Wall clock time and date at job start Tue Mar 31 2020 13:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 6 6 C 1.50707 * 109.47012 * 254.99837 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34770 * 120.00029 * 269.99919 * 4 3 2 13 13 O 1.21587 * 120.00059 * 179.97438 * 12 4 3 14 14 N 1.34773 * 120.00168 * 0.02562 * 12 4 3 15 15 C 1.46504 * 120.00347 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47628 * 180.02562 * 15 14 12 17 17 O 1.21300 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99687 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00048 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99973 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99508 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00304 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47235 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47080 * 119.99509 * 23 21 19 26 26 H 1.48499 * 109.47146 * 239.99724 * 23 21 19 27 27 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 28 28 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 30 30 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 31 31 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 32 32 H 1.09005 * 109.47643 * 135.00298 * 5 4 3 33 33 H 1.09000 * 109.47513 * 14.99462 * 5 4 3 34 34 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 38 38 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 39 39 H 0.96997 * 120.00203 * 359.97438 * 14 12 4 40 40 H 1.09002 * 109.46817 * 300.00023 * 15 14 12 41 41 H 1.09002 * 109.46917 * 59.99199 * 15 14 12 42 42 H 0.96994 * 119.99882 * 359.97438 * 18 16 15 43 43 H 0.97006 * 119.99652 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1476 1.5170 -1.2696 6 6 4.8237 0.1939 -1.5213 7 6 4.1596 -0.8008 -2.2146 8 6 4.7800 -2.0143 -2.4459 9 6 6.0646 -2.2329 -1.9845 10 6 6.7267 -1.2402 -1.2866 11 6 6.1080 -0.0250 -1.0593 12 6 4.0902 1.5120 1.1663 13 8 5.3023 1.6075 1.1658 14 7 3.4190 1.4581 2.3338 15 6 4.1498 1.5152 3.6022 16 6 3.1742 1.4366 4.7481 17 8 1.9853 1.3426 4.5270 18 7 3.6227 1.4717 6.0186 19 6 2.7351 1.3997 7.0610 20 1 1.6765 1.3152 6.8640 21 6 3.1973 1.4364 8.3708 22 7 4.4853 1.5398 8.6103 23 14 1.9880 1.3390 9.7912 24 1 0.6063 1.2289 9.2582 25 1 2.2951 0.1470 10.6218 26 1 2.1012 2.5642 10.6226 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 4.8988 2.3054 -1.2212 33 1 3.4504 1.7287 -2.0803 34 1 3.1561 -0.6298 -2.5755 35 1 4.2611 -2.7915 -2.9872 36 1 6.5494 -3.1808 -2.1657 37 1 7.7287 -1.4125 -0.9223 38 1 6.6271 0.7523 -0.5183 39 1 2.4521 1.3815 2.3342 40 1 4.8448 0.6774 3.6591 41 1 4.7044 2.4518 3.6602 42 1 4.5734 1.5472 6.1954 43 1 4.8080 1.5651 9.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838590775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:00 Heat of formation + Delta-G solvation = -53.776844 kcal Electronic energy + Delta-G solvation = -26979.355683 eV Core-core repulsion = 23026.107629 eV Total energy + Delta-G solvation = -3953.248054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50399 -40.31126 -39.74136 -38.56513 -36.31380 -35.52411 -34.86084 -33.38953 -32.67564 -31.77014 -30.96021 -29.37073 -27.14121 -25.94848 -23.92699 -23.50358 -22.67113 -21.51609 -21.38631 -20.23859 -19.91241 -18.39823 -17.73681 -17.53807 -17.11575 -16.67389 -16.53003 -16.33853 -15.96065 -15.92630 -15.82348 -15.65071 -15.26789 -15.14581 -14.30903 -14.24673 -13.99764 -13.70685 -13.57287 -13.55901 -13.46471 -13.19197 -13.06366 -12.91653 -12.51326 -12.45153 -12.19367 -12.11664 -11.91177 -11.61558 -11.58733 -11.16631 -10.57289 -10.45428 -10.11025 -9.93079 -9.79790 -9.68713 -8.51643 -6.01723 0.16827 0.51539 0.93049 1.34568 1.42583 1.56676 1.83578 1.91701 2.09488 2.32094 2.88573 3.09888 3.15477 3.66422 3.80001 3.93282 4.00009 4.14758 4.16198 4.20066 4.25012 4.31318 4.38376 4.40013 4.42472 4.54322 4.68494 4.75173 4.86767 4.92839 5.07609 5.16654 5.21042 5.24207 5.36310 5.38842 5.54717 5.63365 5.65808 5.85833 5.91919 6.11171 6.47450 6.82871 7.03011 7.29598 7.43691 7.93702 8.65537 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002866 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.400867 B = 9765.736081 C =10537.577743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.018 3.982 3 O -0.150 6.150 4 N -0.485 5.485 5 C 0.177 3.823 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.141 4.141 11 C -0.101 4.101 12 C 0.713 3.287 13 O -0.594 6.594 14 N -0.722 5.722 15 C 0.140 3.860 16 C 0.433 3.567 17 O -0.624 6.624 18 N -0.558 5.558 19 C -0.336 4.336 20 H 0.085 0.915 21 C -0.010 4.010 22 N -0.915 5.915 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.409 0.591 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -5.764 -22.872 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 O -0.155 6.155 4 N -0.266 5.266 5 C 0.058 3.942 6 C -0.133 4.133 7 C -0.126 4.126 8 C -0.150 4.150 9 C -0.136 4.136 10 C -0.159 4.159 11 C -0.120 4.120 12 C 0.415 3.585 13 O -0.474 6.474 14 N -0.379 5.379 15 C 0.012 3.988 16 C 0.220 3.780 17 O -0.512 6.512 18 N -0.193 5.193 19 C -0.466 4.466 20 H 0.103 0.897 21 C -0.211 4.211 22 N -0.555 5.555 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.247 0.753 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.233 0.767 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.005 -5.544 -22.803 23.467 hybrid contribution -0.240 -0.216 1.201 1.244 sum -0.235 -5.760 -21.602 22.358 Atomic orbital electron populations 1.21747 0.90553 1.04241 1.03511 1.23292 0.97195 0.84163 1.01365 1.90651 1.01292 1.26813 1.96755 1.49313 0.95005 1.77422 1.04838 1.20690 0.95497 0.94771 0.83252 1.20351 0.95117 0.97342 1.00447 1.21299 1.00149 0.93121 0.98056 1.21457 0.95409 0.97579 1.00519 1.21517 0.95412 0.99522 0.97191 1.21434 1.00989 0.93784 0.99666 1.21368 0.95250 0.97967 0.97366 1.15850 0.84576 0.77974 0.80138 1.90895 1.11398 1.59601 1.85467 1.44799 1.11619 1.77961 1.03535 1.20653 0.92943 1.04198 0.81029 1.20383 0.89370 0.83683 0.84603 1.90477 1.18343 1.57717 1.84645 1.41817 1.10226 1.63065 1.04199 1.19763 0.91406 1.49975 0.85406 0.89671 1.26128 0.98457 0.95779 1.00719 1.69689 1.13962 1.49057 1.22840 0.84813 0.77779 0.78346 0.77046 1.19473 1.19550 1.19598 0.90079 0.88570 0.92736 0.90397 0.94481 0.88561 0.85730 0.84311 0.83587 0.84019 0.85229 0.86464 0.75341 0.88866 0.88622 0.76661 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.02 0.38 7.04 71.98 0.51 0.89 16 3 O -0.15 -3.89 10.19 -38.79 -0.40 -4.29 16 4 N -0.49 -13.33 3.01 -482.30 -1.45 -14.78 16 5 C 0.18 3.79 5.85 85.64 0.50 4.29 16 6 C -0.13 -2.87 5.25 -19.86 -0.10 -2.98 16 7 C -0.11 -1.90 8.93 22.27 0.20 -1.70 16 8 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 9 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 10 C -0.14 -3.01 10.05 22.27 0.22 -2.79 16 11 C -0.10 -2.50 8.78 22.27 0.20 -2.30 16 12 C 0.71 24.27 8.23 179.06 1.47 25.74 16 13 O -0.59 -21.98 13.88 -3.99 -0.06 -22.04 16 14 N -0.72 -26.36 5.50 -482.30 -2.65 -29.02 16 15 C 0.14 5.37 6.15 85.63 0.53 5.89 16 16 C 0.43 20.54 7.85 87.66 0.69 21.23 16 17 O -0.62 -33.26 15.24 -3.09 -0.05 -33.31 16 18 N -0.56 -28.38 5.29 -306.98 -1.62 -30.01 16 19 C -0.34 -18.70 9.68 84.04 0.81 -17.88 16 20 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 22 N -0.92 -48.79 13.05 21.66 0.28 -48.50 16 23 Si 1.00 41.96 29.55 68.60 2.03 43.98 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.37 6.47 -2.39 -0.02 1.35 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 2.11 7.84 -2.38 -0.02 2.09 16 33 H 0.12 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.14 1.80 7.26 -2.91 -0.02 1.78 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.12 3.29 6.76 -2.91 -0.02 3.27 16 39 H 0.41 15.53 6.51 -92.71 -0.60 14.93 16 40 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 43 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -67.65 370.01 2.48 -65.17 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -0.29 Total: 47.92 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 6.68 Total: 24.86 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.44 Total: -122.31 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -0.50 Total: -59.63 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.65 2.48 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838590775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.394 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds