Wall clock time and date at job start Tue Mar 31 2020 13:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 119.99510 * 2 1 4 4 N 1.34776 * 120.00465 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00195 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47043 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00087 * 269.99950 * 7 6 5 9 9 C 1.34784 * 119.99728 * 89.99952 * 7 6 5 10 10 O 1.21581 * 119.99971 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99771 * 180.02562 * 9 7 6 12 12 C 1.39945 * 120.00303 * 174.69267 * 11 9 7 13 13 C 1.38962 * 120.03076 * 326.34202 * 12 11 9 14 14 C 1.38160 * 120.06637 * 180.02562 * 13 12 11 15 15 C 1.38167 * 120.13414 * 359.71878 * 14 13 12 16 16 C 1.38903 * 120.07541 * 0.55828 * 15 14 13 17 17 O 1.35748 * 120.03979 * 179.71538 * 16 15 14 18 18 C 1.34825 * 117.00174 * 173.81949 * 17 16 15 19 19 H 1.07998 * 120.00242 * 354.59912 * 18 17 16 20 20 C 1.38651 * 119.99955 * 174.59544 * 18 17 16 21 21 N 1.31559 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47088 * 90.00156 * 22 20 18 24 24 H 1.48495 * 109.47340 * 210.00262 * 22 20 18 25 25 H 1.48497 * 109.46952 * 330.00169 * 22 20 18 26 26 C 1.38700 * 120.03782 * 146.36633 * 12 11 9 27 27 H 1.09002 * 109.46691 * 239.99021 * 1 2 3 28 28 H 1.09001 * 109.47353 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47510 * 119.99684 * 1 2 3 30 30 H 0.97000 * 119.99778 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.46873 * 59.99509 * 5 4 2 32 32 H 1.09002 * 109.47111 * 299.99875 * 5 4 2 33 33 H 1.08992 * 109.47424 * 60.00033 * 6 5 4 34 34 H 1.09004 * 109.46765 * 299.99755 * 6 5 4 35 35 H 1.08998 * 109.47348 * 270.00371 * 8 7 6 36 36 H 1.09003 * 109.46954 * 30.00146 * 8 7 6 37 37 H 1.09007 * 109.47372 * 149.99881 * 8 7 6 38 38 H 0.97006 * 120.00159 * 354.68564 * 11 9 7 39 39 H 1.08001 * 119.96171 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.92710 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.95750 * 180.27523 * 15 14 13 42 42 H 0.96993 * 120.00379 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.07244 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 7 5.6210 -2.6095 -0.0021 8 6 6.3525 -2.6099 -1.2714 9 6 6.2958 -2.6090 1.1646 10 8 5.6887 -2.6091 2.2180 11 7 7.6435 -2.6084 1.1635 12 6 8.3442 -2.4958 2.3697 13 6 7.8253 -1.7299 3.4066 14 6 8.5167 -1.6178 4.5975 15 6 9.7228 -2.2711 4.7634 16 6 10.2497 -3.0335 3.7287 17 8 11.4375 -3.6703 3.8906 18 6 11.8301 -4.4948 2.8987 19 1 11.1698 -4.6920 2.0672 20 6 13.0817 -5.0896 2.9462 21 7 13.8860 -4.8497 3.9593 22 14 13.6260 -6.2315 1.5716 23 1 14.3144 -5.4440 0.5174 24 1 14.5580 -7.2517 2.1154 25 1 12.4384 -6.9063 0.9893 26 6 9.5576 -3.1480 2.5312 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.6960 -2.0072 -0.0005 31 1 4.0095 -0.6533 0.8888 32 1 4.0089 -0.6530 -0.8911 33 1 3.7924 -3.1236 -0.8906 34 1 3.7930 -3.1231 0.8893 35 1 6.5339 -3.6376 -1.5859 36 1 5.7627 -2.0964 -2.0308 37 1 7.3050 -2.0959 -1.1421 38 1 8.1280 -2.6861 0.3267 39 1 6.8805 -1.2218 3.2813 40 1 8.1111 -1.0223 5.4020 41 1 10.2587 -2.1851 5.6971 42 1 14.7617 -5.2655 3.9923 43 1 9.9630 -3.7439 1.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831291728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:34 Heat of formation + Delta-G solvation = -81.283393 kcal Electronic energy + Delta-G solvation = -26138.513776 eV Core-core repulsion = 22184.072949 eV Total energy + Delta-G solvation = -3954.440827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89339 -40.70278 -40.43321 -38.45760 -37.13094 -35.98105 -35.35450 -34.21226 -31.89335 -30.93351 -30.23608 -29.24258 -27.54025 -27.19559 -24.66553 -23.50923 -22.97327 -21.77589 -21.05760 -19.84616 -19.55651 -18.81228 -17.94005 -17.63830 -17.22854 -16.85639 -16.69626 -16.53551 -16.23289 -15.95160 -15.65851 -15.49087 -15.29747 -14.73748 -14.63837 -14.54999 -14.29745 -14.07215 -13.55919 -13.42801 -13.37483 -13.19560 -13.09359 -13.02454 -12.74794 -12.67699 -12.41482 -12.36212 -12.10411 -11.53911 -11.31332 -11.16589 -11.05188 -10.72086 -10.19209 -9.89541 -9.33206 -8.84912 -8.45158 -6.13967 0.43385 0.69872 1.35302 1.36885 1.46409 1.54398 1.62243 1.95295 2.18863 2.31556 2.84944 2.85856 3.18198 3.49558 3.81247 3.89615 3.98204 4.10773 4.18712 4.32523 4.37214 4.44052 4.53715 4.56256 4.62599 4.66426 4.70503 4.74759 4.85994 4.89319 5.01358 5.10367 5.11795 5.24995 5.34045 5.45997 5.51895 5.66938 5.67589 5.80365 6.02580 6.18909 6.54021 6.73161 6.98956 7.24875 7.35366 7.78534 8.77791 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002403 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.976835 B =11650.889648 C =12626.425419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.714 5.714 5 C 0.109 3.891 6 C 0.129 3.871 7 N -0.622 5.622 8 C 0.066 3.934 9 C 0.699 3.301 10 O -0.606 6.606 11 N -0.673 5.673 12 C 0.206 3.794 13 C -0.200 4.200 14 C -0.051 4.051 15 C -0.214 4.214 16 C 0.136 3.864 17 O -0.225 6.225 18 C -0.412 4.412 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.019 2.981 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.252 1.252 26 C -0.259 4.259 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.421 0.579 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.570 2.464 -15.921 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.290 3.710 3 O -0.489 6.489 4 N -0.368 5.368 5 C -0.017 4.017 6 C 0.006 3.994 7 N -0.358 5.358 8 C -0.076 4.076 9 C 0.401 3.599 10 O -0.484 6.484 11 N -0.323 5.323 12 C 0.110 3.890 13 C -0.221 4.221 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.085 3.915 17 O -0.132 6.132 18 C -0.488 4.488 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.176 1.176 26 C -0.281 4.281 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.259 0.741 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.258 0.742 39 H 0.143 0.857 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.267 3.133 -15.007 28.704 hybrid contribution 0.891 -0.677 -0.470 1.214 sum -23.376 2.456 -15.477 28.143 Atomic orbital electron populations 1.21925 0.87578 1.06039 1.06722 1.21742 0.92554 0.82686 0.74053 1.90726 1.72436 1.33626 1.52097 1.45772 1.06452 1.09638 1.74920 1.21541 0.80852 0.98326 1.01012 1.21524 0.77578 0.94782 1.05542 1.46934 1.06789 1.77242 1.04855 1.22139 0.97534 1.03813 0.84123 1.16056 0.81440 0.77693 0.84715 1.90921 1.68085 1.58059 1.31378 1.42594 1.04953 1.76051 1.08677 1.17182 0.90810 0.94401 0.86593 1.20824 1.02180 1.04427 0.94714 1.20889 0.92222 0.96663 0.97197 1.20456 0.99223 1.04949 0.98798 1.19569 0.86399 0.91714 0.93836 1.83987 1.31523 1.53345 1.44302 1.21784 1.01690 1.22846 1.02464 0.88028 1.26607 0.94547 0.99878 1.01059 1.70187 1.09499 1.44143 1.31901 0.84579 0.78809 0.76741 0.76030 1.18584 1.19909 1.17576 1.20786 0.98908 1.08878 0.99554 0.87146 0.89651 0.86330 0.74084 0.95047 0.91476 0.85347 0.90118 0.90317 0.87845 0.91048 0.74222 0.85738 0.83059 0.86208 0.91855 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.32 71.24 0.74 -0.37 16 2 C 0.50 8.66 7.94 87.66 0.70 9.36 16 3 O -0.61 -17.93 17.09 -3.04 -0.05 -17.98 16 4 N -0.71 -8.91 5.56 -463.07 -2.57 -11.49 16 5 C 0.11 1.89 6.00 86.38 0.52 2.41 16 6 C 0.13 1.76 5.52 86.38 0.48 2.24 16 7 N -0.62 -11.34 2.87 -864.91 -2.49 -13.83 16 8 C 0.07 0.66 10.16 127.77 1.30 1.96 16 9 C 0.70 20.17 8.01 179.05 1.43 21.60 16 10 O -0.61 -22.27 13.63 -3.97 -0.05 -22.32 16 11 N -0.67 -19.84 5.17 -317.24 -1.64 -21.48 16 12 C 0.21 7.87 6.27 38.13 0.24 8.10 16 13 C -0.20 -7.73 8.65 22.42 0.19 -7.54 16 14 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 15 C -0.21 -9.50 9.99 22.41 0.22 -9.28 16 16 C 0.14 6.86 6.64 22.56 0.15 7.01 16 17 O -0.23 -13.47 9.76 -22.66 -0.22 -13.69 16 18 C -0.41 -23.52 9.44 67.92 0.64 -22.88 16 19 H 0.10 5.27 5.30 -2.91 -0.02 5.25 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 21 N -0.92 -55.87 13.67 21.61 0.30 -55.58 16 22 Si 1.02 41.71 29.55 68.60 2.03 43.74 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 26 C -0.26 -11.39 9.04 22.51 0.20 -11.19 16 27 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 29 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.42 1.84 8.47 -92.71 -0.79 1.05 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 0.65 8.07 -2.39 -0.02 0.63 16 34 H 0.08 1.37 7.42 -2.39 -0.02 1.35 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.07 0.75 6.45 -2.38 -0.02 0.73 16 38 H 0.42 9.47 6.63 -92.70 -0.61 8.86 16 39 H 0.12 4.76 6.43 -2.91 -0.02 4.74 16 40 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.13 5.57 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -88.13 367.94 2.46 -85.67 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.34 Total: 28.08 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 7.50 Total: -1.12 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -6.40 Total: -102.37 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.33 Total: -54.00 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -88.13 2.46 -85.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831291728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.384 kcal (2) G-P(sol) polarization free energy of solvation -88.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds