Wall clock time and date at job start Tue Mar 31 2020 13:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00167 * 2 1 4 4 C 1.50700 * 109.47149 * 89.99782 * 3 2 1 5 5 C 1.38283 * 119.92526 * 89.99960 * 4 3 2 6 6 C 1.38101 * 120.07597 * 179.97438 * 5 4 3 7 7 C 1.38912 * 119.92565 * 0.02562 * 6 5 4 8 8 N 1.39673 * 120.07315 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47324 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47118 * 89.99790 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00310 * 18 16 14 21 21 H 1.48507 * 109.46904 * 330.00133 * 18 16 14 22 22 C 1.38914 * 119.84917 * 0.25534 * 7 6 5 23 23 C 1.38106 * 119.92380 * 359.48549 * 22 7 6 24 24 C 1.34776 * 119.99842 * 179.97438 * 2 1 3 25 25 O 1.21511 * 120.00062 * 179.97438 * 24 2 1 26 26 O 1.34643 * 119.99934 * 0.02562 * 24 2 1 27 27 H 1.09000 * 109.47142 * 90.00290 * 1 2 3 28 28 H 1.08996 * 109.47258 * 210.00475 * 1 2 3 29 29 H 1.09000 * 109.46806 * 330.00143 * 1 2 3 30 30 H 1.09004 * 109.46845 * 329.99629 * 3 2 1 31 31 H 1.08999 * 109.46949 * 209.99940 * 3 2 1 32 32 H 1.08009 * 119.96048 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.03673 * 179.97438 * 6 5 4 34 34 H 0.96999 * 120.00315 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 36 36 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 37 37 H 0.96996 * 119.99844 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47042 * 300.00295 * 13 12 10 39 39 H 1.09004 * 109.46923 * 59.99881 * 13 12 10 40 40 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.03713 * 179.72784 * 22 7 6 42 42 H 1.07994 * 119.96460 * 180.25714 * 23 22 7 43 43 H 0.96701 * 116.99586 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 3.6015 1.3037 2.0713 6 6 3.8351 1.7010 3.3731 7 6 2.9101 2.5030 4.0294 8 7 3.1429 2.9062 5.3463 9 6 2.1659 3.7517 6.0370 10 6 2.6517 4.0423 7.4336 11 8 3.7095 3.5876 7.8147 12 7 1.9106 4.8075 8.2593 13 6 2.3825 5.0896 9.6172 14 6 1.3777 5.9593 10.3278 15 1 0.4778 6.2712 9.8186 16 6 1.6072 6.3570 11.6278 17 7 2.7034 5.9777 12.2476 18 14 0.3613 7.4345 12.5088 19 1 -0.6283 6.5764 13.2084 20 1 1.0609 8.2919 13.4991 21 1 -0.3392 8.2919 11.5190 22 6 1.7502 2.8983 3.3750 23 6 1.5255 2.5018 2.0713 24 6 2.1389 -1.1672 0.0005 25 8 3.3540 -1.1673 0.0001 26 8 1.4656 -2.3332 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6085 2.0284 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 4.3206 0.6804 1.5602 33 1 4.7355 1.3878 3.8807 34 1 3.9514 2.6265 5.8034 35 1 2.0462 4.6881 5.4921 36 1 1.2077 3.2344 6.0855 37 1 1.0644 5.1708 7.9547 38 1 2.5018 4.1532 10.1623 39 1 3.3410 5.6064 9.5687 40 1 2.8650 6.2578 13.1622 41 1 1.0270 3.5183 3.8839 42 1 0.6260 2.8122 1.5606 43 1 1.9923 -3.1442 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830835187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:37 Heat of formation + Delta-G solvation = -121.775370 kcal Electronic energy + Delta-G solvation = -25450.589682 eV Core-core repulsion = 21494.392991 eV Total energy + Delta-G solvation = -3956.196691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41664 -40.89057 -40.06964 -37.64251 -36.73387 -36.30808 -35.78823 -34.41367 -32.04863 -31.63477 -29.96959 -28.32834 -27.51995 -26.09831 -24.60109 -23.56649 -22.58362 -21.56935 -21.25727 -19.35882 -19.04396 -18.43278 -18.27483 -17.56490 -17.31848 -16.90135 -16.74475 -16.65463 -16.29421 -15.88942 -15.68014 -14.96047 -14.92080 -14.78890 -14.41247 -14.24613 -14.14967 -13.98974 -13.92763 -13.87282 -13.28638 -13.14389 -12.95203 -12.77058 -12.71932 -12.56616 -12.39143 -12.23985 -11.80416 -11.59859 -11.50895 -10.99337 -10.95934 -10.82489 -9.92093 -9.79983 -9.77993 -8.34181 -8.30708 -6.47445 0.55482 0.58931 1.43610 1.45707 1.56949 1.58672 1.61291 1.82130 2.06636 2.38221 2.73171 3.00120 3.04691 3.46948 3.80061 3.97211 4.04013 4.16687 4.30160 4.34144 4.39048 4.39554 4.57422 4.69359 4.75451 4.83065 4.92696 5.02652 5.07304 5.19849 5.20417 5.40065 5.43117 5.45059 5.51243 5.62544 5.76151 5.81631 5.84814 5.98877 6.31365 6.36490 6.62360 6.66824 6.82058 7.20669 7.38073 7.42195 8.81342 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.001814 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.409031 B =15433.020305 C =15790.393134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.180 3.820 4 C -0.181 4.181 5 C -0.056 4.056 6 C -0.218 4.218 7 C 0.215 3.785 8 N -0.743 5.743 9 C 0.120 3.880 10 C 0.490 3.510 11 O -0.600 6.600 12 N -0.699 5.699 13 C 0.265 3.735 14 C -0.556 4.556 15 H 0.088 0.912 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.253 1.253 22 C -0.209 4.209 23 C -0.045 4.045 24 C 0.655 3.345 25 O -0.617 6.617 26 O -0.522 6.522 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.401 0.599 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.413 0.587 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.268 0.732 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.162 -9.390 -28.894 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.330 5.330 3 C 0.060 3.940 4 C -0.184 4.184 5 C -0.075 4.075 6 C -0.241 4.241 7 C 0.111 3.889 8 N -0.374 5.374 9 C -0.007 4.007 10 C 0.277 3.723 11 O -0.482 6.482 12 N -0.349 5.349 13 C 0.142 3.858 14 C -0.593 4.593 15 H 0.106 0.894 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.177 1.177 22 C -0.231 4.231 23 C -0.064 4.064 24 C 0.409 3.591 25 O -0.509 6.509 26 O -0.333 6.333 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.237 0.763 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.250 0.750 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -9.411 -9.263 -28.369 31.292 hybrid contribution 0.725 -0.308 1.346 1.560 sum -8.686 -9.571 -27.023 29.955 Atomic orbital electron populations 1.21984 0.76523 1.04479 1.03259 1.46885 1.08476 1.02649 1.74944 1.20378 0.98086 0.82882 0.92657 1.20048 0.96459 1.03872 0.98069 1.20891 0.97085 0.96345 0.93211 1.20680 1.01135 1.05492 0.96800 1.18059 0.94440 0.92674 0.83740 1.44562 1.24991 1.56194 1.11672 1.21110 0.93703 0.97855 0.88046 1.21310 0.84268 0.78190 0.88516 1.90644 1.25465 1.54097 1.77973 1.46087 1.24234 1.50188 1.14415 1.18577 0.94541 0.94248 0.78390 1.21627 1.06670 1.32157 0.98892 0.89428 1.26089 0.97789 0.97635 0.98264 1.70139 1.27514 1.46181 1.13168 0.85141 0.77856 0.78045 0.78090 1.19650 1.21190 1.17691 1.20944 0.97765 1.07559 0.96873 1.21083 0.98226 0.94008 0.93049 1.18053 0.83159 0.82235 0.75684 1.91013 1.14296 1.87604 1.58024 1.84163 1.44733 1.16410 1.88038 0.90812 0.90977 0.88822 0.85584 0.90424 0.86908 0.87082 0.76257 0.86552 0.86680 0.75031 0.99390 0.99334 0.92282 0.84003 0.82577 0.69666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.44 127.77 1.33 1.91 16 2 N -0.59 -8.29 2.86 -981.64 -2.80 -11.09 16 3 C 0.18 2.39 5.53 85.63 0.47 2.86 16 4 C -0.18 -3.18 5.46 -19.84 -0.11 -3.29 16 5 C -0.06 -1.30 9.69 22.25 0.22 -1.08 16 6 C -0.22 -5.54 9.90 22.40 0.22 -5.32 16 7 C 0.21 5.22 6.65 38.22 0.25 5.47 16 8 N -0.74 -20.21 5.70 -343.11 -1.96 -22.16 16 9 C 0.12 2.95 5.39 85.63 0.46 3.41 16 10 C 0.49 18.28 7.90 87.66 0.69 18.97 16 11 O -0.60 -28.44 15.67 -3.04 -0.05 -28.49 16 12 N -0.70 -27.51 5.55 -466.78 -2.59 -30.10 16 13 C 0.27 14.11 5.43 85.63 0.46 14.57 16 14 C -0.56 -29.25 9.28 25.60 0.24 -29.02 16 15 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 16 C 0.00 0.10 5.46 84.65 0.46 0.56 16 17 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 18 Si 0.99 41.31 29.54 68.60 2.03 43.34 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 22 C -0.21 -3.86 9.31 22.40 0.21 -3.65 16 23 C -0.04 -0.65 9.69 22.25 0.22 -0.44 16 24 C 0.65 12.50 8.77 129.79 1.14 13.64 16 25 O -0.62 -16.28 16.23 19.80 0.32 -15.96 16 26 O -0.52 -6.82 12.25 -55.52 -0.68 -7.50 16 27 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.62 7.37 -2.39 -0.02 0.60 16 29 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 30 H 0.13 0.75 8.01 -2.39 -0.02 0.73 16 31 H 0.08 1.28 7.36 -2.39 -0.02 1.26 16 32 H 0.11 2.83 7.57 -2.91 -0.02 2.80 16 33 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.40 12.65 7.45 -92.71 -0.69 11.96 16 35 H 0.12 2.21 7.96 -2.38 -0.02 2.19 16 36 H 0.12 2.21 7.94 -2.39 -0.02 2.19 16 37 H 0.41 12.77 8.32 -92.71 -0.77 12.00 16 38 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 41 H 0.14 2.01 6.73 -2.91 -0.02 1.99 16 42 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.44 2.33 9.11 -74.06 -0.67 1.65 16 Total: -1.00 -80.22 373.65 -0.24 -80.47 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -1.07 Total: 28.10 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.27 Total: 18.61 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -7.07 Total: -118.57 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.41 Total: -51.95 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -80.22 -0.24 -80.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830835187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.308 kcal (2) G-P(sol) polarization free energy of solvation -80.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds