Wall clock time and date at job start Tue Mar 31 2020 13:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00167 * 2 1 4 4 C 1.50700 * 109.47149 * 89.99782 * 3 2 1 5 5 C 1.38283 * 119.92526 * 89.99960 * 4 3 2 6 6 C 1.38101 * 120.07597 * 179.97438 * 5 4 3 7 7 C 1.38912 * 119.92565 * 0.02562 * 6 5 4 8 8 N 1.39673 * 120.07315 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47324 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47118 * 89.99790 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00310 * 18 16 14 21 21 H 1.48507 * 109.46904 * 330.00133 * 18 16 14 22 22 C 1.38914 * 119.84917 * 0.25534 * 7 6 5 23 23 C 1.38106 * 119.92380 * 359.48549 * 22 7 6 24 24 C 1.34776 * 119.99842 * 179.97438 * 2 1 3 25 25 O 1.21511 * 120.00062 * 179.97438 * 24 2 1 26 26 O 1.34643 * 119.99934 * 0.02562 * 24 2 1 27 27 H 1.09000 * 109.47142 * 90.00290 * 1 2 3 28 28 H 1.08996 * 109.47258 * 210.00475 * 1 2 3 29 29 H 1.09000 * 109.46806 * 330.00143 * 1 2 3 30 30 H 1.09004 * 109.46845 * 329.99629 * 3 2 1 31 31 H 1.08999 * 109.46949 * 209.99940 * 3 2 1 32 32 H 1.08009 * 119.96048 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.03673 * 179.97438 * 6 5 4 34 34 H 0.96999 * 120.00315 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 36 36 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 37 37 H 0.96996 * 119.99844 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47042 * 300.00295 * 13 12 10 39 39 H 1.09004 * 109.46923 * 59.99881 * 13 12 10 40 40 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.03713 * 179.72784 * 22 7 6 42 42 H 1.07994 * 119.96460 * 180.25714 * 23 22 7 43 43 H 0.96701 * 116.99586 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 3.6015 1.3037 2.0713 6 6 3.8351 1.7010 3.3731 7 6 2.9101 2.5030 4.0294 8 7 3.1429 2.9062 5.3463 9 6 2.1659 3.7517 6.0370 10 6 2.6517 4.0423 7.4336 11 8 3.7095 3.5876 7.8147 12 7 1.9106 4.8075 8.2593 13 6 2.3825 5.0896 9.6172 14 6 1.3777 5.9593 10.3278 15 1 0.4778 6.2712 9.8186 16 6 1.6072 6.3570 11.6278 17 7 2.7034 5.9777 12.2476 18 14 0.3613 7.4345 12.5088 19 1 -0.6283 6.5764 13.2084 20 1 1.0609 8.2919 13.4991 21 1 -0.3392 8.2919 11.5190 22 6 1.7502 2.8983 3.3750 23 6 1.5255 2.5018 2.0713 24 6 2.1389 -1.1672 0.0005 25 8 3.3540 -1.1673 0.0001 26 8 1.4656 -2.3332 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6085 2.0284 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 4.3206 0.6804 1.5602 33 1 4.7355 1.3878 3.8807 34 1 3.9514 2.6265 5.8034 35 1 2.0462 4.6881 5.4921 36 1 1.2077 3.2344 6.0855 37 1 1.0644 5.1708 7.9547 38 1 2.5018 4.1532 10.1623 39 1 3.3410 5.6064 9.5687 40 1 2.8650 6.2578 13.1622 41 1 1.0270 3.5183 3.8839 42 1 0.6260 2.8122 1.5606 43 1 1.9923 -3.1442 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830835187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:37 Heat of formation + Delta-G solvation = -94.624772 kcal Electronic energy + Delta-G solvation = -25449.412344 eV Core-core repulsion = 21494.392991 eV Total energy + Delta-G solvation = -3955.019353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71541 -39.69760 -38.87607 -36.93533 -35.95368 -35.07314 -34.28410 -32.46373 -31.15300 -30.81341 -28.51519 -27.30266 -26.56703 -25.15465 -23.03928 -22.42959 -21.74462 -20.61915 -19.88263 -18.41421 -18.00406 -17.70702 -16.92354 -16.55940 -16.07967 -15.66471 -15.40228 -15.37854 -15.18450 -14.97828 -14.39700 -14.03921 -13.77747 -13.58544 -13.51622 -13.46975 -13.33410 -12.81699 -12.66529 -12.48721 -12.13804 -12.04109 -11.89946 -11.74563 -11.65355 -11.06165 -11.00018 -10.94956 -10.80572 -10.39702 -10.09705 -9.49415 -9.32276 -9.17305 -8.95469 -8.83219 -8.05618 -7.41541 -6.23855 -4.31584 1.34879 1.43219 2.20913 2.54737 3.11417 3.19732 3.23934 3.27269 3.30519 3.79963 4.00579 4.02247 4.30002 4.67303 4.73168 4.79591 4.96704 4.98970 5.10230 5.12441 5.18764 5.30952 5.35761 5.37265 5.39886 5.44411 5.60324 5.74555 5.99091 6.03766 6.25124 6.29039 6.33217 6.60955 6.80994 6.95405 7.15142 7.23393 7.31757 7.40199 7.56004 7.76694 7.87848 8.06125 8.44555 8.64687 8.89733 9.35034 10.86239 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.001814 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.409031 B =15433.020305 C =15790.393134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.181 3.819 4 C -0.187 4.187 5 C -0.042 4.042 6 C -0.201 4.201 7 C 0.234 3.766 8 N -0.729 5.729 9 C 0.103 3.897 10 C 0.493 3.507 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.249 3.751 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.208 4.208 23 C -0.053 4.053 24 C 0.663 3.337 25 O -0.577 6.577 26 O -0.528 6.528 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.393 0.607 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -10.625 -26.833 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.332 5.332 3 C 0.061 3.939 4 C -0.190 4.190 5 C -0.062 4.062 6 C -0.223 4.223 7 C 0.128 3.872 8 N -0.360 5.360 9 C -0.026 4.026 10 C 0.276 3.724 11 O -0.432 6.432 12 N -0.354 5.354 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.231 4.231 23 C -0.072 4.072 24 C 0.416 3.584 25 O -0.466 6.466 26 O -0.338 6.338 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -5.441 -10.480 -26.233 28.768 hybrid contribution -0.520 0.184 0.812 0.982 sum -5.962 -10.296 -25.420 28.067 Atomic orbital electron populations 1.21777 0.78515 1.03755 1.01894 1.46749 1.07275 1.03240 1.75942 1.20279 0.97684 0.82122 0.93834 1.19775 0.97317 1.04687 0.97214 1.20864 0.96094 0.95833 0.93359 1.20623 1.00905 1.04601 0.96204 1.17907 0.93367 0.91771 0.84163 1.44530 1.25127 1.55342 1.11032 1.21125 0.93265 0.96111 0.92081 1.20341 0.85351 0.79917 0.86746 1.90660 1.23275 1.52681 1.76622 1.46417 1.23174 1.49481 1.16290 1.19164 0.95767 0.96624 0.75567 1.21200 1.06117 1.32594 0.98520 0.91781 1.24964 0.95741 0.96162 0.97177 1.69971 1.25029 1.44486 1.12673 0.86384 0.80807 0.80127 0.79416 1.20413 1.20957 1.19708 1.20620 0.98410 1.07825 0.96215 1.20699 0.97439 0.95386 0.93673 1.17762 0.83440 0.81238 0.75926 1.91035 1.12472 1.86949 1.56157 1.84182 1.44820 1.16303 1.88495 0.92495 0.90508 0.90710 0.89265 0.89006 0.85699 0.86132 0.74926 0.89566 0.89623 0.77388 0.95372 0.95345 0.92351 0.86019 0.86462 0.71420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.44 59.85 0.63 1.08 16 2 N -0.59 -4.84 2.86 -188.80 -0.54 -5.38 16 3 C 0.18 1.42 5.53 -5.19 -0.03 1.39 16 4 C -0.19 -1.84 5.46 -104.59 -0.57 -2.41 16 5 C -0.04 -0.49 9.69 -39.62 -0.38 -0.87 16 6 C -0.20 -2.48 9.90 -39.38 -0.39 -2.87 16 7 C 0.23 2.96 6.65 -83.79 -0.56 2.40 16 8 N -0.73 -10.11 5.70 -59.80 -0.34 -10.45 16 9 C 0.10 1.37 5.39 -5.19 -0.03 1.34 16 10 C 0.49 9.19 7.90 -10.99 -0.09 9.10 16 11 O -0.55 -12.57 15.67 5.56 0.09 -12.48 16 12 N -0.71 -13.96 5.55 -61.47 -0.34 -14.30 16 13 C 0.25 6.40 5.43 -5.20 -0.03 6.37 16 14 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 18 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.21 -2.27 9.31 -39.38 -0.37 -2.63 16 23 C -0.05 -0.49 9.69 -39.61 -0.38 -0.87 16 24 C 0.66 6.61 8.77 54.05 0.47 7.08 16 25 O -0.58 -7.48 16.23 -19.28 -0.31 -7.80 16 26 O -0.53 -3.77 12.25 -40.33 -0.49 -4.26 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.44 7.37 -51.93 -0.38 0.06 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.09 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.09 0.80 7.36 -51.93 -0.38 0.41 16 32 H 0.13 1.46 7.57 -52.48 -0.40 1.07 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.41 6.25 7.45 -40.82 -0.30 5.94 16 35 H 0.09 0.98 7.96 -51.93 -0.41 0.57 16 36 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 37 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 1.16 6.73 -52.49 -0.35 0.81 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.43 1.29 9.11 45.56 0.42 1.70 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.84 373.65 -7.79 -42.63 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.05 Total: 9.88 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.14 Total: 6.02 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.49 Total: -55.01 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.72 Total: -24.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.84 -7.79 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830835187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.997 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds