Wall clock time and date at job start Tue Mar 31 2020 13:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46504 * 119.99902 * 2 1 4 4 C 1.34773 * 120.00401 * 179.97438 * 2 1 3 5 5 O 1.21515 * 120.00137 * 0.02562 * 4 2 1 6 6 O 1.34639 * 120.00672 * 179.97438 * 4 2 1 7 7 C 1.45201 * 117.00556 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.46855 * 64.99859 * 8 7 6 10 10 C 1.34772 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00132 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.39245 * 119.99997 * 185.19043 * 12 10 9 14 14 C 1.39481 * 119.83111 * 324.01545 * 13 12 10 15 15 C 1.36378 * 120.16864 * 180.29893 * 14 13 12 16 16 C 1.40869 * 119.82458 * 359.48611 * 15 14 13 17 17 C 1.41159 * 120.15790 * 180.25150 * 16 15 14 18 18 H 1.08004 * 119.99801 * 205.03563 * 17 16 15 19 19 C 1.39892 * 120.00151 * 25.03972 * 17 16 15 20 20 N 1.30873 * 120.00281 * 17.75049 * 19 17 16 21 21 Si 1.86808 * 119.99782 * 197.75574 * 19 17 16 22 22 H 1.48500 * 109.47012 * 94.97725 * 21 19 17 23 23 H 1.48496 * 109.47081 * 214.98118 * 21 19 17 24 24 H 1.48498 * 109.46939 * 334.97680 * 21 19 17 25 25 C 1.40867 * 119.67318 * 0.51521 * 16 15 14 26 26 C 1.36365 * 119.82975 * 359.73258 * 25 16 15 27 27 H 1.09001 * 109.47305 * 239.99801 * 1 2 3 28 28 H 1.08999 * 109.47593 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47288 * 120.00414 * 1 2 3 30 30 H 1.08999 * 109.47157 * 269.99802 * 3 2 1 31 31 H 1.08994 * 109.47244 * 29.99788 * 3 2 1 32 32 H 1.08998 * 109.46990 * 150.00418 * 3 2 1 33 33 H 1.08997 * 109.47000 * 59.99906 * 7 6 4 34 34 H 1.09001 * 109.46903 * 300.00591 * 7 6 4 35 35 H 1.08995 * 109.46784 * 305.00469 * 8 7 6 36 36 H 1.08992 * 109.47159 * 184.99557 * 8 7 6 37 37 H 0.97001 * 119.99751 * 0.02562 * 9 8 7 38 38 H 0.96997 * 119.99991 * 5.17578 * 12 10 9 39 39 H 1.08004 * 119.91631 * 0.03225 * 14 13 12 40 40 H 1.08001 * 120.08185 * 179.70403 * 15 14 13 41 41 H 0.96996 * 120.00321 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.08257 * 179.71651 * 25 16 15 43 43 H 1.08004 * 119.91664 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5314 -2.2195 0.0005 6 8 3.4852 -1.1672 0.0000 7 6 4.1445 -2.4609 0.0000 8 6 5.6613 -2.2604 0.0000 9 7 6.0689 -1.6176 1.2519 10 6 7.3689 -1.3413 1.4754 11 8 8.2034 -1.6250 0.6378 12 7 7.7439 -0.7505 2.6271 13 6 9.0695 -0.3668 2.8134 14 6 10.0986 -1.1529 2.2953 15 6 11.3995 -0.7869 2.4789 16 6 11.7021 0.3942 3.1846 17 6 13.0459 0.7825 3.3742 18 1 13.3133 1.4122 4.2099 19 6 14.0313 0.3518 2.4795 20 7 13.6911 -0.1038 1.3008 21 14 15.8330 0.4268 2.9675 22 1 16.2534 -0.8891 3.5126 23 1 16.6554 0.7544 1.7753 24 1 16.0222 1.4746 4.0025 25 6 10.6572 1.1827 3.7050 26 6 9.3615 0.8012 3.5177 27 1 -0.3634 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8899 30 1 2.3791 1.5834 -1.0276 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1384 0.5138 33 1 3.8513 -3.0181 -0.8897 34 1 3.8519 -3.0177 0.8902 35 1 5.9442 -1.6284 -0.8417 36 1 6.1556 -3.2277 -0.0894 37 1 5.4031 -1.3917 1.9202 38 1 7.0904 -0.5923 3.3263 39 1 9.8649 -2.0560 1.7510 40 1 12.1954 -1.3991 2.0812 41 1 14.3743 -0.4028 0.6806 42 1 10.8818 2.0870 4.2510 43 1 8.5593 1.4045 3.9164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854249371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:54 Heat of formation + Delta-G solvation = -76.270631 kcal Electronic energy + Delta-G solvation = -25881.923839 eV Core-core repulsion = 21927.700381 eV Total energy + Delta-G solvation = -3954.223458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83379 -39.82066 -37.70663 -37.18778 -35.91095 -34.79947 -34.21794 -32.90071 -30.21412 -29.39762 -28.71560 -28.37751 -26.55353 -24.89035 -23.02333 -21.45966 -21.12960 -20.94926 -20.00661 -18.42833 -17.98214 -17.39305 -17.24074 -17.10210 -16.50409 -15.52664 -15.39758 -15.13857 -14.78879 -14.47289 -14.18027 -13.87853 -13.71871 -13.31126 -13.08842 -13.00863 -12.91183 -12.69469 -12.63100 -12.41405 -12.04618 -11.89364 -11.78553 -11.42283 -11.10998 -10.97397 -10.90538 -10.88041 -10.46789 -9.97067 -9.84272 -9.47740 -9.24611 -9.17974 -8.91744 -8.62803 -7.46303 -6.95337 -6.68819 -4.24049 1.76047 2.46286 2.72437 3.02786 3.10733 3.12276 3.14456 3.21138 3.47348 3.75603 3.97153 4.49832 4.64256 4.65297 4.69246 4.75346 4.83918 4.92652 5.02950 5.16898 5.27766 5.36990 5.43851 5.64780 5.75918 5.90411 5.98232 6.19248 6.43966 6.56863 6.85962 6.86609 6.89953 7.10504 7.16250 7.34750 7.39557 7.67713 7.90193 7.90815 8.06186 8.11696 8.32197 8.53505 8.69143 8.93912 8.97818 9.16793 10.24176 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.002062 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.721024 B =13577.732304 C =14012.688532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.605 5.605 3 C 0.082 3.918 4 C 0.647 3.353 5 O -0.573 6.573 6 O -0.363 6.363 7 C 0.076 3.924 8 C 0.143 3.857 9 N -0.752 5.752 10 C 0.694 3.306 11 O -0.575 6.575 12 N -0.667 5.667 13 C 0.010 3.990 14 C -0.085 4.085 15 C -0.157 4.157 16 C 0.105 3.895 17 C -0.461 4.461 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.789 5.789 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.216 4.216 26 C -0.106 4.106 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.393 0.607 38 H 0.390 0.610 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.068 0.056 -1.791 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.346 5.346 3 C -0.061 4.061 4 C 0.402 3.598 5 O -0.462 6.462 6 O -0.277 6.277 7 C 0.001 3.999 8 C 0.019 3.981 9 N -0.410 5.410 10 C 0.395 3.605 11 O -0.452 6.452 12 N -0.312 5.312 13 C -0.082 4.082 14 C -0.105 4.105 15 C -0.177 4.177 16 C 0.102 3.898 17 C -0.490 4.490 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.414 5.414 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.236 4.236 26 C -0.126 4.126 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.320 -0.650 -2.839 21.518 hybrid contribution 0.057 0.279 0.671 0.729 sum -21.263 -0.371 -2.168 21.376 Atomic orbital electron populations 1.21643 0.76346 1.02821 1.02766 1.46519 1.06890 1.04450 1.76729 1.21868 0.97618 0.84108 1.02507 1.18046 0.81182 0.84123 0.76500 1.91006 1.68997 1.30407 1.55765 1.86306 1.18668 1.35998 1.86684 1.23355 0.91039 0.81553 1.03946 1.21226 0.89929 0.99525 0.87470 1.45048 1.07022 1.67760 1.21174 1.16008 0.82147 0.79577 0.82777 1.90940 1.50053 1.58093 1.46069 1.42051 1.10171 1.63166 1.15862 1.16985 0.80903 0.98599 1.11722 1.20578 0.92271 0.98629 0.99063 1.20998 0.94588 0.97854 1.04260 1.17670 0.92726 0.90050 0.89358 1.19537 0.91814 1.27748 1.09936 0.90438 1.25930 1.01651 0.92954 0.93849 1.69868 1.36149 1.30636 1.04743 0.86312 0.81727 0.79593 0.79133 1.19381 1.20348 1.18623 1.20520 0.91897 1.00996 1.10213 1.20031 0.96226 0.94332 1.02055 0.91769 0.89850 0.91800 0.92248 0.90699 0.90033 0.89327 0.90319 0.90367 0.89004 0.77333 0.77728 0.87459 0.86354 0.90849 0.88714 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.16 59.84 0.61 1.22 16 2 N -0.60 -4.99 3.27 -195.41 -0.64 -5.63 16 3 C 0.08 0.48 10.41 59.85 0.62 1.11 16 4 C 0.65 7.19 8.40 54.05 0.45 7.65 16 5 O -0.57 -7.89 16.13 -19.28 -0.31 -8.20 16 6 O -0.36 -3.77 9.00 -40.32 -0.36 -4.14 16 7 C 0.08 0.70 5.60 37.16 0.21 0.90 16 8 C 0.14 1.57 6.07 -4.04 -0.02 1.54 16 9 N -0.75 -9.51 5.51 -65.23 -0.36 -9.87 16 10 C 0.69 12.53 8.40 -86.93 -0.73 11.80 16 11 O -0.57 -13.10 13.78 5.29 0.07 -13.02 16 12 N -0.67 -11.87 5.31 -14.10 -0.07 -11.94 16 13 C 0.01 0.24 6.30 -83.57 -0.53 -0.29 16 14 C -0.09 -2.16 8.61 -39.79 -0.34 -2.51 16 15 C -0.16 -4.27 8.63 -39.26 -0.34 -4.61 16 16 C 0.10 2.84 5.57 -106.80 -0.59 2.24 16 17 C -0.46 -12.35 9.03 -37.85 -0.34 -12.69 16 18 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 19 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 20 N -0.79 -21.08 10.98 55.54 0.61 -20.47 16 21 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16 26 C -0.11 -2.34 9.90 -39.79 -0.39 -2.74 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.24 7.79 -51.93 -0.40 -0.17 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.28 7.92 -51.93 -0.41 -0.14 16 32 H 0.08 0.56 7.37 -51.93 -0.38 0.18 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.39 3.93 8.49 -40.82 -0.35 3.58 16 38 H 0.39 5.35 8.84 -40.82 -0.36 4.99 16 39 H 0.11 2.76 6.24 -52.48 -0.33 2.43 16 40 H 0.12 3.34 6.19 -52.49 -0.32 3.01 16 41 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -34.71 369.00 -8.32 -43.03 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.91 Total: 11.02 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.87 Total: -0.23 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.46 Total: -47.92 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.60 Total: -25.36 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.71 -8.32 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854249371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.240 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds