Wall clock time and date at job start Tue Mar 31 2020 13:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47287 * 2 1 4 4 C 1.34223 * 117.00273 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00044 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00396 * 179.97438 * 4 3 2 7 7 C 1.50700 * 110.43639 * 300.70141 * 6 4 3 8 8 O 1.21303 * 119.99816 * 239.29537 * 7 6 4 9 9 N 1.34777 * 119.99675 * 59.57406 * 7 6 4 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40644 * 126.08738 * 0.02562 * 10 9 7 12 12 N 1.30901 * 108.39360 * 180.02562 * 11 10 9 13 13 N 1.40074 * 108.40564 * 359.97438 * 12 11 10 14 14 C 1.37320 * 126.07088 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00041 * 179.97438 * 14 13 12 16 16 C 1.38983 * 120.00068 * 359.97438 * 14 13 12 17 17 N 1.31295 * 119.99896 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47020 * 90.00166 * 18 16 14 20 20 H 1.48498 * 109.47255 * 209.99902 * 18 16 14 21 21 H 1.48499 * 109.47324 * 330.00123 * 18 16 14 22 22 C 1.35684 * 126.07711 * 179.71648 * 10 9 7 23 23 C 1.54896 * 110.48452 * 63.24121 * 6 4 3 24 24 C 1.55231 * 102.58761 * 156.67667 * 23 6 4 25 25 C 1.54271 * 104.23401 * 322.08371 * 24 23 6 26 26 C 1.53874 * 106.59659 * 23.61047 * 25 24 23 27 27 H 1.09000 * 109.47093 * 300.00406 * 1 2 3 28 28 H 1.08997 * 109.46870 * 60.00512 * 1 2 3 29 29 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47093 * 239.99594 * 2 1 3 31 31 H 1.09002 * 109.46412 * 119.99479 * 2 1 3 32 32 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 33 33 H 1.08000 * 125.80374 * 359.97438 * 11 10 9 34 34 H 0.97004 * 120.00225 * 179.97438 * 17 16 14 35 35 H 1.07998 * 126.24628 * 359.97438 * 22 10 9 36 36 H 1.08994 * 110.75519 * 275.07068 * 23 6 4 37 37 H 1.09004 * 110.75572 * 38.44145 * 23 6 4 38 38 H 1.09004 * 110.47056 * 203.39474 * 24 23 6 39 39 H 1.09005 * 110.58565 * 80.83017 * 24 23 6 40 40 H 1.08996 * 110.03135 * 264.32571 * 25 24 23 41 41 H 1.08999 * 110.03035 * 142.89680 * 25 24 23 42 42 H 1.08998 * 110.03439 * 240.71235 * 26 25 24 43 43 H 1.09003 * 110.03123 * 119.28590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 6 3.4563 3.6985 -1.2149 8 8 4.2677 4.1356 -2.0036 9 7 2.1396 3.8982 -1.4222 10 6 1.7066 4.6132 -2.5526 11 6 2.5313 5.1732 -3.5447 12 7 1.7692 5.7594 -4.4330 13 7 0.4330 5.5971 -4.0454 14 6 -0.6670 6.0696 -4.7180 15 1 -1.6577 5.8866 -4.3288 16 6 -0.5055 6.7833 -5.8996 17 7 0.6989 7.0063 -6.3725 18 14 -2.0019 7.4255 -6.8149 19 1 -2.3328 8.7888 -6.3277 20 1 -1.7078 7.4775 -8.2695 21 1 -3.1548 6.5208 -6.5750 22 6 0.4182 4.8807 -2.8836 23 6 3.5237 3.6887 1.2950 24 6 4.6327 4.7685 1.4132 25 6 5.9145 4.0484 0.9457 26 6 5.4618 2.8842 0.0473 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.4908 3.5486 -0.7915 33 1 3.6101 5.1281 -3.5690 34 1 0.8116 7.5041 -7.1973 35 1 -0.4588 4.5833 -2.3279 36 1 2.5419 4.1498 1.1884 37 1 3.5452 3.0171 2.1533 38 1 4.7356 5.0976 2.4472 39 1 4.4130 5.6162 0.7640 40 1 6.4622 3.6648 1.8065 41 1 6.5429 4.7353 0.3787 42 1 5.7899 1.9354 0.4719 43 1 5.8706 3.0059 -0.9559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843778367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:07 Heat of formation + Delta-G solvation = -47.663967 kcal Electronic energy + Delta-G solvation = -27802.897732 eV Core-core repulsion = 23849.914753 eV Total energy + Delta-G solvation = -3952.982980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27163 -39.82389 -38.97323 -37.17358 -36.38838 -34.27531 -33.19269 -31.97566 -30.39447 -29.90334 -28.82196 -27.57002 -24.91915 -24.04913 -22.72569 -21.95266 -20.93261 -20.60320 -19.46212 -19.26115 -18.22850 -17.38951 -16.90593 -16.73657 -16.10054 -15.46033 -15.28912 -15.09905 -14.54161 -14.22334 -14.14317 -13.87227 -13.45021 -13.32001 -13.06110 -13.00230 -12.91785 -12.30936 -12.08200 -11.82100 -11.70571 -11.50385 -11.49234 -11.37741 -11.27748 -11.24213 -11.20289 -10.94242 -10.70048 -10.55913 -10.54082 -10.37666 -10.15804 -9.21066 -9.16716 -8.80796 -8.06055 -6.70244 -6.55763 -4.22913 1.93876 2.32557 2.86403 3.03815 3.05160 3.10073 3.52003 3.67724 3.86394 4.11692 4.30903 4.46799 4.58451 4.69657 4.75957 4.80184 4.98620 5.02335 5.08373 5.16274 5.26437 5.29677 5.37268 5.51270 5.54238 5.61391 5.66653 5.82051 5.84137 5.92477 6.09575 6.17241 6.24904 6.28174 6.35253 6.46273 6.89145 6.94913 7.10969 7.23321 7.56036 7.85548 8.15525 8.27505 8.60506 8.81187 9.37747 9.66890 10.40217 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.003555 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.886559 B = 7875.226754 C = 9034.884089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.481 3.519 5 O -0.498 6.498 6 C -0.075 4.075 7 C 0.514 3.486 8 O -0.519 6.519 9 N -0.611 5.611 10 C -0.060 4.060 11 C -0.032 4.032 12 N -0.260 5.260 13 N -0.142 5.142 14 C -0.323 4.323 15 H 0.116 0.884 16 C 0.047 3.953 17 N -0.770 5.770 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.081 4.081 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.175 0.825 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -9.028 15.856 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.271 6.271 4 C 0.323 3.677 5 O -0.385 6.385 6 C -0.079 4.079 7 C 0.298 3.702 8 O -0.396 6.396 9 N -0.254 5.254 10 C -0.166 4.166 11 C -0.208 4.208 12 N -0.091 5.091 13 N 0.091 4.909 14 C -0.456 4.456 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.396 5.396 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.232 4.232 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.140 4.140 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.192 0.808 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.794 -8.257 13.989 16.343 hybrid contribution -1.088 -0.695 0.709 1.473 sum 0.706 -8.951 14.698 17.224 Atomic orbital electron populations 1.21827 0.92303 1.03042 1.03961 1.23071 0.95621 0.79777 1.02576 1.86460 1.24002 1.32882 1.83712 1.23106 0.80799 0.91627 0.72158 1.90642 1.60388 1.42490 1.44973 1.21706 0.99083 0.89348 0.97804 1.19361 0.82746 0.82007 0.86075 1.90602 1.53154 1.50405 1.45404 1.42465 1.06285 1.52590 1.24041 1.17261 0.92485 1.12491 0.94318 1.24095 1.00138 1.02763 0.93801 1.78259 0.85454 1.24119 1.21265 1.44550 1.05337 1.28851 1.12203 1.19868 0.84630 1.35081 1.05974 0.86625 1.25633 0.98231 0.96242 0.96947 1.70217 1.21234 1.29912 1.18255 0.85836 0.80172 0.79497 0.78690 1.19585 1.20097 1.18821 1.21245 0.95974 1.10351 0.95630 1.22637 1.00429 0.97498 0.93665 1.22440 0.94022 0.97898 1.01816 1.22094 0.97680 0.96992 0.98900 1.22134 0.88814 0.99923 1.03118 0.91358 0.90939 0.90252 0.91099 0.91223 0.76386 0.80788 0.91464 0.83692 0.89719 0.90044 0.90830 0.90623 0.91560 0.90903 0.89635 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.35 -4.43 8.73 -39.24 -0.34 -4.77 16 4 C 0.48 6.83 6.59 36.01 0.24 7.07 16 5 O -0.50 -7.92 15.19 -18.75 -0.28 -8.20 16 6 C -0.07 -1.04 0.68 -155.15 -0.11 -1.14 16 7 C 0.51 9.23 6.27 -10.98 -0.07 9.16 16 8 O -0.52 -11.09 12.58 5.54 0.07 -11.02 16 9 N -0.61 -11.12 5.05 -10.00 -0.05 -11.18 16 10 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 11 C -0.03 -0.85 10.85 -17.04 -0.18 -1.04 16 12 N -0.26 -7.55 10.40 30.80 0.32 -7.23 16 13 N -0.14 -3.87 3.74 -11.41 -0.04 -3.92 16 14 C -0.32 -8.50 10.25 -14.82 -0.15 -8.65 16 15 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 16 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 17 N -0.77 -21.47 11.81 55.49 0.66 -20.81 16 18 Si 0.93 18.81 29.55 -169.99 -5.02 13.79 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.08 -1.90 11.49 -16.39 -0.19 -2.08 16 23 C -0.10 -1.12 5.81 -24.55 -0.14 -1.26 16 24 C -0.12 -1.31 6.62 -24.88 -0.16 -1.47 16 25 C -0.12 -1.29 6.80 -25.61 -0.17 -1.47 16 26 C -0.10 -1.36 5.54 -25.61 -0.14 -1.50 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.40 6.06 7.27 -40.82 -0.30 5.76 16 33 H 0.18 4.55 5.92 -52.49 -0.31 4.24 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 36 H 0.08 0.87 7.62 -51.93 -0.40 0.48 16 37 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.09 6.88 -51.93 -0.36 0.73 16 43 H 0.09 1.44 6.86 -51.93 -0.36 1.08 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -33.44 358.20 -6.36 -39.79 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.91 Total: 11.35 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.15 Total: -3.21 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.88 Total: -43.13 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.56 Total: -23.99 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.44 -6.36 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843778367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.872 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds