Wall clock time and date at job start Tue Mar 31 2020 13:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 6 6 C 1.50707 * 109.47012 * 254.99837 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34770 * 120.00029 * 269.99919 * 4 3 2 13 13 O 1.21587 * 120.00059 * 179.97438 * 12 4 3 14 14 N 1.34773 * 120.00168 * 0.02562 * 12 4 3 15 15 C 1.46504 * 120.00347 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47628 * 180.02562 * 15 14 12 17 17 O 1.21300 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99687 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00048 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99973 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99508 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00304 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47235 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47080 * 119.99509 * 23 21 19 26 26 H 1.48499 * 109.47146 * 239.99724 * 23 21 19 27 27 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 28 28 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 30 30 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 31 31 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 32 32 H 1.09005 * 109.47643 * 135.00298 * 5 4 3 33 33 H 1.09000 * 109.47513 * 14.99462 * 5 4 3 34 34 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 38 38 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 39 39 H 0.96997 * 120.00203 * 359.97438 * 14 12 4 40 40 H 1.09002 * 109.46817 * 300.00023 * 15 14 12 41 41 H 1.09002 * 109.46917 * 59.99199 * 15 14 12 42 42 H 0.96994 * 119.99882 * 359.97438 * 18 16 15 43 43 H 0.97006 * 119.99652 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1476 1.5170 -1.2696 6 6 4.8237 0.1939 -1.5213 7 6 4.1596 -0.8008 -2.2146 8 6 4.7800 -2.0143 -2.4459 9 6 6.0646 -2.2329 -1.9845 10 6 6.7267 -1.2402 -1.2866 11 6 6.1080 -0.0250 -1.0593 12 6 4.0902 1.5120 1.1663 13 8 5.3023 1.6075 1.1658 14 7 3.4190 1.4581 2.3338 15 6 4.1498 1.5152 3.6022 16 6 3.1742 1.4366 4.7481 17 8 1.9853 1.3426 4.5270 18 7 3.6227 1.4717 6.0186 19 6 2.7351 1.3997 7.0610 20 1 1.6765 1.3152 6.8640 21 6 3.1973 1.4364 8.3708 22 7 4.4853 1.5398 8.6103 23 14 1.9880 1.3390 9.7912 24 1 0.6063 1.2289 9.2582 25 1 2.2951 0.1470 10.6218 26 1 2.1012 2.5642 10.6226 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 4.8988 2.3054 -1.2212 33 1 3.4504 1.7287 -2.0803 34 1 3.1561 -0.6298 -2.5755 35 1 4.2611 -2.7915 -2.9872 36 1 6.5494 -3.1808 -2.1657 37 1 7.7287 -1.4125 -0.9223 38 1 6.6271 0.7523 -0.5183 39 1 2.4521 1.3815 2.3342 40 1 4.8448 0.6774 3.6591 41 1 4.7044 2.4518 3.6602 42 1 4.5734 1.5472 6.1954 43 1 4.8080 1.5651 9.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838590775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:01 Heat of formation + Delta-G solvation = -33.877070 kcal Electronic energy + Delta-G solvation = -26978.492764 eV Core-core repulsion = 23026.107629 eV Total energy + Delta-G solvation = -3952.385135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28347 -39.09334 -38.22650 -37.42499 -34.65965 -34.03707 -33.54334 -31.80509 -31.35603 -30.98564 -29.97364 -27.89582 -25.81114 -24.27804 -23.03256 -22.70060 -21.72213 -20.36227 -19.60394 -18.78304 -18.05627 -17.32666 -16.76542 -16.06104 -15.77029 -15.31666 -15.15209 -15.08087 -14.97186 -14.61113 -14.52101 -14.14662 -13.91687 -13.54939 -13.45106 -13.27586 -12.89164 -12.68471 -12.34269 -12.26440 -12.18320 -11.91960 -11.64635 -11.61478 -11.39566 -11.13773 -11.10312 -10.50778 -10.40204 -10.31468 -10.03519 -9.63711 -9.19884 -8.99033 -8.91567 -8.61301 -8.59254 -8.08863 -6.50619 -3.92391 1.03874 1.31490 1.93410 3.10599 3.17603 3.22949 3.29343 3.45362 3.70655 3.75880 4.12090 4.59549 4.65891 4.78803 4.84130 4.88813 4.91885 4.99436 4.99974 5.11003 5.18087 5.24315 5.33493 5.50098 5.53703 5.64998 5.72167 5.84557 5.88783 5.96176 5.98860 5.99150 6.08900 6.31206 6.40080 6.43934 6.50851 6.73348 6.89601 7.05416 7.47185 7.93540 8.14152 8.46317 8.64867 9.05864 9.40528 9.88629 10.66419 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002866 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.400867 B = 9765.736081 C =10537.577743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.019 3.981 3 O -0.142 6.142 4 N -0.491 5.491 5 C 0.180 3.820 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.130 4.130 9 C -0.115 4.115 10 C -0.127 4.127 11 C -0.079 4.079 12 C 0.716 3.284 13 O -0.577 6.577 14 N -0.716 5.716 15 C 0.126 3.874 16 C 0.429 3.571 17 O -0.595 6.595 18 N -0.550 5.550 19 C -0.303 4.303 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.412 0.588 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -4.762 -21.688 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.060 4.060 3 O -0.147 6.147 4 N -0.272 5.272 5 C 0.059 3.941 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.148 4.148 9 C -0.133 4.133 10 C -0.145 4.145 11 C -0.097 4.097 12 C 0.418 3.582 13 O -0.455 6.455 14 N -0.373 5.373 15 C -0.002 4.002 16 C 0.215 3.785 17 O -0.482 6.482 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.251 0.749 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.230 0.770 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.702 -4.543 -21.577 22.061 hybrid contribution -0.470 -0.490 0.932 1.153 sum 0.232 -5.033 -20.645 21.250 Atomic orbital electron populations 1.21726 0.92213 1.03000 1.03602 1.23159 0.95988 0.85235 1.01583 1.90663 1.01959 1.25363 1.96732 1.49312 0.94510 1.78402 1.04984 1.20455 0.95085 0.94613 0.83913 1.20315 0.95280 0.96850 0.99699 1.21040 0.99331 0.93390 0.98739 1.21076 0.95506 0.97171 1.01095 1.21192 0.95087 0.99020 0.98029 1.21233 1.00309 0.93794 0.99143 1.21387 0.94392 0.97648 0.96301 1.15752 0.84652 0.78038 0.79749 1.90901 1.10704 1.58902 1.84994 1.44818 1.11908 1.77169 1.03411 1.20840 0.94100 1.03149 0.82145 1.19739 0.89119 0.85537 0.84142 1.90503 1.16699 1.56898 1.84077 1.41784 1.10327 1.62447 1.03900 1.19775 0.91802 1.47702 0.84011 0.87649 1.25320 0.96683 0.96860 0.98890 1.69627 1.12742 1.49271 1.21870 0.85763 0.80256 0.77830 0.80272 1.19141 1.20634 1.20615 0.91724 0.90474 0.90955 0.92338 0.92204 0.88206 0.88571 0.86401 0.86258 0.86284 0.86023 0.84480 0.74938 0.89992 0.89806 0.77038 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.02 0.21 7.04 37.16 0.26 0.47 16 3 O -0.14 -1.91 10.19 -11.47 -0.12 -2.03 16 4 N -0.49 -6.89 3.01 -66.41 -0.20 -7.09 16 5 C 0.18 2.02 5.85 -5.19 -0.03 1.99 16 6 C -0.12 -1.37 5.25 -104.62 -0.55 -1.92 16 7 C -0.11 -1.07 8.93 -39.58 -0.35 -1.42 16 8 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 9 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 10 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 11 C -0.08 -0.97 8.78 -39.58 -0.35 -1.32 16 12 C 0.72 12.17 8.23 -86.93 -0.72 11.46 16 13 O -0.58 -10.56 13.88 5.29 0.07 -10.48 16 14 N -0.72 -12.97 5.50 -66.41 -0.37 -13.33 16 15 C 0.13 2.40 6.15 -5.19 -0.03 2.36 16 16 C 0.43 10.00 7.85 -10.99 -0.09 9.92 16 17 O -0.60 -15.51 15.24 5.54 0.08 -15.43 16 18 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 20 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.95 13.05 55.50 0.72 -23.22 16 23 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.59 6.47 -51.93 -0.34 0.25 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.10 7.84 -51.93 -0.41 0.69 16 33 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.12 0.97 7.26 -52.48 -0.38 0.59 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.82 6.76 -52.49 -0.35 1.47 16 39 H 0.41 7.70 6.51 -40.82 -0.27 7.44 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.40 9.49 7.90 -40.82 -0.32 9.16 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -31.36 370.01 -8.01 -39.37 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -5.80 Total: 17.11 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -2.90 Total: 7.73 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.10 Total: -57.42 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.04 Total: -27.94 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.36 -8.01 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838590775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.493 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds