Wall clock time and date at job start Tue Mar 31 2020 13:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 119.99510 * 2 1 4 4 N 1.34776 * 120.00465 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00195 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47043 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00087 * 269.99950 * 7 6 5 9 9 C 1.34784 * 119.99728 * 89.99952 * 7 6 5 10 10 O 1.21581 * 119.99971 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99771 * 180.02562 * 9 7 6 12 12 C 1.39945 * 120.00303 * 174.69267 * 11 9 7 13 13 C 1.38962 * 120.03076 * 326.34202 * 12 11 9 14 14 C 1.38160 * 120.06637 * 180.02562 * 13 12 11 15 15 C 1.38167 * 120.13414 * 359.71878 * 14 13 12 16 16 C 1.38903 * 120.07541 * 0.55828 * 15 14 13 17 17 O 1.35748 * 120.03979 * 179.71538 * 16 15 14 18 18 C 1.34825 * 117.00174 * 173.81949 * 17 16 15 19 19 H 1.07998 * 120.00242 * 354.59912 * 18 17 16 20 20 C 1.38651 * 119.99955 * 174.59544 * 18 17 16 21 21 N 1.31559 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47088 * 90.00156 * 22 20 18 24 24 H 1.48495 * 109.47340 * 210.00262 * 22 20 18 25 25 H 1.48497 * 109.46952 * 330.00169 * 22 20 18 26 26 C 1.38700 * 120.03782 * 146.36633 * 12 11 9 27 27 H 1.09002 * 109.46691 * 239.99021 * 1 2 3 28 28 H 1.09001 * 109.47353 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47510 * 119.99684 * 1 2 3 30 30 H 0.97000 * 119.99778 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.46873 * 59.99509 * 5 4 2 32 32 H 1.09002 * 109.47111 * 299.99875 * 5 4 2 33 33 H 1.08992 * 109.47424 * 60.00033 * 6 5 4 34 34 H 1.09004 * 109.46765 * 299.99755 * 6 5 4 35 35 H 1.08998 * 109.47348 * 270.00371 * 8 7 6 36 36 H 1.09003 * 109.46954 * 30.00146 * 8 7 6 37 37 H 1.09007 * 109.47372 * 149.99881 * 8 7 6 38 38 H 0.97006 * 120.00159 * 354.68564 * 11 9 7 39 39 H 1.08001 * 119.96171 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.92710 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.95750 * 180.27523 * 15 14 13 42 42 H 0.96993 * 120.00379 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.07244 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 7 5.6210 -2.6095 -0.0021 8 6 6.3525 -2.6099 -1.2714 9 6 6.2958 -2.6090 1.1646 10 8 5.6887 -2.6091 2.2180 11 7 7.6435 -2.6084 1.1635 12 6 8.3442 -2.4958 2.3697 13 6 7.8253 -1.7299 3.4066 14 6 8.5167 -1.6178 4.5975 15 6 9.7228 -2.2711 4.7634 16 6 10.2497 -3.0335 3.7287 17 8 11.4375 -3.6703 3.8906 18 6 11.8301 -4.4948 2.8987 19 1 11.1698 -4.6920 2.0672 20 6 13.0817 -5.0896 2.9462 21 7 13.8860 -4.8497 3.9593 22 14 13.6260 -6.2315 1.5716 23 1 14.3144 -5.4440 0.5174 24 1 14.5580 -7.2517 2.1154 25 1 12.4384 -6.9063 0.9893 26 6 9.5576 -3.1480 2.5312 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.6960 -2.0072 -0.0005 31 1 4.0095 -0.6533 0.8888 32 1 4.0089 -0.6530 -0.8911 33 1 3.7924 -3.1236 -0.8906 34 1 3.7930 -3.1231 0.8893 35 1 6.5339 -3.6376 -1.5859 36 1 5.7627 -2.0964 -2.0308 37 1 7.3050 -2.0959 -1.1421 38 1 8.1280 -2.6861 0.3267 39 1 6.8805 -1.2218 3.2813 40 1 8.1111 -1.0223 5.4020 41 1 10.2587 -2.1851 5.6971 42 1 14.7617 -5.2655 3.9923 43 1 9.9630 -3.7439 1.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831291728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:34 Heat of formation + Delta-G solvation = -52.916792 kcal Electronic energy + Delta-G solvation = -26137.283708 eV Core-core repulsion = 22184.072949 eV Total energy + Delta-G solvation = -3953.210759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67697 -39.80900 -38.83504 -36.96075 -35.94882 -34.90902 -34.14289 -32.23085 -31.15392 -29.50605 -28.85002 -28.27953 -26.65293 -25.29408 -23.68684 -21.80413 -21.66489 -20.98309 -19.73390 -18.54349 -17.91529 -17.29241 -17.20605 -16.75501 -15.92675 -15.90872 -15.49099 -15.06393 -14.90353 -14.56473 -14.27263 -14.06163 -13.86968 -13.70261 -13.57857 -13.37123 -13.00289 -12.94155 -12.78902 -12.54336 -12.47854 -12.29673 -11.74296 -11.65531 -11.56442 -11.12370 -11.02423 -10.73921 -10.44143 -10.28225 -10.06472 -9.64679 -9.47868 -9.43656 -9.00053 -8.79748 -7.70308 -7.12615 -6.44396 -4.04031 2.03384 2.30619 2.32793 2.43895 3.00593 3.10595 3.11412 3.16560 3.25005 3.84289 3.95851 4.41878 4.57870 4.58694 4.63721 4.73705 4.87394 4.95739 5.04205 5.11146 5.13634 5.29324 5.33786 5.41591 5.46266 5.67248 5.70864 5.95935 6.02302 6.09086 6.13467 6.26169 6.33788 6.52291 6.75808 7.01510 7.10034 7.11664 7.20300 7.35138 7.44012 7.83568 7.88301 7.89135 8.00085 8.54250 9.00964 9.72111 10.73732 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002403 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.976835 B =11650.889648 C =12626.425419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.545 6.545 4 N -0.729 5.729 5 C 0.101 3.899 6 C 0.126 3.874 7 N -0.632 5.632 8 C 0.075 3.925 9 C 0.705 3.295 10 O -0.565 6.565 11 N -0.679 5.679 12 C 0.196 3.804 13 C -0.204 4.204 14 C -0.062 4.062 15 C -0.201 4.201 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.089 0.911 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.257 4.257 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.401 0.599 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.403 0.597 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.901 3.364 -13.020 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.422 6.422 4 N -0.382 5.382 5 C -0.025 4.025 6 C 0.002 3.998 7 N -0.370 5.370 8 C -0.068 4.068 9 C 0.407 3.593 10 O -0.440 6.440 11 N -0.327 5.327 12 C 0.103 3.897 13 C -0.225 4.225 14 C -0.081 4.081 15 C -0.221 4.221 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.279 4.279 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.235 0.765 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.239 0.761 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.511 4.054 -12.029 24.978 hybrid contribution 0.348 -1.102 -1.358 1.783 sum -21.163 2.951 -13.387 25.216 Atomic orbital electron populations 1.21916 0.91453 1.05642 1.04290 1.20836 0.90666 0.83360 0.75552 1.90752 1.70913 1.31416 1.49084 1.45883 1.07238 1.08948 1.76168 1.21767 0.79549 0.97991 1.03145 1.21354 0.79001 0.95533 1.03956 1.46842 1.05854 1.79147 1.05161 1.21820 0.97347 1.02181 0.85493 1.15834 0.81817 0.77889 0.83773 1.90954 1.67453 1.56248 1.29375 1.42721 1.04533 1.76135 1.09340 1.17189 0.91559 0.95809 0.85159 1.20564 1.02272 1.05105 0.94539 1.20528 0.93598 0.97663 0.96341 1.20242 0.98212 1.04609 0.99034 1.19062 0.86754 0.90727 0.91982 1.84020 1.29421 1.51549 1.43012 1.21252 1.00928 1.22387 1.02161 0.89317 1.25272 0.94869 0.98211 0.98184 1.70033 1.08749 1.41846 1.29095 0.85735 0.78914 0.79233 0.79657 1.19930 1.20263 1.19319 1.20768 0.98242 1.08625 1.00273 0.89262 0.88932 0.89391 0.76453 0.90705 0.91436 0.89920 0.88878 0.92128 0.90549 0.91041 0.76089 0.86280 0.86626 0.86386 0.92043 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.32 36.01 0.37 -0.44 16 2 C 0.51 4.72 7.94 -10.99 -0.09 4.63 16 3 O -0.54 -7.93 17.09 5.56 0.09 -7.83 16 4 N -0.73 -5.29 5.56 -60.30 -0.33 -5.62 16 5 C 0.10 0.94 6.00 -4.04 -0.02 0.92 16 6 C 0.13 1.03 5.52 -4.04 -0.02 1.01 16 7 N -0.63 -6.57 2.87 -187.35 -0.54 -7.11 16 8 C 0.07 0.51 10.16 59.84 0.61 1.12 16 9 C 0.70 10.68 8.01 -86.91 -0.70 9.99 16 10 O -0.56 -10.58 13.63 5.29 0.07 -10.51 16 11 N -0.68 -10.49 5.17 -14.24 -0.07 -10.57 16 12 C 0.20 3.82 6.27 -83.71 -0.52 3.30 16 13 C -0.20 -4.02 8.65 -39.34 -0.34 -4.36 16 14 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 15 C -0.20 -4.38 9.99 -39.36 -0.39 -4.77 16 16 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 17 O -0.18 -5.03 9.76 0.07 0.00 -5.03 16 18 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16 19 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 22 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.26 -5.60 9.04 -39.21 -0.35 -5.95 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.40 1.52 8.47 -40.82 -0.35 1.18 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.07 0.48 6.45 -51.93 -0.33 0.15 16 38 H 0.40 4.95 6.63 -40.82 -0.27 4.68 16 39 H 0.12 2.34 6.43 -52.49 -0.34 2.00 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -37.44 367.94 -7.03 -44.48 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.61 Total: 7.70 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.93 Total: -1.86 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.19 Total: -47.69 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.44 -7.03 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831291728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.442 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds