Wall clock time and date at job start Tue Mar 31 2020 12:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00424 * 2 1 4 4 C 1.38513 * 120.08119 * 359.72760 * 3 2 1 5 5 C 1.38281 * 120.02229 * 179.72350 * 4 3 2 6 6 N 1.48030 * 119.90576 * 180.27644 * 5 4 3 7 7 O 1.21795 * 120.00218 * 180.27352 * 6 5 4 8 8 O 1.21796 * 119.99788 * 0.27673 * 6 5 4 9 9 C 1.38286 * 120.19095 * 0.55083 * 5 4 3 10 10 C 1.38181 * 120.16911 * 359.72457 * 9 5 4 11 11 C 1.38796 * 119.97548 * 0.02562 * 10 9 5 12 12 N 1.39837 * 120.09673 * 179.97438 * 11 10 9 13 13 N 1.40097 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.28029 * 120.00342 * 179.97438 * 13 12 11 15 15 C 1.50705 * 119.99554 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46828 * 115.00203 * 16 14 13 18 18 C 1.53002 * 109.46914 * 179.97438 * 17 16 14 19 19 C 1.50692 * 109.47132 * 179.97438 * 18 17 16 20 20 H 1.08009 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00263 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00120 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99948 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 89.99875 * 23 21 19 25 25 H 1.48496 * 109.47160 * 210.00404 * 23 21 19 26 26 H 1.48508 * 109.46820 * 330.00010 * 23 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99850 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99971 * 1 2 3 30 30 H 1.08004 * 119.99013 * 359.97371 * 4 3 2 31 31 H 1.08006 * 119.91194 * 179.70291 * 9 5 4 32 32 H 1.08008 * 120.01168 * 179.97438 * 10 9 5 33 33 H 0.96999 * 120.00470 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.46988 * 89.99773 * 15 14 13 35 35 H 1.08996 * 109.47334 * 209.99996 * 15 14 13 36 36 H 1.08998 * 109.47064 * 330.00065 * 15 14 13 37 37 H 1.09003 * 109.47207 * 234.99693 * 16 14 13 38 38 H 1.08998 * 109.47041 * 355.00227 * 16 14 13 39 39 H 1.09003 * 109.46809 * 299.99733 * 17 16 14 40 40 H 1.08998 * 109.47289 * 60.00176 * 17 16 14 41 41 H 1.09003 * 109.47231 * 300.00376 * 18 17 16 42 42 H 1.08998 * 109.46875 * 60.00074 * 18 17 16 43 43 H 0.97000 * 119.99953 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2938 2.3743 -0.0057 5 6 1.9229 3.6058 0.0001 6 7 1.1160 4.8468 0.0002 7 8 1.6683 5.9323 0.0002 8 8 -0.1003 4.7823 0.0002 9 6 3.3037 3.6813 0.0001 10 6 4.0623 2.5263 0.0000 11 6 3.4381 1.2866 -0.0006 12 7 4.2034 0.1162 -0.0012 13 7 5.6022 0.1939 -0.0006 14 6 6.3029 -0.8776 -0.0007 15 6 5.6229 -2.2225 -0.0007 16 6 7.8075 -0.7940 -0.0007 17 6 8.3505 -1.3746 1.3067 18 6 9.8782 -1.2903 1.3064 19 6 10.4130 -1.8614 2.5943 20 1 9.7315 -2.2465 3.3385 21 6 11.7724 -1.8925 2.8227 22 7 12.2391 -2.3915 3.9465 23 14 12.9512 -1.2272 1.5354 24 1 13.1933 0.2165 1.7849 25 1 14.2373 -1.9656 1.6133 26 1 12.3601 -1.4038 0.1846 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2152 2.3192 -0.0106 31 1 3.7904 4.6454 -0.0003 32 1 5.1406 2.5882 -0.0004 33 1 3.7658 -0.7494 -0.0019 34 1 5.4589 -2.5467 -1.0284 35 1 6.2531 -2.9484 0.5131 36 1 4.6647 -2.1452 0.5131 37 1 8.2030 -1.3624 -0.8425 38 1 8.1135 0.2483 -0.0902 39 1 7.9550 -0.8061 2.1485 40 1 8.0446 -2.4169 1.3962 41 1 10.2734 -1.8588 0.4645 42 1 10.1846 -0.2481 1.2167 43 1 13.1955 -2.4137 4.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841621971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:41 Heat of formation + Delta-G solvation = 15.457072 kcal Electronic energy + Delta-G solvation = -25646.219702 eV Core-core repulsion = 21695.973856 eV Total energy + Delta-G solvation = -3950.245846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28929 -40.85255 -38.66526 -37.84793 -36.65120 -35.40275 -33.63832 -32.05857 -31.01766 -30.32002 -28.61413 -28.10485 -27.82450 -25.73638 -23.75968 -23.03281 -22.28912 -20.38116 -19.94200 -19.55279 -18.71980 -18.18499 -17.63679 -17.28881 -16.84501 -16.61538 -16.39479 -16.06388 -14.97044 -14.78948 -14.43215 -14.32701 -14.18505 -13.87885 -13.70889 -13.37021 -12.73126 -12.46595 -12.37864 -12.27813 -12.15637 -12.14148 -11.81490 -11.77000 -11.67158 -11.29143 -11.26655 -11.20544 -10.87610 -10.40746 -10.23845 -9.97566 -9.83582 -9.69631 -9.30381 -9.24602 -8.59350 -7.89238 -6.09694 -4.08505 -0.31910 0.65435 1.14650 1.29949 1.98652 2.17209 2.57807 3.03858 3.26947 3.34778 3.36564 4.02776 4.24839 4.29850 4.40015 4.41419 4.44952 4.55969 4.63696 4.82491 4.90315 5.00093 5.09804 5.17636 5.19532 5.24603 5.43728 5.47944 5.56378 5.66751 5.70791 5.88926 5.93424 6.21143 6.24677 6.37465 6.45587 6.49603 6.76260 6.78970 7.19693 7.32612 7.54604 7.72693 7.91141 8.47114 8.94667 9.52364 11.03685 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.002169 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.803667 B =12906.782463 C =13959.163578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.058 3.942 4 C -0.106 4.106 5 C -0.071 4.071 6 N 0.041 4.959 7 O -0.169 6.169 8 O -0.180 6.180 9 C -0.036 4.036 10 C -0.140 4.140 11 C 0.266 3.734 12 N -0.573 5.573 13 N -0.268 5.268 14 C 0.126 3.874 15 C -0.164 4.164 16 C -0.068 4.068 17 C -0.096 4.096 18 C -0.013 4.013 19 C -0.523 4.523 20 H 0.071 0.929 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.398 0.602 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 4.763 -11.624 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.008 3.992 4 C -0.127 4.127 5 C -0.157 4.157 6 N 0.556 4.444 7 O -0.383 6.383 8 O -0.392 6.392 9 C -0.056 4.056 10 C -0.163 4.163 11 C 0.159 3.841 12 N -0.291 5.291 13 N -0.073 5.073 14 C -0.066 4.066 15 C -0.223 4.223 16 C -0.108 4.108 17 C -0.135 4.135 18 C -0.051 4.051 19 C -0.561 4.561 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.542 5.542 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.032 0.968 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.580 4.923 -11.531 25.828 hybrid contribution -0.223 -0.487 -0.465 0.710 sum -22.803 4.436 -11.996 26.145 Atomic orbital electron populations 1.23164 0.77233 1.04638 1.01869 1.86021 1.22269 1.24946 1.89687 1.18020 0.89607 0.84978 1.06625 1.20603 1.01603 0.89172 1.01294 1.20502 0.91326 0.83702 1.20184 1.43491 1.01199 1.02648 0.97048 1.94529 1.74395 1.15474 1.53950 1.94501 0.96100 1.94085 1.54515 1.20827 0.90164 1.00789 0.93849 1.20673 1.01875 0.87998 1.05763 1.17235 0.86025 0.87435 0.93355 1.45600 1.01744 1.06075 1.75717 1.74240 0.88454 1.27349 1.17276 1.25346 0.97808 0.90774 0.92663 1.21412 1.01028 0.96324 1.03583 1.20756 0.85075 1.03712 1.01249 1.21472 0.98452 0.99954 0.93586 1.19577 0.90967 0.96661 0.97884 1.21116 0.92563 1.40414 1.01972 0.91098 1.25048 0.98418 0.94804 0.95301 1.69914 1.13688 1.46058 1.24537 0.86767 0.80438 0.79265 0.82731 1.20260 1.21428 1.18944 0.87576 0.92202 0.92133 0.82548 0.82633 0.81739 0.76019 0.89785 0.88535 0.91867 0.89479 0.89969 0.92449 0.92279 0.96406 0.96818 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.58 9.74 -19.68 -0.19 -2.77 16 3 C 0.06 0.54 6.70 -39.06 -0.26 0.28 16 4 C -0.11 -0.98 8.54 -39.46 -0.34 -1.32 16 5 C -0.07 -0.77 6.85 -79.91 -0.55 -1.31 16 6 N 0.04 0.52 4.45 33.98 0.15 0.68 16 7 O -0.17 -2.28 18.44 -29.46 -0.54 -2.82 16 8 O -0.18 -2.36 18.44 -29.46 -0.54 -2.91 16 9 C -0.04 -0.35 9.55 -39.58 -0.38 -0.73 16 10 C -0.14 -1.42 9.51 -39.40 -0.37 -1.79 16 11 C 0.27 2.80 6.74 -83.58 -0.56 2.24 16 12 N -0.57 -6.20 6.28 32.51 0.20 -5.99 16 13 N -0.27 -3.28 10.23 35.60 0.36 -2.91 16 14 C 0.13 1.47 6.55 -78.90 -0.52 0.95 16 15 C -0.16 -1.50 9.46 36.01 0.34 -1.15 16 16 C -0.07 -0.90 5.60 -27.88 -0.16 -1.05 16 17 C -0.10 -1.64 5.03 -26.73 -0.13 -1.77 16 18 C -0.01 -0.29 4.04 -27.89 -0.11 -0.41 16 19 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 20 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 21 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 22 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 23 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 27 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.06 0.25 7.68 -51.93 -0.40 -0.14 16 30 H 0.16 1.19 5.84 -52.48 -0.31 0.89 16 31 H 0.16 1.30 7.60 -52.48 -0.40 0.90 16 32 H 0.17 1.65 7.36 -52.48 -0.39 1.27 16 33 H 0.40 3.79 5.75 -182.60 -1.05 2.74 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.90 6.91 -51.93 -0.36 0.54 16 36 H 0.06 0.53 6.31 -51.93 -0.33 0.20 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.97 7.01 -51.93 -0.36 0.61 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -31.94 367.14 -7.85 -39.79 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.45 Total: -0.62 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.48 Total: -17.77 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.49 Total: -34.70 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.28 Total: -8.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.94 -7.85 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841621971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.251 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds