 Si 0.97 46.26 29.54 68.60 2.03 48.29 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.69 31.28 8.12 179.05 1.45 32.73 16 13 O -0.62 -35.28 13.36 -4.01 -0.05 -35.33 16 14 N -0.68 -22.06 5.22 -317.16 -1.65 -23.71 16 15 C 0.16 5.00 6.30 38.15 0.24 5.24 16 16 C -0.16 -5.98 8.69 22.39 0.19 -5.78 16 17 C -0.09 -2.89 9.69 22.25 0.22 -2.67 16 18 C -0.14 -2.98 5.46 -19.84 -0.11 -3.09 16 19 C 0.18 2.79 5.57 85.63 0.48 3.27 16 20 N -0.59 -10.22 2.86 -981.64 -2.80 -13.03 16 21 C 0.08 0.72 10.49 127.77 1.34 2.06 16 22 C 0.65 15.63 8.77 129.79 1.14 16.77 16 23 O -0.62 -20.07 16.23 19.79 0.32 -19.75 16 24 O -0.52 -9.20 12.25 -55.45 -0.68 -9.87 16 25 C -0.07 -1.10 9.69 22.25 0.22 -0.89 16 26 C -0.14 -2.98 9.97 22.39 0.22 -2.76 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.09 1.88 6.30 -2.39 -0.02 1.87 16 30 H 0.03 1.76 8.07 -2.38 -0.02 1.75 16 31 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.42 9.82 6.52 -92.71 -0.60 9.22 16 34 H 0.09 4.49 6.22 -2.91 -0.02 4.47 16 35 H 0.11 3.75 7.57 -2.91 -0.02 3.73 16 36 H 0.08 1.54 7.36 -2.39 -0.02 1.52 16 37 H 0.14 0.84 7.83 -2.39 -0.02 0.83 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.22 7.89 -2.39 -0.02 0.20 16 40 H 0.08 0.72 7.37 -2.38 -0.02 0.70 16 41 H 0.44 4.56 9.11 -74.06 -0.67 3.89 16 42 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -92.02 368.19 2.58 -89.44 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.22 Total: 17.52 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 7.84 Total: 33.18 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.66 Total: -123.47 kcal Atomic # 8 Polarization: -64.55 SS G_CDS: -0.41 Total: -64.96 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -92.02 2.58 -89.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830831137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.961 kcal (2) G-P(sol) polarization free energy of solvation -92.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds