Wall clock time and date at job start Tue Mar 31 2020 13:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 117.00168 * 2 1 4 4 O 1.21511 * 119.99941 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00155 * 179.97438 * 3 2 1 6 6 C 1.46502 * 120.00324 * 359.97438 * 5 3 2 7 7 C 1.46504 * 120.00377 * 179.97438 * 5 3 2 8 8 C 1.53002 * 109.47046 * 269.99964 * 7 5 3 9 9 N 1.46503 * 109.47033 * 179.97438 * 8 7 5 10 10 C 1.34775 * 119.99955 * 179.97438 * 9 8 7 11 11 O 1.21582 * 119.99839 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00049 * 180.02562 * 10 9 8 13 13 C 1.39238 * 120.00064 * 184.28658 * 12 10 9 14 14 C 1.39477 * 119.83512 * 324.70584 * 13 12 10 15 15 C 1.36370 * 120.17106 * 180.29495 * 14 13 12 16 16 C 1.40873 * 119.82515 * 359.47762 * 15 14 13 17 17 C 1.41157 * 120.16217 * 180.25396 * 16 15 14 18 18 H 1.08003 * 119.99672 * 215.01794 * 17 16 15 19 19 C 1.39893 * 120.00333 * 35.01428 * 17 16 15 20 20 N 1.30880 * 119.99961 * 355.54010 * 19 17 16 21 21 Si 1.86802 * 120.00211 * 175.54551 * 19 17 16 22 22 H 1.48501 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47417 * 119.99955 * 21 19 17 24 24 H 1.48499 * 109.46704 * 240.00023 * 21 19 17 25 25 C 1.40866 * 119.67271 * 0.51904 * 16 15 14 26 26 C 1.36373 * 119.82749 * 359.73332 * 25 16 15 27 27 H 1.08994 * 109.47424 * 300.00861 * 1 2 3 28 28 H 1.09003 * 109.46701 * 60.00739 * 1 2 3 29 29 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46886 * 270.00758 * 6 5 3 31 31 H 1.08999 * 109.46666 * 30.00051 * 6 5 3 32 32 H 1.08996 * 109.47585 * 150.00442 * 6 5 3 33 33 H 1.08995 * 109.47364 * 149.99557 * 7 5 3 34 34 H 1.09003 * 109.46599 * 29.99681 * 7 5 3 35 35 H 1.08995 * 109.47372 * 59.99598 * 8 7 5 36 36 H 1.09000 * 109.46476 * 299.99351 * 8 7 5 37 37 H 0.96997 * 119.99768 * 0.02562 * 9 8 7 38 38 H 0.96999 * 119.99950 * 4.28545 * 12 10 9 39 39 H 1.08002 * 119.91733 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.09068 * 179.69917 * 15 14 13 41 41 H 0.96992 * 120.00602 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.08491 * 179.70716 * 25 16 15 43 43 H 1.08006 * 119.91358 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.2071 0.0415 0.0017 7 6 4.0743 2.5754 0.0000 8 6 4.3065 3.0289 -1.4428 9 7 4.9712 4.3345 -1.4433 10 6 5.2780 4.9339 -2.6108 11 8 5.0036 4.3909 -3.6634 12 7 5.8899 6.1347 -2.6113 13 6 6.1266 6.7950 -3.8141 14 6 6.4449 6.0618 -4.9572 15 6 6.6839 6.7018 -6.1374 16 6 6.5979 8.1064 -6.2028 17 6 6.8386 8.7758 -7.4220 18 1 7.3216 9.7418 -7.4214 19 6 6.4517 8.1879 -8.6310 20 7 5.9463 6.9806 -8.6395 21 14 6.6564 9.1260 -10.2334 22 1 7.2459 10.4601 -9.9542 23 1 7.5551 8.3671 -11.1399 24 1 5.3305 9.2966 -10.8799 25 6 6.2758 8.8400 -5.0441 26 6 6.0445 8.1862 -3.8698 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 4.4044 -0.2626 1.0296 31 1 3.6588 -0.7482 -0.5119 32 1 5.1516 0.2211 -0.5118 33 1 5.0320 2.4955 0.5143 34 1 3.4460 3.3035 0.5130 35 1 3.3489 3.1088 -1.9571 36 1 4.9348 2.3007 -1.9557 37 1 5.1910 4.7671 -0.6035 38 1 6.1654 6.5391 -1.7738 39 1 6.5065 4.9848 -4.9065 40 1 6.9351 6.1331 -7.0206 41 1 5.6777 6.5731 -9.4777 42 1 6.2127 9.9174 -5.0856 43 1 5.7971 8.7473 -2.9807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854250244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:15 Heat of formation + Delta-G solvation = -73.085291 kcal Electronic energy + Delta-G solvation = -25865.161719 eV Core-core repulsion = 21911.076388 eV Total energy + Delta-G solvation = -3954.085331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85744 -39.85710 -37.78124 -37.22276 -36.04858 -34.65335 -34.19382 -32.81600 -30.10143 -29.40063 -28.62070 -28.05699 -26.63985 -24.89093 -23.45251 -21.45038 -21.02442 -20.87793 -19.94164 -18.48411 -17.95390 -17.33623 -17.22776 -17.04942 -16.50810 -15.56930 -15.43171 -15.04181 -14.67918 -14.42113 -14.29173 -13.92287 -13.82798 -13.68803 -13.19849 -12.95199 -12.75199 -12.62543 -12.37750 -12.31196 -12.03141 -11.79228 -11.54283 -11.39663 -11.12401 -11.07952 -10.85925 -10.85179 -10.45252 -9.93874 -9.81999 -9.56215 -9.26255 -9.06505 -8.88854 -8.69806 -7.45047 -6.80000 -6.52705 -4.26376 1.72200 2.46995 2.73806 3.04596 3.11305 3.14943 3.18324 3.22491 3.60475 3.75737 4.04184 4.59492 4.61258 4.66722 4.78033 4.79613 4.83438 4.91445 5.04534 5.13912 5.17891 5.36438 5.59781 5.71031 5.73802 5.90080 6.01063 6.19529 6.43106 6.56723 6.85116 6.87932 6.89348 7.11371 7.21642 7.34805 7.43946 7.71938 7.88926 7.91992 8.08409 8.16492 8.36550 8.52187 8.74720 8.99952 9.00617 9.15802 10.38544 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002110 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.856271 B =13265.151557 C =13843.606110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.647 3.353 4 O -0.564 6.564 5 N -0.595 5.595 6 C 0.082 3.918 7 C 0.122 3.878 8 C 0.125 3.875 9 N -0.750 5.750 10 C 0.696 3.304 11 O -0.572 6.572 12 N -0.668 5.668 13 C 0.025 3.975 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.097 3.903 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.809 5.809 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.203 4.203 26 C -0.117 4.117 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.392 0.608 38 H 0.391 0.609 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.277 0.723 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -13.672 19.049 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.401 3.599 4 O -0.452 6.452 5 N -0.336 5.336 6 C -0.061 4.061 7 C 0.000 4.000 8 C -0.001 4.001 9 N -0.409 5.409 10 C 0.396 3.604 11 O -0.448 6.448 12 N -0.314 5.314 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.095 3.905 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.436 5.436 21 Si 0.739 3.261 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.223 4.223 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.226 0.774 38 H 0.224 0.776 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.486 -14.104 17.899 23.225 hybrid contribution -0.036 0.764 0.069 0.768 sum -4.522 -13.340 17.968 22.831 Atomic orbital electron populations 1.23225 0.74233 1.03532 1.02929 1.86230 1.24291 1.30889 1.86945 1.18083 0.83167 0.82281 0.76362 1.91039 1.64157 1.34887 1.55151 1.46406 1.02382 1.08173 1.76619 1.21854 0.96274 0.85641 1.02309 1.21604 0.98075 0.83390 0.96963 1.21422 0.98323 0.84171 0.96234 1.44868 1.66504 1.22053 1.07427 1.15965 0.78963 0.81704 0.83759 1.90947 1.59137 1.64985 1.29725 1.42077 1.61180 1.19291 1.08821 1.17088 1.13899 0.90514 0.85256 1.20670 0.99454 0.98818 0.92498 1.21303 1.03460 0.95143 0.96385 1.17730 0.88706 0.92102 0.91978 1.19489 1.35296 1.04334 0.90358 0.90668 1.25887 0.93224 0.94699 1.00865 1.69803 1.32263 1.13137 1.28411 0.86170 0.78578 0.80331 0.80980 1.18664 1.20054 1.20065 1.20672 1.09961 0.98058 0.93583 1.20054 1.04246 0.92002 0.97409 0.91823 0.91641 0.87890 0.92191 0.90188 0.90363 0.88966 0.88730 0.91224 0.91436 0.77443 0.77603 0.87363 0.85249 0.91212 0.88565 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.59 9.39 -40.31 -0.38 -3.97 16 3 C 0.65 7.54 8.40 54.05 0.45 7.99 16 4 O -0.56 -8.41 15.71 -19.28 -0.30 -8.72 16 5 N -0.60 -5.40 2.87 -187.41 -0.54 -5.94 16 6 C 0.08 0.48 10.44 59.85 0.63 1.10 16 7 C 0.12 1.03 5.52 -4.04 -0.02 1.01 16 8 C 0.12 1.50 6.00 -4.04 -0.02 1.47 16 9 N -0.75 -9.53 5.56 -65.23 -0.36 -9.89 16 10 C 0.70 12.83 8.40 -86.92 -0.73 12.10 16 11 O -0.57 -13.48 13.76 5.29 0.07 -13.40 16 12 N -0.67 -11.95 5.31 -14.10 -0.07 -12.02 16 13 C 0.03 0.57 6.31 -83.57 -0.53 0.04 16 14 C -0.09 -2.41 8.61 -39.79 -0.34 -2.76 16 15 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 16 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 17 C -0.46 -12.63 9.02 -37.86 -0.34 -12.97 16 18 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -22.13 10.61 55.54 0.59 -21.54 16 21 Si 0.91 19.55 29.56 -169.99 -5.03 14.52 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.20 -5.00 9.74 -39.26 -0.38 -5.38 16 26 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.47 7.37 -51.93 -0.38 0.09 16 32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 3.44 8.49 -40.82 -0.35 3.09 16 38 H 0.39 5.26 8.83 -40.82 -0.36 4.90 16 39 H 0.11 2.81 6.22 -52.49 -0.33 2.48 16 40 H 0.13 3.72 6.15 -52.49 -0.32 3.40 16 41 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 42 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 43 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -36.08 368.30 -8.00 -44.09 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.89 Total: 10.75 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.64 Total: 0.57 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.39 Total: -49.40 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.61 Total: -26.09 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.08 -8.00 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854250244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.000 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds