Wall clock time and date at job start Tue Mar 31 2020 13:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47287 * 2 1 4 4 C 1.34223 * 117.00273 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00044 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00396 * 179.97438 * 4 3 2 7 7 C 1.50700 * 110.43639 * 300.70141 * 6 4 3 8 8 O 1.21303 * 119.99816 * 239.29537 * 7 6 4 9 9 N 1.34777 * 119.99675 * 59.57406 * 7 6 4 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40644 * 126.08738 * 0.02562 * 10 9 7 12 12 N 1.30901 * 108.39360 * 180.02562 * 11 10 9 13 13 N 1.40074 * 108.40564 * 359.97438 * 12 11 10 14 14 C 1.37320 * 126.07088 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00041 * 179.97438 * 14 13 12 16 16 C 1.38983 * 120.00068 * 359.97438 * 14 13 12 17 17 N 1.31295 * 119.99896 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47020 * 90.00166 * 18 16 14 20 20 H 1.48498 * 109.47255 * 209.99902 * 18 16 14 21 21 H 1.48499 * 109.47324 * 330.00123 * 18 16 14 22 22 C 1.35684 * 126.07711 * 179.71648 * 10 9 7 23 23 C 1.54896 * 110.48452 * 63.24121 * 6 4 3 24 24 C 1.55231 * 102.58761 * 156.67667 * 23 6 4 25 25 C 1.54271 * 104.23401 * 322.08371 * 24 23 6 26 26 C 1.53874 * 106.59659 * 23.61047 * 25 24 23 27 27 H 1.09000 * 109.47093 * 300.00406 * 1 2 3 28 28 H 1.08997 * 109.46870 * 60.00512 * 1 2 3 29 29 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47093 * 239.99594 * 2 1 3 31 31 H 1.09002 * 109.46412 * 119.99479 * 2 1 3 32 32 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 33 33 H 1.08000 * 125.80374 * 359.97438 * 11 10 9 34 34 H 0.97004 * 120.00225 * 179.97438 * 17 16 14 35 35 H 1.07998 * 126.24628 * 359.97438 * 22 10 9 36 36 H 1.08994 * 110.75519 * 275.07068 * 23 6 4 37 37 H 1.09004 * 110.75572 * 38.44145 * 23 6 4 38 38 H 1.09004 * 110.47056 * 203.39474 * 24 23 6 39 39 H 1.09005 * 110.58565 * 80.83017 * 24 23 6 40 40 H 1.08996 * 110.03135 * 264.32571 * 25 24 23 41 41 H 1.08999 * 110.03035 * 142.89680 * 25 24 23 42 42 H 1.08998 * 110.03439 * 240.71235 * 26 25 24 43 43 H 1.09003 * 110.03123 * 119.28590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 6 3.4563 3.6985 -1.2149 8 8 4.2677 4.1356 -2.0036 9 7 2.1396 3.8982 -1.4222 10 6 1.7066 4.6132 -2.5526 11 6 2.5313 5.1732 -3.5447 12 7 1.7692 5.7594 -4.4330 13 7 0.4330 5.5971 -4.0454 14 6 -0.6670 6.0696 -4.7180 15 1 -1.6577 5.8866 -4.3288 16 6 -0.5055 6.7833 -5.8996 17 7 0.6989 7.0063 -6.3725 18 14 -2.0019 7.4255 -6.8149 19 1 -2.3328 8.7888 -6.3277 20 1 -1.7078 7.4775 -8.2695 21 1 -3.1548 6.5208 -6.5750 22 6 0.4182 4.8807 -2.8836 23 6 3.5237 3.6887 1.2950 24 6 4.6327 4.7685 1.4132 25 6 5.9145 4.0484 0.9457 26 6 5.4618 2.8842 0.0473 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.4908 3.5486 -0.7915 33 1 3.6101 5.1281 -3.5690 34 1 0.8116 7.5041 -7.1973 35 1 -0.4588 4.5833 -2.3279 36 1 2.5419 4.1498 1.1884 37 1 3.5452 3.0171 2.1533 38 1 4.7356 5.0976 2.4472 39 1 4.4130 5.6162 0.7640 40 1 6.4622 3.6648 1.8065 41 1 6.5429 4.7353 0.3787 42 1 5.7899 1.9354 0.4719 43 1 5.8706 3.0059 -0.9559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843778367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:06 Heat of formation + Delta-G solvation = -68.627171 kcal Electronic energy + Delta-G solvation = -27803.806765 eV Core-core repulsion = 23849.914753 eV Total energy + Delta-G solvation = -3953.892013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48617 -41.52306 -40.43885 -38.34565 -37.49125 -35.99511 -35.01531 -32.80653 -32.25759 -31.13478 -29.82333 -29.29545 -26.82462 -24.91920 -23.99496 -23.02735 -22.78665 -21.71208 -21.17686 -20.50777 -19.62355 -19.03236 -18.03594 -17.80390 -17.45095 -17.16546 -16.85993 -16.31070 -15.97578 -15.65157 -15.35042 -15.11516 -14.93746 -14.82155 -14.55129 -14.24514 -13.69509 -13.49500 -13.32140 -13.28957 -12.97090 -12.90917 -12.84678 -12.62509 -12.45762 -12.40031 -12.23365 -12.11304 -12.07655 -11.87319 -11.58488 -11.55116 -11.34568 -11.02192 -10.84365 -10.70958 -10.10192 -8.55274 -8.46366 -6.23937 0.76273 1.12693 1.34855 1.40919 1.58389 1.62249 1.86982 2.01303 2.23857 2.50040 2.86711 3.07732 3.10055 3.38617 3.61856 3.75734 4.02248 4.06944 4.17552 4.29931 4.34326 4.37752 4.44083 4.46041 4.58858 4.65222 4.78667 4.83778 4.96188 4.96716 5.00631 5.03010 5.07291 5.11822 5.19743 5.23370 5.29152 5.38124 5.40531 5.45266 5.95767 6.29172 6.48115 6.63723 6.73175 7.25613 7.46383 7.67392 8.52993 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.003555 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.886559 B = 7875.226754 C = 9034.884089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.484 3.516 5 O -0.518 6.518 6 C -0.071 4.071 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.603 5.603 10 C -0.046 4.046 11 C -0.058 4.058 12 N -0.309 5.309 13 N -0.165 5.165 14 C -0.353 4.353 15 H 0.142 0.858 16 C -0.006 4.006 17 N -0.825 5.825 18 Si 1.019 2.981 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.243 1.243 22 C -0.076 4.076 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.104 4.104 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.419 0.581 33 H 0.166 0.834 34 H 0.276 0.724 35 H 0.189 0.811 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -9.916 18.502 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.326 3.674 5 O -0.406 6.406 6 C -0.075 4.075 7 C 0.300 3.700 8 O -0.435 6.435 9 N -0.248 5.248 10 C -0.152 4.152 11 C -0.233 4.233 12 N -0.141 5.141 13 N 0.066 4.934 14 C -0.484 4.484 15 H 0.160 0.840 16 C -0.217 4.217 17 N -0.453 5.453 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.166 1.166 22 C -0.226 4.226 23 C -0.136 4.136 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.142 4.142 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.257 0.743 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.206 0.794 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.489 -9.177 16.691 19.054 hybrid contribution -0.310 -0.535 -0.022 0.618 sum -0.799 -9.711 16.669 19.308 Atomic orbital electron populations 1.21849 0.90283 1.04484 1.03919 1.23374 0.97165 0.78552 1.02758 1.86451 1.22858 1.34484 1.83164 1.23068 0.81306 0.91256 0.71737 1.90637 1.60978 1.42990 1.46010 1.21698 0.99431 0.89205 0.97199 1.20118 0.82088 0.81141 0.86661 1.90595 1.54134 1.51760 1.47036 1.42392 1.07047 1.52256 1.23081 1.17315 0.91932 1.11300 0.94650 1.24121 1.00013 1.04057 0.95131 1.78160 0.87025 1.25887 1.23056 1.44842 1.04905 1.30111 1.13571 1.20641 0.85429 1.35629 1.06740 0.84026 1.26873 1.01554 0.95770 0.97523 1.70402 1.24291 1.31517 1.19065 0.84597 0.76069 0.79082 0.76487 1.18839 1.20356 1.16641 1.21963 0.97434 1.08651 0.94566 1.22764 1.00723 0.97574 0.92546 1.22459 0.93554 0.96929 1.03135 1.22113 0.98085 0.95901 0.99264 1.22155 0.88415 1.01441 1.02163 0.90160 0.92120 0.88111 0.92246 0.89815 0.74257 0.81751 0.91426 0.79442 0.89015 0.87059 0.87622 0.93117 0.88659 0.91944 0.88883 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 71.98 0.74 -1.18 16 2 C 0.05 1.00 6.19 71.98 0.45 1.44 16 3 O -0.35 -8.10 8.73 -51.35 -0.45 -8.55 16 4 C 0.48 13.01 6.59 71.24 0.47 13.48 16 5 O -0.52 -15.87 15.19 21.96 0.33 -15.54 16 6 C -0.07 -1.88 0.68 -52.60 -0.04 -1.92 16 7 C 0.51 18.51 6.27 87.66 0.55 19.06 16 8 O -0.56 -24.81 12.58 -3.10 -0.04 -24.85 16 9 N -0.60 -21.51 5.05 -303.92 -1.53 -23.04 16 10 C -0.05 -2.13 6.90 37.73 0.26 -1.87 16 11 C -0.06 -3.20 10.85 85.42 0.93 -2.27 16 12 N -0.31 -18.74 10.40 -56.47 -0.59 -19.33 16 13 N -0.17 -9.16 3.74 -190.01 -0.71 -9.87 16 14 C -0.35 -18.56 10.25 84.01 0.86 -17.70 16 15 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 16 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 17 N -0.82 -47.68 11.81 21.66 0.26 -47.43 16 18 Si 1.02 38.28 29.55 68.60 2.03 40.31 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 20 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.24 -8.24 7.11 99.48 0.71 -7.54 16 22 C -0.08 -3.48 11.49 83.37 0.96 -2.53 16 23 C -0.10 -1.83 5.81 32.01 0.19 -1.65 16 24 C -0.12 -2.32 6.62 31.79 0.21 -2.11 16 25 C -0.12 -2.35 6.80 31.32 0.21 -2.13 16 26 C -0.10 -2.71 5.54 31.32 0.17 -2.54 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.42 11.79 7.27 -92.71 -0.67 11.12 16 33 H 0.17 9.19 5.92 -2.91 -0.02 9.18 16 34 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.19 6.75 8.06 -2.91 -0.02 6.73 16 36 H 0.09 1.60 7.62 -2.39 -0.02 1.59 16 37 H 0.11 1.49 8.05 -2.39 -0.02 1.47 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 2.27 6.88 -2.39 -0.02 2.26 16 43 H 0.06 2.05 6.86 -2.39 -0.02 2.04 16 Total: -1.00 -77.14 358.20 6.09 -71.05 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: 0.37 Total: 38.98 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.43 Total: -1.73 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -2.58 Total: -99.67 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.15 Total: -48.94 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -77.14 6.09 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843778367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.422 kcal (2) G-P(sol) polarization free energy of solvation -77.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds