Wall clock time and date at job start Tue Mar 31 2020 12:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99909 * 2 1 4 4 C 1.46789 * 119.99566 * 179.97438 * 2 1 3 5 5 C 1.40026 * 120.21530 * 0.02562 * 4 2 1 6 6 C 1.37868 * 119.85689 * 179.97438 * 5 4 2 7 7 F 1.35102 * 119.85632 * 180.02562 * 6 5 4 8 8 C 1.38807 * 120.28684 * 0.02562 * 6 5 4 9 9 C 1.38053 * 120.43138 * 359.97438 * 8 6 5 10 10 C 1.50696 * 119.92957 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.47294 * 260.00336 * 10 9 8 12 12 C 1.46847 * 111.00067 * 293.95364 * 11 10 9 13 13 C 1.53038 * 109.52390 * 185.83855 * 12 11 10 14 14 C 1.53120 * 109.28065 * 300.82302 * 13 12 11 15 15 C 1.53119 * 109.15793 * 57.65412 * 14 13 12 16 16 H 1.08996 * 109.50606 * 62.32699 * 15 14 13 17 17 C 1.50702 * 109.50169 * 182.40723 * 15 14 13 18 18 H 1.07996 * 120.00131 * 114.44348 * 17 15 14 19 19 C 1.37882 * 119.99807 * 294.43486 * 17 15 14 20 20 N 1.31512 * 119.99849 * 161.78346 * 19 17 15 21 21 Si 1.86800 * 120.00107 * 341.78689 * 19 17 15 22 22 H 1.48494 * 109.47066 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47295 * 59.99673 * 21 19 17 24 24 H 1.48505 * 109.46714 * 299.99597 * 21 19 17 25 25 C 1.46839 * 111.00306 * 58.16768 * 11 10 9 26 26 C 1.38670 * 120.13412 * 0.26153 * 9 8 6 27 27 O 1.35646 * 120.14121 * 179.72271 * 26 9 8 28 28 H 1.08997 * 109.47230 * 240.00630 * 1 2 3 29 29 H 1.09004 * 109.47000 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47421 * 119.99937 * 1 2 3 31 31 H 1.08010 * 120.07117 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.78381 * 180.02562 * 8 6 5 33 33 H 1.09009 * 109.46924 * 140.00234 * 10 9 8 34 34 H 1.08997 * 109.47516 * 20.00627 * 10 9 8 35 35 H 1.09006 * 109.46324 * 65.82806 * 12 11 10 36 36 H 1.09001 * 109.46884 * 305.85658 * 12 11 10 37 37 H 1.09003 * 109.50443 * 180.88280 * 13 12 11 38 38 H 1.08995 * 109.50261 * 60.76867 * 13 12 11 39 39 H 1.09003 * 109.52289 * 297.74978 * 14 13 12 40 40 H 1.09000 * 109.57397 * 177.58923 * 14 13 12 41 41 H 0.97000 * 119.99868 * 354.67642 * 20 19 17 42 42 H 1.09006 * 109.46328 * 54.13885 * 25 11 10 43 43 H 1.09009 * 109.46232 * 294.17490 * 25 11 10 44 44 H 0.96703 * 113.99718 * 89.99934 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5452 -2.4865 0.0006 6 6 2.2419 -3.6762 0.0006 7 9 1.5707 -4.8487 0.0001 8 6 3.6300 -3.6746 0.0011 9 6 4.3278 -2.4834 0.0011 10 6 5.8347 -2.4948 0.0023 11 7 6.3252 -2.2575 1.3665 12 6 5.9858 -0.9025 1.8195 13 6 6.6349 -0.6407 3.1804 14 6 6.1313 -1.6772 4.1886 15 6 6.4544 -3.0811 3.6698 16 1 7.5348 -3.1984 3.5858 17 6 5.9097 -4.1092 4.6277 18 1 5.1156 -4.7710 4.3153 19 6 6.4254 -4.2049 5.9029 20 7 5.7450 -4.8242 6.8426 21 14 8.0905 -3.4548 6.2957 22 1 8.4161 -3.6933 7.7247 23 1 8.0494 -1.9936 6.0340 24 1 9.1300 -4.0818 5.4403 25 6 5.8105 -3.2722 2.2947 26 6 3.6450 -1.2765 0.0061 27 8 4.3305 -0.1061 0.0117 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4651 -2.4918 -0.0003 32 1 4.1675 -4.6113 0.0007 33 1 6.2045 -1.7106 -0.6584 34 1 6.1911 -3.4633 -0.3486 35 1 4.9034 -0.8102 1.9096 36 1 6.3532 -0.1749 1.0958 37 1 6.3699 0.3594 3.5236 38 1 7.7181 -0.7192 3.0880 39 1 5.0531 -1.5731 4.3103 40 1 6.6230 -1.5216 5.1489 41 1 4.8483 -5.1458 6.6600 42 1 6.0506 -4.2659 1.9162 43 1 4.7289 -3.1688 2.3826 44 1 4.5299 0.2372 -0.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:30 Heat of formation + Delta-G solvation = -121.932425 kcal Electronic energy + Delta-G solvation = -28295.105065 eV Core-core repulsion = 24318.981601 eV Total energy + Delta-G solvation = -3976.123463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.02725 -41.83742 -40.20999 -38.99694 -37.66720 -35.87050 -34.36860 -32.81628 -31.87770 -30.75452 -30.20266 -27.54142 -26.53068 -25.16869 -24.16360 -22.75794 -22.53634 -20.97688 -20.25942 -19.64664 -19.43135 -18.33882 -18.12001 -17.18156 -16.67602 -16.55162 -16.51374 -16.00288 -15.85986 -15.70805 -15.67935 -15.30925 -15.15624 -14.82932 -14.55455 -14.34878 -14.08434 -13.82582 -13.58714 -13.17709 -13.12410 -13.05409 -13.02613 -12.78039 -12.63092 -12.28219 -12.16657 -11.87192 -11.73413 -11.69568 -11.41082 -11.01541 -10.72077 -10.70388 -10.44236 -10.22400 -9.65315 -9.26615 -8.72928 -6.35103 -0.65049 -0.11461 1.22072 1.46753 1.53102 1.73368 2.30544 2.50536 2.82248 3.01929 3.04730 3.10270 3.12514 3.47660 3.75117 3.96851 4.02606 4.12634 4.16468 4.21851 4.31543 4.41264 4.52175 4.54436 4.56922 4.60746 4.68857 4.74782 4.79967 4.85905 4.87908 4.95386 4.98431 5.06917 5.10427 5.20059 5.24036 5.30372 5.50133 5.54180 5.73501 5.90514 6.04695 6.22943 6.29661 6.45333 6.58807 6.69693 7.40586 8.63429 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.004311 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.215024 B = 6493.876714 C = 7109.405433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.475 6.475 4 C -0.192 4.192 5 C -0.084 4.084 6 C 0.061 3.939 7 F -0.142 7.142 8 C -0.101 4.101 9 C -0.137 4.137 10 C 0.098 3.902 11 N -0.528 5.528 12 C 0.075 3.925 13 C -0.118 4.118 14 C -0.120 4.120 15 C 0.024 3.976 16 H 0.030 0.970 17 C -0.600 4.600 18 H 0.014 0.986 19 C -0.016 4.016 20 N -0.940 5.940 21 Si 1.080 2.920 22 H -0.292 1.292 23 H -0.244 1.244 24 H -0.264 1.264 25 C 0.091 3.909 26 C 0.166 3.834 27 O -0.476 6.476 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.179 0.821 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.024 0.976 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.048 0.952 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.004 0.996 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 9.523 -20.952 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.275 3.725 3 O -0.351 6.351 4 C -0.193 4.193 5 C -0.102 4.102 6 C 0.042 3.958 7 F -0.120 7.120 8 C -0.121 4.121 9 C -0.140 4.140 10 C -0.029 4.029 11 N -0.250 5.250 12 C -0.052 4.052 13 C -0.156 4.156 14 C -0.158 4.158 15 C 0.005 3.995 16 H 0.048 0.952 17 C -0.638 4.638 18 H 0.032 0.968 19 C -0.214 4.214 20 N -0.576 5.576 21 Si 0.901 3.099 22 H -0.218 1.218 23 H -0.168 1.168 24 H -0.189 1.189 25 C -0.037 4.037 26 C 0.119 3.881 27 O -0.290 6.290 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.196 0.804 32 H 0.162 0.838 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.444 10.114 -19.180 22.356 hybrid contribution -2.666 -1.180 -1.048 3.098 sum -8.110 8.934 -20.227 23.553 Atomic orbital electron populations 1.22306 0.90333 1.06199 1.06428 1.22717 0.93261 0.86160 0.70412 1.90574 1.73006 1.34583 1.36985 1.20970 0.93694 0.95888 1.08772 1.21534 1.02434 0.88867 0.97413 1.17662 0.90239 0.81800 1.06130 1.91512 1.80314 1.45948 1.94252 1.21420 0.92741 0.99802 0.98140 1.20987 0.99642 0.91606 1.01771 1.21352 0.85822 1.04674 0.91069 1.62400 1.57709 1.03079 1.01772 1.22076 0.97403 0.89527 0.96222 1.21694 1.00971 0.98055 0.94885 1.21959 0.98536 0.96654 0.98638 1.18949 0.96079 0.92428 0.92087 0.95231 1.22191 1.21699 1.20120 0.99827 0.96784 1.27138 1.06485 0.95451 0.92283 1.70971 1.12038 1.39539 1.35084 0.83647 0.72314 0.78113 0.75788 1.21819 1.16844 1.18898 1.21769 0.95047 0.94142 0.92770 1.18597 0.88903 0.86020 0.94552 1.84951 1.74596 1.35145 1.34260 0.87473 0.89227 0.86088 0.80415 0.83752 0.87124 0.88736 0.95779 0.88548 0.91219 0.91163 0.95837 0.93395 0.94064 0.92395 0.97745 0.73483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 8.93 71.24 0.64 -1.59 16 2 C 0.40 8.08 7.22 27.92 0.20 8.28 16 3 O -0.47 -12.85 15.89 17.89 0.28 -12.57 16 4 C -0.19 -4.18 5.88 -20.08 -0.12 -4.29 16 5 C -0.08 -1.63 9.44 22.62 0.21 -1.41 16 6 C 0.06 1.46 7.28 22.32 0.16 1.62 16 7 F -0.14 -3.59 17.26 44.97 0.78 -2.81 16 8 C -0.10 -2.54 8.79 22.36 0.20 -2.35 16 9 C -0.14 -3.38 3.97 -19.81 -0.08 -3.45 16 10 C 0.10 2.34 5.40 85.56 0.46 2.81 16 11 N -0.53 -17.03 4.86 -900.93 -4.38 -21.41 16 12 C 0.08 2.38 3.79 86.33 0.33 2.71 16 13 C -0.12 -4.16 6.09 30.65 0.19 -3.97 16 14 C -0.12 -5.37 4.97 30.67 0.15 -5.21 16 15 C 0.02 1.15 1.84 -11.49 -0.02 1.13 16 16 H 0.03 1.43 6.79 -2.39 -0.02 1.41 16 17 C -0.60 -35.04 8.82 25.60 0.23 -34.82 16 18 H 0.01 0.89 7.99 -2.91 -0.02 0.87 16 19 C -0.02 -0.94 5.34 84.66 0.45 -0.49 16 20 N -0.94 -60.46 13.70 21.45 0.29 -60.17 16 21 Si 1.08 51.43 26.42 68.60 1.81 53.25 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.24 -10.44 5.57 99.48 0.55 -9.89 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.09 3.71 3.99 86.33 0.34 4.05 16 26 C 0.17 3.98 5.46 22.90 0.13 4.10 16 27 O -0.48 -10.68 7.48 -68.64 -0.51 -11.19 16 28 H 0.11 0.99 8.09 -2.39 -0.02 0.97 16 29 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 30 H 0.12 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.18 2.16 7.05 -2.91 -0.02 2.14 16 32 H 0.14 3.48 8.03 -2.91 -0.02 3.45 16 33 H 0.11 2.04 7.78 -2.38 -0.02 2.02 16 34 H 0.09 2.07 7.99 -2.39 -0.02 2.05 16 35 H 0.02 0.86 5.53 -2.38 -0.01 0.84 16 36 H 0.10 2.56 7.27 -2.39 -0.02 2.54 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 2.22 4.86 -2.39 -0.01 2.21 16 41 H 0.25 16.37 8.73 -92.71 -0.81 15.56 16 42 H 0.06 2.37 8.12 -2.38 -0.02 2.35 16 43 H 0.00 0.19 6.88 -2.38 -0.02 0.18 16 44 H 0.40 5.56 9.06 -74.06 -0.67 4.89 16 Total: -1.00 -75.12 347.39 1.92 -73.20 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.17 Total: 14.59 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 3.47 Total: -32.89 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -4.08 Total: -81.58 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.23 Total: -23.76 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 1.81 Total: 53.25 kcal Total: -75.12 1.92 -73.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.729 kcal (2) G-P(sol) polarization free energy of solvation -75.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds