Wall clock time and date at job start Tue Mar 31 2020 12:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47393 * 2 1 4 4 C 1.46499 * 119.99777 * 270.00275 * 3 2 1 5 5 C 1.50705 * 109.46985 * 269.99449 * 4 3 2 6 6 H 1.08004 * 119.99769 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00230 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47232 * 119.99822 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00354 * 9 7 5 13 13 C 1.34775 * 120.00356 * 89.99623 * 3 2 1 14 14 O 1.21276 * 120.00102 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99686 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46776 * 179.97438 * 15 13 3 17 17 C 1.34763 * 117.00007 * 180.02562 * 16 15 13 18 18 O 1.21521 * 119.99447 * 0.02562 * 17 16 15 19 19 C 1.47285 * 120.00200 * 180.02562 * 17 16 15 20 20 C 1.41350 * 126.42538 * 359.97438 * 19 17 16 21 21 N 1.30431 * 108.01251 * 180.24651 * 20 19 17 22 22 N 1.39935 * 108.91787 * 359.64324 * 21 20 19 23 23 C 1.46494 * 125.74588 * 180.18845 * 22 21 20 24 24 C 1.52997 * 117.50285 * 163.82344 * 23 22 21 25 25 C 1.52998 * 60.00196 * 252.51178 * 24 23 22 26 26 C 1.34226 * 108.51001 * 0.36186 * 22 21 20 27 27 H 1.08990 * 109.47271 * 299.99960 * 1 2 3 28 28 H 1.08999 * 109.46828 * 60.00670 * 1 2 3 29 29 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47394 * 239.99181 * 2 1 3 31 31 H 1.09002 * 109.47149 * 120.00026 * 2 1 3 32 32 H 1.09003 * 109.47601 * 29.99104 * 4 3 2 33 33 H 1.08999 * 109.47684 * 149.99820 * 4 3 2 34 34 H 0.96995 * 120.00320 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46794 * 60.00567 * 15 13 3 36 36 H 1.08991 * 109.47613 * 300.00051 * 15 13 3 37 37 H 1.08002 * 125.99154 * 359.97438 * 20 19 17 38 38 H 1.09002 * 115.54959 * 309.53899 * 23 22 21 39 39 H 1.09005 * 117.49597 * 0.02562 * 24 23 22 40 40 H 1.09005 * 117.50075 * 145.02172 * 24 23 22 41 41 H 1.08996 * 117.49826 * 252.50558 * 25 24 23 42 42 H 1.09001 * 117.51714 * 107.47932 * 25 24 23 43 43 H 1.08008 * 126.29375 * 179.76259 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0953 -3.4176 10 1 6.6009 1.2404 -2.4168 11 1 5.9203 1.4160 -4.7380 12 1 6.6210 3.3963 -3.5263 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9912 1.3064 2.4722 16 8 2.3064 2.1958 3.5758 17 6 2.1347 1.7103 4.8211 18 8 1.7331 0.5744 4.9803 19 6 2.4339 2.5561 5.9891 20 6 2.9056 3.8883 5.9619 21 7 3.0529 4.2893 7.1942 22 7 2.6806 3.2520 8.0565 23 6 2.6996 3.3074 9.5202 24 6 1.9134 2.2358 10.2781 25 6 1.3950 3.6745 10.2303 26 6 2.3067 2.1963 7.3166 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6875 -2.0285 33 1 2.0956 3.1409 -1.1385 34 1 3.6751 3.5153 -4.4445 35 1 2.6210 0.4187 2.5302 36 1 0.9432 1.0127 2.5298 37 1 3.1123 4.4704 5.0760 38 1 3.6307 3.6581 9.9654 39 1 1.3823 1.4892 9.6875 40 1 2.3273 1.8810 11.2220 41 1 1.4678 4.2662 11.1428 42 1 0.5226 3.8750 9.6083 43 1 1.9689 1.2410 7.6904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859890304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:55 Heat of formation + Delta-G solvation = -6.919689 kcal Electronic energy + Delta-G solvation = -26154.261538 eV Core-core repulsion = 22203.045363 eV Total energy + Delta-G solvation = -3951.216175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.76593 -40.11609 -38.81883 -37.68887 -36.19171 -35.25339 -32.82202 -31.68810 -30.83032 -30.14251 -29.01915 -26.59847 -24.76373 -23.32307 -23.06513 -22.84471 -22.30528 -20.83436 -20.29571 -18.73298 -18.34682 -17.02845 -16.66041 -16.54080 -16.32256 -16.19282 -15.67990 -15.24511 -15.03200 -14.58672 -14.31316 -14.17755 -13.56163 -13.43726 -13.27801 -13.15865 -12.83077 -12.51898 -12.25742 -12.08767 -12.03487 -11.70894 -11.57195 -11.52530 -11.21637 -11.14168 -10.90661 -10.82779 -10.58564 -10.47047 -10.41608 -10.12730 -9.85897 -9.62012 -9.04591 -8.95284 -8.43271 -7.71965 -6.04053 -4.08642 1.07943 1.75960 1.87656 2.59604 2.92553 3.10476 3.30260 3.31239 3.39155 3.43767 3.82730 3.93958 4.03023 4.21261 4.34104 4.45566 4.57628 4.82981 4.90232 4.93190 5.03926 5.11687 5.18109 5.22817 5.27795 5.30741 5.33532 5.40777 5.50951 5.61871 5.76399 6.02759 6.17079 6.21837 6.43265 6.44881 6.47956 7.02749 7.23741 7.42467 7.50532 7.84021 7.92675 8.22620 8.33296 8.87759 9.02703 9.56406 11.04131 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002422 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.623851 B =11558.904822 C =12383.494447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.052 3.948 16 O -0.324 6.324 17 C 0.545 3.455 18 O -0.525 6.525 19 C -0.276 4.276 20 C 0.109 3.891 21 N -0.293 5.293 22 N -0.335 5.335 23 C 0.077 3.923 24 C -0.170 4.170 25 C -0.172 4.172 26 C 0.135 3.865 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.205 0.795 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -4.981 26.117 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.025 4.025 16 O -0.238 6.238 17 C 0.390 3.610 18 O -0.416 6.416 19 C -0.289 4.289 20 C -0.079 4.079 21 N -0.111 5.111 22 N -0.112 5.112 23 C -0.025 4.025 24 C -0.208 4.208 25 C -0.210 4.210 26 C -0.016 4.016 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.222 0.778 38 H 0.163 0.837 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.429 -3.581 26.834 27.611 hybrid contribution 0.653 -1.088 -1.043 1.643 sum -4.776 -4.669 25.791 26.641 Atomic orbital electron populations 1.22233 0.96570 1.01657 1.02419 1.21504 0.93728 0.83984 1.03022 1.48198 1.63899 1.13399 1.07134 1.19330 0.96454 0.93732 0.77600 1.21471 0.96868 1.31911 1.06267 0.92328 1.24937 0.97902 0.94906 0.96395 1.69938 1.35616 1.33471 1.14315 0.86434 0.84589 0.78076 0.78272 1.19787 1.20991 1.20858 1.19715 0.79675 0.87150 0.84294 1.90711 1.44460 1.17489 1.86747 1.22943 1.02680 0.92622 0.84252 1.86596 1.78797 1.44536 1.13899 1.19953 0.73740 0.84640 0.82620 1.90815 1.44456 1.19411 1.86927 1.19257 1.21761 0.97046 0.90794 1.24461 0.94148 0.93521 0.95794 1.77335 1.23260 1.10331 1.00199 1.47899 1.48353 1.09442 1.05512 1.21862 0.98762 1.07548 0.74363 1.23499 1.02067 0.93052 1.02173 1.23506 0.96902 0.97810 1.02785 1.22824 0.95061 0.93566 0.90180 0.93096 0.91817 0.91938 0.89466 0.91710 0.94653 0.93687 0.92750 0.88681 0.88758 0.77844 0.83718 0.87436 0.86254 0.86724 0.87705 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 10.80 7.75 -10.99 -0.09 10.72 16 14 O -0.52 -13.37 16.08 -14.10 -0.23 -13.60 16 15 C 0.05 0.87 4.51 36.01 0.16 1.03 16 16 O -0.32 -5.57 9.60 -47.35 -0.45 -6.02 16 17 C 0.55 8.29 7.95 34.41 0.27 8.56 16 18 O -0.53 -8.45 16.69 -19.28 -0.32 -8.77 16 19 C -0.28 -3.56 6.13 -105.08 -0.64 -4.21 16 20 C 0.11 1.38 11.87 -16.96 -0.20 1.18 16 21 N -0.29 -3.65 12.50 30.87 0.39 -3.26 16 22 N -0.34 -3.29 3.90 -54.30 -0.21 -3.50 16 23 C 0.08 0.46 7.12 -67.93 -0.48 -0.02 16 24 C -0.17 -0.57 9.97 -26.73 -0.27 -0.84 16 25 C -0.17 -0.76 10.46 -26.73 -0.28 -1.04 16 26 C 0.14 1.36 10.62 -16.55 -0.18 1.18 16 27 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.43 7.39 -51.93 -0.38 1.04 16 36 H 0.09 1.36 7.18 -51.93 -0.37 0.99 16 37 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.15 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.11 0.36 6.98 -51.93 -0.36 -0.01 16 40 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.19 1.35 7.20 -52.48 -0.38 0.97 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -36.33 376.94 -7.59 -43.92 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.93 Total: -1.75 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.79 Total: 9.10 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.48 Total: -45.46 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.00 Total: -28.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.33 -7.59 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859890304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.996 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds