Wall clock time and date at job start Tue Mar 31 2020 12:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99909 * 2 1 4 4 C 1.46789 * 119.99566 * 179.97438 * 2 1 3 5 5 C 1.40026 * 120.21530 * 0.02562 * 4 2 1 6 6 C 1.37868 * 119.85689 * 179.97438 * 5 4 2 7 7 F 1.35102 * 119.85632 * 180.02562 * 6 5 4 8 8 C 1.38807 * 120.28684 * 0.02562 * 6 5 4 9 9 C 1.38053 * 120.43138 * 359.97438 * 8 6 5 10 10 C 1.50696 * 119.92957 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.47294 * 260.00336 * 10 9 8 12 12 C 1.46847 * 111.00067 * 293.95364 * 11 10 9 13 13 C 1.53038 * 109.52390 * 185.83855 * 12 11 10 14 14 C 1.53120 * 109.28065 * 300.82302 * 13 12 11 15 15 C 1.53119 * 109.15793 * 57.65412 * 14 13 12 16 16 H 1.08996 * 109.50606 * 62.32699 * 15 14 13 17 17 C 1.50702 * 109.50169 * 182.40723 * 15 14 13 18 18 H 1.07996 * 120.00131 * 114.44348 * 17 15 14 19 19 C 1.37882 * 119.99807 * 294.43486 * 17 15 14 20 20 N 1.31512 * 119.99849 * 161.78346 * 19 17 15 21 21 Si 1.86800 * 120.00107 * 341.78689 * 19 17 15 22 22 H 1.48494 * 109.47066 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47295 * 59.99673 * 21 19 17 24 24 H 1.48505 * 109.46714 * 299.99597 * 21 19 17 25 25 C 1.46839 * 111.00306 * 58.16768 * 11 10 9 26 26 C 1.38670 * 120.13412 * 0.26153 * 9 8 6 27 27 O 1.35646 * 120.14121 * 179.72271 * 26 9 8 28 28 H 1.08997 * 109.47230 * 240.00630 * 1 2 3 29 29 H 1.09004 * 109.47000 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47421 * 119.99937 * 1 2 3 31 31 H 1.08010 * 120.07117 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.78381 * 180.02562 * 8 6 5 33 33 H 1.09009 * 109.46924 * 140.00234 * 10 9 8 34 34 H 1.08997 * 109.47516 * 20.00627 * 10 9 8 35 35 H 1.09006 * 109.46324 * 65.82806 * 12 11 10 36 36 H 1.09001 * 109.46884 * 305.85658 * 12 11 10 37 37 H 1.09003 * 109.50443 * 180.88280 * 13 12 11 38 38 H 1.08995 * 109.50261 * 60.76867 * 13 12 11 39 39 H 1.09003 * 109.52289 * 297.74978 * 14 13 12 40 40 H 1.09000 * 109.57397 * 177.58923 * 14 13 12 41 41 H 0.97000 * 119.99868 * 354.67642 * 20 19 17 42 42 H 1.09006 * 109.46328 * 54.13885 * 25 11 10 43 43 H 1.09009 * 109.46232 * 294.17490 * 25 11 10 44 44 H 0.96703 * 113.99718 * 89.99934 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5452 -2.4865 0.0006 6 6 2.2419 -3.6762 0.0006 7 9 1.5707 -4.8487 0.0001 8 6 3.6300 -3.6746 0.0011 9 6 4.3278 -2.4834 0.0011 10 6 5.8347 -2.4948 0.0023 11 7 6.3252 -2.2575 1.3665 12 6 5.9858 -0.9025 1.8195 13 6 6.6349 -0.6407 3.1804 14 6 6.1313 -1.6772 4.1886 15 6 6.4544 -3.0811 3.6698 16 1 7.5348 -3.1984 3.5858 17 6 5.9097 -4.1092 4.6277 18 1 5.1156 -4.7710 4.3153 19 6 6.4254 -4.2049 5.9029 20 7 5.7450 -4.8242 6.8426 21 14 8.0905 -3.4548 6.2957 22 1 8.4161 -3.6933 7.7247 23 1 8.0494 -1.9936 6.0340 24 1 9.1300 -4.0818 5.4403 25 6 5.8105 -3.2722 2.2947 26 6 3.6450 -1.2765 0.0061 27 8 4.3305 -0.1061 0.0117 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4651 -2.4918 -0.0003 32 1 4.1675 -4.6113 0.0007 33 1 6.2045 -1.7106 -0.6584 34 1 6.1911 -3.4633 -0.3486 35 1 4.9034 -0.8102 1.9096 36 1 6.3532 -0.1749 1.0958 37 1 6.3699 0.3594 3.5236 38 1 7.7181 -0.7192 3.0880 39 1 5.0531 -1.5731 4.3103 40 1 6.6230 -1.5216 5.1489 41 1 4.8483 -5.1458 6.6600 42 1 6.0506 -4.2659 1.9162 43 1 4.7289 -3.1688 2.3826 44 1 4.5299 0.2372 -0.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:31 Heat of formation + Delta-G solvation = -99.478152 kcal Electronic energy + Delta-G solvation = -28294.131374 eV Core-core repulsion = 24318.981601 eV Total energy + Delta-G solvation = -3975.149773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.04949 -40.86438 -39.09881 -37.71969 -36.75242 -34.27751 -32.64963 -31.61206 -30.12248 -29.76346 -29.40081 -26.32775 -24.66856 -24.14320 -22.85585 -21.50947 -20.96977 -19.86601 -18.92733 -18.30761 -17.52808 -17.31847 -17.17665 -16.13586 -15.64018 -15.59633 -15.24659 -15.06372 -14.83900 -14.40564 -14.18429 -13.93781 -13.82616 -13.43934 -13.30433 -12.78028 -12.58285 -12.53986 -12.47066 -12.28675 -12.04295 -11.99674 -11.76677 -11.48454 -11.16504 -10.88394 -10.57976 -10.41181 -10.03121 -9.86464 -9.80744 -9.62360 -9.27445 -9.17248 -8.69555 -8.67116 -8.20033 -7.87983 -6.39303 -4.01032 0.25863 0.80971 2.09698 3.20906 3.45609 3.49742 3.65539 3.67891 3.90587 4.01524 4.28633 4.51543 4.56723 4.63238 4.76746 4.92538 5.00491 5.07653 5.22004 5.29497 5.38334 5.44465 5.59437 5.64558 5.66349 5.74923 5.82580 5.83178 5.95910 6.11132 6.17955 6.26704 6.40317 6.46430 6.49218 6.60230 6.71720 6.91159 7.00398 7.27370 7.35630 7.45221 7.48970 7.60144 7.68225 8.24988 8.42278 8.94352 9.66004 10.98409 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.004311 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.215024 B = 6493.876714 C = 7109.405433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.438 6.438 4 C -0.179 4.179 5 C -0.100 4.100 6 C 0.080 3.920 7 F -0.135 7.135 8 C -0.092 4.092 9 C -0.126 4.126 10 C 0.098 3.902 11 N -0.527 5.527 12 C 0.068 3.932 13 C -0.122 4.122 14 C -0.124 4.124 15 C 0.028 3.972 16 H 0.029 0.971 17 C -0.598 4.598 18 H 0.053 0.947 19 C 0.035 3.965 20 N -0.908 5.908 21 Si 1.041 2.959 22 H -0.289 1.289 23 H -0.273 1.273 24 H -0.283 1.283 25 C 0.074 3.926 26 C 0.169 3.831 27 O -0.465 6.465 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.266 0.734 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 7.644 -19.006 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.312 6.312 4 C -0.180 4.180 5 C -0.119 4.119 6 C 0.061 3.939 7 F -0.114 7.114 8 C -0.111 4.111 9 C -0.129 4.129 10 C -0.030 4.030 11 N -0.249 5.249 12 C -0.060 4.060 13 C -0.160 4.160 14 C -0.162 4.162 15 C 0.008 3.992 16 H 0.047 0.953 17 C -0.636 4.636 18 H 0.071 0.929 19 C -0.170 4.170 20 N -0.542 5.542 21 Si 0.870 3.130 22 H -0.215 1.215 23 H -0.199 1.199 24 H -0.210 1.210 25 C -0.053 4.053 26 C 0.122 3.878 27 O -0.276 6.276 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.877 8.233 -17.181 19.938 hybrid contribution -2.419 -0.547 -1.583 2.942 sum -8.296 7.687 -18.764 21.909 Atomic orbital electron populations 1.22260 0.93646 1.05264 1.04562 1.22189 0.91537 0.87164 0.71953 1.90587 1.71962 1.33667 1.35002 1.20721 0.93729 0.95029 1.08570 1.21236 1.00866 0.90039 0.99778 1.17484 0.90164 0.81362 1.04938 1.91530 1.80278 1.45513 1.94063 1.21282 0.92167 0.99574 0.98121 1.21063 0.99815 0.91465 1.00536 1.21249 0.85543 1.02969 0.93259 1.62481 1.57568 1.04038 1.00773 1.22112 0.98392 0.89035 0.96438 1.21708 1.00441 0.98647 0.95173 1.22104 0.99960 0.96217 0.97898 1.18988 0.96236 0.92970 0.91001 0.95325 1.21945 1.23097 1.19866 0.98697 0.92925 1.25721 1.03554 0.95583 0.92156 1.70845 1.12311 1.37046 1.33982 0.84115 0.76147 0.76921 0.75820 1.21485 1.19904 1.20974 1.22153 0.96605 0.92988 0.93527 1.18433 0.88274 0.86012 0.95097 1.85031 1.74612 1.35369 1.32586 0.88754 0.89533 0.88912 0.83641 0.83763 0.89920 0.89742 0.94242 0.91387 0.93009 0.92150 0.93603 0.92199 0.92378 0.92041 0.95772 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 8.93 36.01 0.32 -1.11 16 2 C 0.39 4.41 7.22 -30.85 -0.22 4.19 16 3 O -0.44 -6.21 15.89 -16.38 -0.26 -6.47 16 4 C -0.18 -2.10 5.88 -104.95 -0.62 -2.72 16 5 C -0.10 -1.07 9.44 -39.05 -0.37 -1.43 16 6 C 0.08 0.98 7.28 -39.51 -0.29 0.70 16 7 F -0.14 -1.74 17.26 2.25 0.04 -1.71 16 8 C -0.09 -1.17 8.79 -39.44 -0.35 -1.51 16 9 C -0.13 -1.62 3.97 -104.53 -0.42 -2.04 16 10 C 0.10 1.28 5.40 -4.98 -0.03 1.25 16 11 N -0.53 -9.02 4.86 -236.11 -1.15 -10.17 16 12 C 0.07 1.16 3.79 -3.83 -0.01 1.14 16 13 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 14 C -0.12 -2.82 4.97 -26.61 -0.13 -2.95 16 15 C 0.03 0.66 1.84 -91.69 -0.17 0.49 16 16 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 17 C -0.60 -16.92 8.82 -34.44 -0.30 -17.23 16 18 H 0.05 1.60 7.99 -52.49 -0.42 1.18 16 19 C 0.03 1.01 5.34 -17.82 -0.10 0.91 16 20 N -0.91 -28.21 13.70 55.43 0.76 -27.45 16 21 Si 1.04 25.70 26.42 -169.99 -4.49 21.21 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.26 5.57 56.52 0.32 -5.95 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.07 1.52 3.99 -3.84 -0.02 1.51 16 26 C 0.17 2.15 5.46 -38.60 -0.21 1.94 16 27 O -0.47 -5.70 7.48 -40.56 -0.30 -6.01 16 28 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.15 1.12 7.05 -52.48 -0.37 0.75 16 32 H 0.14 1.71 8.03 -52.49 -0.42 1.29 16 33 H 0.08 0.91 7.78 -51.92 -0.40 0.51 16 34 H 0.08 1.01 7.99 -51.93 -0.42 0.59 16 35 H 0.04 0.74 5.53 -51.93 -0.29 0.45 16 36 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.42 4.86 -51.93 -0.25 1.17 16 41 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 42 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 43 H 0.02 0.52 6.88 -51.92 -0.36 0.17 16 44 H 0.39 3.11 9.06 45.56 0.41 3.53 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -33.45 347.39 -8.67 -42.12 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.43 Total: 2.55 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -3.07 Total: -19.32 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.39 Total: -37.62 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.56 Total: -12.48 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -4.49 Total: 21.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.45 -8.67 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.356 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds