Wall clock time and date at job start Tue Mar 31 2020 12:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47393 * 2 1 4 4 C 1.46499 * 119.99777 * 270.00275 * 3 2 1 5 5 C 1.50705 * 109.46985 * 269.99449 * 4 3 2 6 6 H 1.08004 * 119.99769 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00230 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47232 * 119.99822 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00354 * 9 7 5 13 13 C 1.34775 * 120.00356 * 89.99623 * 3 2 1 14 14 O 1.21276 * 120.00102 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99686 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46776 * 179.97438 * 15 13 3 17 17 C 1.34763 * 117.00007 * 180.02562 * 16 15 13 18 18 O 1.21521 * 119.99447 * 0.02562 * 17 16 15 19 19 C 1.47285 * 120.00200 * 180.02562 * 17 16 15 20 20 C 1.41350 * 126.42538 * 359.97438 * 19 17 16 21 21 N 1.30431 * 108.01251 * 180.24651 * 20 19 17 22 22 N 1.39935 * 108.91787 * 359.64324 * 21 20 19 23 23 C 1.46494 * 125.74588 * 180.18845 * 22 21 20 24 24 C 1.52997 * 117.50285 * 163.82344 * 23 22 21 25 25 C 1.52998 * 60.00196 * 252.51178 * 24 23 22 26 26 C 1.34226 * 108.51001 * 0.36186 * 22 21 20 27 27 H 1.08990 * 109.47271 * 299.99960 * 1 2 3 28 28 H 1.08999 * 109.46828 * 60.00670 * 1 2 3 29 29 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47394 * 239.99181 * 2 1 3 31 31 H 1.09002 * 109.47149 * 120.00026 * 2 1 3 32 32 H 1.09003 * 109.47601 * 29.99104 * 4 3 2 33 33 H 1.08999 * 109.47684 * 149.99820 * 4 3 2 34 34 H 0.96995 * 120.00320 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46794 * 60.00567 * 15 13 3 36 36 H 1.08991 * 109.47613 * 300.00051 * 15 13 3 37 37 H 1.08002 * 125.99154 * 359.97438 * 20 19 17 38 38 H 1.09002 * 115.54959 * 309.53899 * 23 22 21 39 39 H 1.09005 * 117.49597 * 0.02562 * 24 23 22 40 40 H 1.09005 * 117.50075 * 145.02172 * 24 23 22 41 41 H 1.08996 * 117.49826 * 252.50558 * 25 24 23 42 42 H 1.09001 * 117.51714 * 107.47932 * 25 24 23 43 43 H 1.08008 * 126.29375 * 179.76259 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0953 -3.4176 10 1 6.6009 1.2404 -2.4168 11 1 5.9203 1.4160 -4.7380 12 1 6.6210 3.3963 -3.5263 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9912 1.3064 2.4722 16 8 2.3064 2.1958 3.5758 17 6 2.1347 1.7103 4.8211 18 8 1.7331 0.5744 4.9803 19 6 2.4339 2.5561 5.9891 20 6 2.9056 3.8883 5.9619 21 7 3.0529 4.2893 7.1942 22 7 2.6806 3.2520 8.0565 23 6 2.6996 3.3074 9.5202 24 6 1.9134 2.2358 10.2781 25 6 1.3950 3.6745 10.2303 26 6 2.3067 2.1963 7.3166 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6875 -2.0285 33 1 2.0956 3.1409 -1.1385 34 1 3.6751 3.5153 -4.4445 35 1 2.6210 0.4187 2.5302 36 1 0.9432 1.0127 2.5298 37 1 3.1123 4.4704 5.0760 38 1 3.6307 3.6581 9.9654 39 1 1.3823 1.4892 9.6875 40 1 2.3273 1.8810 11.2220 41 1 1.4678 4.2662 11.1428 42 1 0.5226 3.8750 9.6083 43 1 1.9689 1.2410 7.6904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859890304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:51 Heat of formation + Delta-G solvation = -29.309328 kcal Electronic energy + Delta-G solvation = -26155.232426 eV Core-core repulsion = 22203.045363 eV Total energy + Delta-G solvation = -3952.187063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62342 -41.40538 -40.38164 -38.15441 -37.47994 -36.92446 -34.92481 -32.48579 -31.85000 -31.62952 -30.48629 -28.40408 -25.74113 -24.75692 -24.11051 -23.81991 -23.26897 -21.69796 -21.16422 -20.24277 -19.34559 -18.62688 -18.19562 -17.85328 -17.71211 -17.17420 -16.86103 -16.64311 -16.21471 -15.91563 -15.71499 -15.11560 -14.82857 -14.65192 -14.50338 -14.16411 -13.98402 -13.85373 -13.65385 -13.56600 -13.26583 -13.04949 -12.68912 -12.53518 -12.51671 -12.48538 -12.20738 -12.02861 -12.01747 -11.75157 -11.70579 -11.67244 -11.45584 -10.70060 -10.64440 -10.64212 -9.90517 -9.51956 -8.22334 -6.36490 0.19808 0.89704 1.01186 1.37027 1.39664 1.44385 1.51998 1.65166 2.05560 2.34140 2.45575 2.57792 3.07717 3.41720 3.46867 3.51356 3.66013 3.76450 3.85165 3.90655 3.99981 4.02825 4.19087 4.31291 4.40896 4.48704 4.61907 4.66204 4.73562 4.91224 4.92374 4.97168 5.05034 5.07737 5.19571 5.22931 5.31484 5.38766 5.56326 5.75156 5.81679 6.05589 6.34787 6.59132 6.71794 6.73576 7.23612 7.38562 8.85267 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002422 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.623851 B =11558.904822 C =12383.494447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.065 3.935 16 O -0.345 6.345 17 C 0.549 3.451 18 O -0.535 6.535 19 C -0.306 4.306 20 C 0.099 3.901 21 N -0.317 5.317 22 N -0.327 5.327 23 C 0.043 3.957 24 C -0.145 4.145 25 C -0.171 4.171 26 C 0.155 3.845 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.200 0.800 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.090 0.910 43 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -7.453 28.649 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.012 4.012 16 O -0.261 6.261 17 C 0.396 3.604 18 O -0.427 6.427 19 C -0.319 4.319 20 C -0.089 4.089 21 N -0.135 5.135 22 N -0.102 5.102 23 C -0.057 4.057 24 C -0.183 4.183 25 C -0.209 4.209 26 C 0.002 3.998 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.217 0.783 38 H 0.173 0.827 39 H 0.131 0.869 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.109 0.891 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.411 -6.092 29.397 30.505 hybrid contribution 0.585 -0.300 -1.704 1.826 sum -4.826 -6.392 27.693 28.828 Atomic orbital electron populations 1.22176 0.94336 1.03785 1.01829 1.21869 0.95554 0.80969 1.04428 1.48197 1.63666 1.15277 1.05641 1.18791 0.95574 0.91676 0.79802 1.21733 0.97819 1.32001 1.06512 0.92748 1.25854 1.02383 0.94496 0.96466 1.70052 1.37676 1.34210 1.14802 0.85363 0.79026 0.77978 0.78402 1.19145 1.19354 1.20854 1.20551 0.78308 0.86654 0.85842 1.90675 1.47080 1.20157 1.87751 1.22812 1.04750 0.91958 0.81662 1.86597 1.79351 1.45307 1.14816 1.20184 0.73280 0.84771 0.82189 1.90791 1.45323 1.19737 1.86847 1.19303 1.24196 0.97118 0.91252 1.24463 0.94535 0.93846 0.96040 1.77269 1.24037 1.11820 1.00396 1.48240 1.46645 1.08536 1.06809 1.22376 1.00233 1.10833 0.72304 1.23683 0.99973 0.92252 1.02371 1.23570 0.95141 0.99365 1.02795 1.23257 0.93077 0.94383 0.89082 0.92391 0.93753 0.88359 0.90021 0.88325 0.95217 0.98252 0.92384 0.86414 0.85950 0.78337 0.82739 0.86948 0.83665 0.84911 0.89128 0.76164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.09 2.83 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.48 2.46 -826.17 -2.03 -27.51 16 4 C 0.26 14.22 5.16 85.63 0.44 14.67 16 5 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.50 21.71 7.75 87.66 0.68 22.39 16 14 O -0.58 -31.33 16.08 15.78 0.25 -31.07 16 15 C 0.06 2.08 4.51 71.24 0.32 2.40 16 16 O -0.35 -11.90 9.60 -50.35 -0.48 -12.38 16 17 C 0.55 16.27 7.95 70.20 0.56 16.83 16 18 O -0.54 -16.16 16.69 19.77 0.33 -15.83 16 19 C -0.31 -7.77 6.13 -20.16 -0.12 -7.89 16 20 C 0.10 2.59 11.87 85.67 1.02 3.60 16 21 N -0.32 -7.90 12.50 -56.24 -0.70 -8.60 16 22 N -0.33 -5.96 3.90 -325.72 -1.27 -7.23 16 23 C 0.04 0.43 7.12 44.99 0.32 0.75 16 24 C -0.14 -0.46 9.97 30.59 0.31 -0.16 16 25 C -0.17 -1.10 10.46 30.59 0.32 -0.78 16 26 C 0.16 2.84 10.62 84.30 0.90 3.74 16 27 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 31 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 32 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.12 3.25 7.39 -2.39 -0.02 3.23 16 36 H 0.12 3.24 7.18 -2.39 -0.02 3.22 16 37 H 0.20 5.12 8.06 -2.91 -0.02 5.10 16 38 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 0.30 6.98 -2.38 -0.02 0.28 16 40 H 0.15 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.22 2.41 7.20 -2.91 -0.02 2.39 16 Total: -1.00 -82.72 376.94 6.12 -76.60 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.03 Total: 9.47 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.69 Total: 25.29 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.72 Total: -99.47 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: 0.10 Total: -59.29 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -82.72 6.12 -76.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859890304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.287 kcal (2) G-P(sol) polarization free energy of solvation -82.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds