Wall clock time and date at job start Tue Mar 31 2020 12:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00424 * 2 1 4 4 C 1.38513 * 120.08119 * 359.72760 * 3 2 1 5 5 C 1.38281 * 120.02229 * 179.72350 * 4 3 2 6 6 N 1.48030 * 119.90576 * 180.27644 * 5 4 3 7 7 O 1.21795 * 120.00218 * 180.27352 * 6 5 4 8 8 O 1.21796 * 119.99788 * 0.27673 * 6 5 4 9 9 C 1.38286 * 120.19095 * 0.55083 * 5 4 3 10 10 C 1.38181 * 120.16911 * 359.72457 * 9 5 4 11 11 C 1.38796 * 119.97548 * 0.02562 * 10 9 5 12 12 N 1.39837 * 120.09673 * 179.97438 * 11 10 9 13 13 N 1.40097 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.28029 * 120.00342 * 179.97438 * 13 12 11 15 15 C 1.50705 * 119.99554 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46828 * 115.00203 * 16 14 13 18 18 C 1.53002 * 109.46914 * 179.97438 * 17 16 14 19 19 C 1.50692 * 109.47132 * 179.97438 * 18 17 16 20 20 H 1.08009 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00263 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00120 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99948 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 89.99875 * 23 21 19 25 25 H 1.48496 * 109.47160 * 210.00404 * 23 21 19 26 26 H 1.48508 * 109.46820 * 330.00010 * 23 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99850 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99971 * 1 2 3 30 30 H 1.08004 * 119.99013 * 359.97371 * 4 3 2 31 31 H 1.08006 * 119.91194 * 179.70291 * 9 5 4 32 32 H 1.08008 * 120.01168 * 179.97438 * 10 9 5 33 33 H 0.96999 * 120.00470 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.46988 * 89.99773 * 15 14 13 35 35 H 1.08996 * 109.47334 * 209.99996 * 15 14 13 36 36 H 1.08998 * 109.47064 * 330.00065 * 15 14 13 37 37 H 1.09003 * 109.47207 * 234.99693 * 16 14 13 38 38 H 1.08998 * 109.47041 * 355.00227 * 16 14 13 39 39 H 1.09003 * 109.46809 * 299.99733 * 17 16 14 40 40 H 1.08998 * 109.47289 * 60.00176 * 17 16 14 41 41 H 1.09003 * 109.47231 * 300.00376 * 18 17 16 42 42 H 1.08998 * 109.46875 * 60.00074 * 18 17 16 43 43 H 0.97000 * 119.99953 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2938 2.3743 -0.0057 5 6 1.9229 3.6058 0.0001 6 7 1.1160 4.8468 0.0002 7 8 1.6683 5.9323 0.0002 8 8 -0.1003 4.7823 0.0002 9 6 3.3037 3.6813 0.0001 10 6 4.0623 2.5263 0.0000 11 6 3.4381 1.2866 -0.0006 12 7 4.2034 0.1162 -0.0012 13 7 5.6022 0.1939 -0.0006 14 6 6.3029 -0.8776 -0.0007 15 6 5.6229 -2.2225 -0.0007 16 6 7.8075 -0.7940 -0.0007 17 6 8.3505 -1.3746 1.3067 18 6 9.8782 -1.2903 1.3064 19 6 10.4130 -1.8614 2.5943 20 1 9.7315 -2.2465 3.3385 21 6 11.7724 -1.8925 2.8227 22 7 12.2391 -2.3915 3.9465 23 14 12.9512 -1.2272 1.5354 24 1 13.1933 0.2165 1.7849 25 1 14.2373 -1.9656 1.6133 26 1 12.3601 -1.4038 0.1846 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2152 2.3192 -0.0106 31 1 3.7904 4.6454 -0.0003 32 1 5.1406 2.5882 -0.0004 33 1 3.7658 -0.7494 -0.0019 34 1 5.4589 -2.5467 -1.0284 35 1 6.2531 -2.9484 0.5131 36 1 4.6647 -2.1452 0.5131 37 1 8.2030 -1.3624 -0.8425 38 1 8.1135 0.2483 -0.0902 39 1 7.9550 -0.8061 2.1485 40 1 8.0446 -2.4169 1.3962 41 1 10.2734 -1.8588 0.4645 42 1 10.1846 -0.2481 1.2167 43 1 13.1955 -2.4137 4.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841621971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:40 Heat of formation + Delta-G solvation = -2.614209 kcal Electronic energy + Delta-G solvation = -25647.003332 eV Core-core repulsion = 21695.973856 eV Total energy + Delta-G solvation = -3951.029476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21355 -41.58003 -39.47469 -38.59690 -37.62109 -36.60271 -35.09119 -33.68786 -31.77252 -31.36367 -29.47033 -29.18993 -28.57315 -26.69511 -25.19990 -23.83034 -23.19430 -21.96144 -20.77295 -20.46035 -19.66194 -19.09566 -18.71381 -18.57443 -17.95307 -17.54865 -16.96243 -16.82071 -16.32341 -15.77097 -15.65423 -15.41665 -15.01088 -14.85947 -14.67297 -14.38774 -14.13129 -13.74203 -13.41559 -13.18571 -13.07175 -12.96255 -12.77604 -12.64190 -12.61987 -12.50316 -12.34887 -12.27759 -12.21537 -11.76418 -11.70227 -11.38842 -11.31147 -11.06409 -10.95365 -10.72171 -10.01845 -8.69594 -8.25654 -6.29653 -1.22140 -0.07725 0.25170 0.42164 1.10913 1.36699 1.41132 1.42131 1.53982 1.98982 2.26049 2.40188 3.10655 3.30267 3.50700 3.55510 3.61554 3.64985 4.01261 4.08978 4.22625 4.32397 4.34685 4.35972 4.42887 4.54512 4.58611 4.64015 4.68622 4.73924 4.80887 4.95185 5.02241 5.11192 5.14411 5.19307 5.33486 5.37858 5.59621 5.66690 5.71651 5.73439 6.09526 6.32610 6.55030 6.79710 7.07551 7.35195 8.91181 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.002169 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.803667 B =12906.782463 C =13959.163578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.066 3.934 4 C -0.102 4.102 5 C -0.082 4.082 6 N 0.043 4.957 7 O -0.194 6.194 8 O -0.188 6.188 9 C -0.033 4.033 10 C -0.143 4.143 11 C 0.255 3.745 12 N -0.570 5.570 13 N -0.283 5.283 14 C 0.123 3.877 15 C -0.162 4.162 16 C -0.059 4.059 17 C -0.087 4.087 18 C -0.014 4.014 19 C -0.531 4.531 20 H 0.029 0.971 21 C -0.002 4.002 22 N -0.956 5.956 23 Si 0.952 3.048 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.236 1.236 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.404 0.596 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.109 4.589 -13.916 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.015 3.985 4 C -0.123 4.123 5 C -0.168 4.168 6 N 0.554 4.446 7 O -0.403 6.403 8 O -0.399 6.399 9 C -0.053 4.053 10 C -0.166 4.166 11 C 0.148 3.852 12 N -0.290 5.290 13 N -0.089 5.089 14 C -0.069 4.069 15 C -0.221 4.221 16 C -0.098 4.098 17 C -0.126 4.126 18 C -0.051 4.051 19 C -0.569 4.569 20 H 0.048 0.952 21 C -0.198 4.198 22 N -0.597 5.597 23 Si 0.775 3.225 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.159 1.159 27 H 0.145 0.855 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.191 0.809 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.466 4.778 -13.837 27.658 hybrid contribution -0.067 -0.538 0.335 0.637 sum -23.532 4.240 -13.503 27.460 Atomic orbital electron populations 1.23480 0.75386 1.06393 1.02641 1.86029 1.24138 1.24126 1.89371 1.17980 0.89266 0.85504 1.05727 1.20758 1.02471 0.88500 1.00603 1.20646 0.91546 0.83270 1.21374 1.43730 1.01223 1.03076 0.96620 1.94521 1.74378 1.16312 1.55090 1.94478 0.96607 1.94225 1.54616 1.20931 0.89890 1.01242 0.93260 1.20680 1.01872 0.88052 1.05993 1.17450 0.86662 0.87480 0.93582 1.45534 1.01206 1.06493 1.75734 1.74160 0.89341 1.28002 1.17384 1.25250 0.97082 0.91873 0.92722 1.21443 1.00967 0.94743 1.04946 1.20544 0.86263 1.03598 0.99402 1.21263 0.95433 1.00399 0.95473 1.19560 0.94048 0.96409 0.95110 1.21560 0.92244 1.39739 1.03390 0.95246 1.26091 1.00717 0.95284 0.97702 1.70087 1.14172 1.48257 1.27168 0.85632 0.77560 0.78473 0.80818 1.19578 1.21502 1.15924 0.85453 0.91254 0.91508 0.80938 0.81646 0.81800 0.75278 0.87750 0.88825 0.91171 0.87421 0.90083 0.94172 0.91918 0.95126 0.96273 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.32 -4.53 9.74 -93.34 -0.91 -5.44 16 3 C 0.07 1.12 6.70 22.61 0.15 1.27 16 4 C -0.10 -1.74 8.54 22.35 0.19 -1.55 16 5 C -0.08 -1.69 6.85 36.39 0.25 -1.44 16 6 N 0.04 1.06 4.45 -46.40 -0.21 0.86 16 7 O -0.19 -5.19 18.44 18.89 0.35 -4.85 16 8 O -0.19 -4.79 18.44 18.89 0.35 -4.44 16 9 C -0.03 -0.62 9.55 22.27 0.21 -0.40 16 10 C -0.14 -2.74 9.51 22.39 0.21 -2.53 16 11 C 0.25 4.98 6.74 38.27 0.26 5.24 16 12 N -0.57 -11.29 6.28 -51.06 -0.32 -11.61 16 13 N -0.28 -6.42 10.23 -41.19 -0.42 -6.84 16 14 C 0.12 2.60 6.55 46.53 0.30 2.90 16 15 C -0.16 -2.55 9.46 71.24 0.67 -1.87 16 16 C -0.06 -1.40 5.60 29.85 0.17 -1.23 16 17 C -0.09 -2.87 5.03 30.60 0.15 -2.72 16 18 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 19 C -0.53 -29.43 9.66 25.60 0.25 -29.18 16 20 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 21 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 22 N -0.96 -59.28 13.96 21.45 0.30 -58.99 16 23 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 27 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 29 H 0.07 0.40 7.68 -2.38 -0.02 0.38 16 30 H 0.17 2.28 5.84 -2.91 -0.02 2.26 16 31 H 0.17 2.67 7.60 -2.91 -0.02 2.65 16 32 H 0.16 3.15 7.36 -2.91 -0.02 3.13 16 33 H 0.40 6.83 5.75 -213.32 -1.23 5.60 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.55 6.91 -2.39 -0.02 1.53 16 36 H 0.07 1.01 6.31 -2.39 -0.02 0.99 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 2.00 7.01 -2.39 -0.02 1.99 16 41 H 0.03 1.22 7.20 -2.39 -0.02 1.21 16 42 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.27 367.14 5.31 -64.96 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.23 Total: 12.29 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 4.52 Total: -30.40 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.65 Total: -76.58 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.21 Total: -14.73 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Total: -70.27 5.31 -64.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841621971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.348 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds