Wall clock time and date at job start Tue Mar 31 2020 13:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35817 * 126.05057 * 2 1 4 4 C 1.35758 * 107.56210 * 179.97438 * 3 2 1 5 5 N 1.40760 * 126.07966 * 179.97438 * 4 3 2 6 6 C 1.46769 * 124.34729 * 180.02562 * 5 4 3 7 7 C 1.54484 * 105.47124 * 162.96527 * 6 5 4 8 8 H 1.09000 * 111.00308 * 267.28824 * 7 6 5 9 9 C 1.50696 * 110.97076 * 143.53280 * 7 6 5 10 10 O 1.20833 * 119.99595 * 6.17172 * 9 7 6 11 11 O 1.34224 * 120.00302 * 186.16643 * 9 7 6 12 12 C 1.45206 * 117.00077 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46921 * 60.00420 * 19 17 15 21 21 H 1.48506 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47056 * 300.00305 * 19 17 15 23 23 C 1.54632 * 101.76492 * 25.41737 * 7 6 5 24 24 C 1.34423 * 124.34967 * 0.02773 * 5 4 3 25 25 O 1.21302 * 124.94315 * 0.46364 * 24 5 4 26 26 C 1.40256 * 107.84034 * 0.26099 * 4 3 2 27 27 N 1.30830 * 108.33282 * 359.55442 * 26 4 3 28 28 H 1.09002 * 109.46939 * 90.00314 * 1 2 3 29 29 H 1.08997 * 109.47022 * 209.99861 * 1 2 3 30 30 H 1.09003 * 109.47186 * 330.00214 * 1 2 3 31 31 H 1.08001 * 126.22014 * 359.97300 * 3 2 1 32 32 H 1.08997 * 110.24422 * 43.97067 * 6 5 4 33 33 H 1.08999 * 110.24510 * 281.96173 * 6 5 4 34 34 H 1.09000 * 109.47070 * 300.00162 * 12 11 9 35 35 H 1.09001 * 109.46626 * 60.00180 * 12 11 9 36 36 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 37 37 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 38 38 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 39 39 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 40 40 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.48581 * 93.88123 * 23 7 6 42 42 H 1.09001 * 110.49018 * 216.39314 * 23 7 6 43 43 H 1.07997 * 125.83374 * 179.73800 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0981 0.0000 4 6 3.5518 0.6676 0.0006 5 7 4.6987 1.4836 0.0003 6 6 6.0759 0.9763 0.0004 7 6 6.9546 2.1695 -0.4362 8 1 7.1132 2.1640 -1.5146 9 6 8.2698 2.1685 0.2996 10 8 8.5566 1.2440 1.0228 11 8 9.1225 3.1944 0.1514 12 6 10.3708 3.1260 0.8901 13 6 11.2061 4.3737 0.5964 14 6 12.5217 4.3014 1.3742 15 6 13.3443 5.5306 1.0855 16 1 12.9663 6.2880 0.4146 17 6 14.5788 5.6889 1.6785 18 7 15.0389 4.7669 2.4959 19 14 15.5988 7.2123 1.3201 20 1 14.8440 8.4222 1.7345 21 1 16.8756 7.1421 2.0752 22 1 15.8878 7.2834 -0.1347 23 6 6.0838 3.3746 -0.0112 24 6 4.6733 2.8276 -0.0001 25 8 3.6661 3.5035 0.0078 26 6 3.5359 -0.7349 -0.0051 27 7 2.2895 -1.1324 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9354 2.1268 -0.0004 32 1 6.1754 0.1551 -0.7094 33 1 6.3566 0.6474 1.0009 34 1 10.1586 3.0733 1.9580 35 1 10.9249 2.2382 0.5855 36 1 11.4183 4.4259 -0.4715 37 1 10.6522 5.2618 0.9007 38 1 12.3099 4.2490 2.4422 39 1 13.0755 3.4134 1.0697 40 1 15.9075 4.8781 2.9128 41 1 6.3673 3.7181 0.9837 42 1 6.1752 4.1852 -0.7341 43 1 4.4043 -1.3770 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859899942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:43 Heat of formation + Delta-G solvation = -43.723098 kcal Electronic energy + Delta-G solvation = -25715.421163 eV Core-core repulsion = 21762.609072 eV Total energy + Delta-G solvation = -3952.812091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92795 -40.93073 -39.86661 -37.11506 -36.36623 -34.19797 -33.96635 -32.77602 -31.71716 -29.65155 -28.33860 -27.27249 -26.84864 -24.62937 -23.01237 -22.43222 -21.27332 -20.53165 -20.17585 -19.75807 -18.19541 -17.84808 -17.03449 -16.66844 -16.27390 -16.21722 -15.84739 -15.44499 -15.19224 -14.82798 -14.50409 -14.46735 -14.12880 -13.88895 -13.60162 -13.39537 -13.19830 -13.04634 -12.87774 -12.28901 -12.22937 -12.10052 -11.92297 -11.72497 -11.29197 -10.99019 -10.79359 -10.70425 -10.63488 -10.57481 -10.48201 -10.17604 -9.82547 -9.78724 -9.55082 -9.21516 -8.41341 -8.03353 -6.06325 -4.09699 1.39715 1.87643 1.89980 2.06629 2.43752 2.70782 2.77027 3.30745 3.35358 3.37675 3.72811 3.83492 4.17128 4.35359 4.39239 4.44850 4.56231 4.70076 4.72687 4.83141 4.97216 4.99522 5.11508 5.16444 5.25597 5.29652 5.38472 5.42721 5.49273 5.52024 5.72301 5.92825 6.33397 6.36795 6.47404 6.53749 6.66744 6.73396 6.92202 7.23784 7.55840 7.66478 7.68432 7.72768 7.91432 8.32141 8.96284 9.54873 11.04947 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.040836 B = 0.001820 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.511719 B =15382.519219 C =15871.204193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.374 5.374 3 C 0.041 3.959 4 C 0.007 3.993 5 N -0.534 5.534 6 C 0.115 3.885 7 C -0.097 4.097 8 H 0.134 0.866 9 C 0.470 3.530 10 O -0.503 6.503 11 O -0.351 6.351 12 C 0.068 3.932 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.138 4.138 24 C 0.519 3.481 25 O -0.520 6.520 26 C 0.040 3.960 27 N -0.280 5.280 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.190 0.810 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.175 -9.749 -7.060 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.160 5.160 3 C -0.106 4.106 4 C -0.095 4.095 5 N -0.261 5.261 6 C -0.007 4.007 7 C -0.116 4.116 8 H 0.152 0.848 9 C 0.312 3.688 10 O -0.392 6.392 11 O -0.267 6.267 12 C -0.005 4.005 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.178 4.178 24 C 0.307 3.693 25 O -0.396 6.396 26 C -0.148 4.148 27 N -0.102 5.102 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.207 0.793 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -28.391 -10.701 -6.699 31.072 hybrid contribution 1.423 1.352 -0.042 1.963 sum -26.969 -9.349 -6.741 29.329 Atomic orbital electron populations 1.21874 0.73370 1.04684 1.03548 1.48358 1.06664 1.03227 1.57729 1.22476 0.89480 0.94009 1.04673 1.17511 0.85841 0.90169 1.15956 1.45165 1.04711 1.05792 1.70430 1.22112 0.78043 0.95735 1.04827 1.21865 0.90258 0.96668 1.02843 0.84841 1.22817 0.85669 0.80564 0.79750 1.90697 1.76212 1.35733 1.36518 1.86494 1.30341 1.44035 1.65821 1.23594 0.79834 1.01754 0.95307 1.21782 0.97068 0.93926 1.01939 1.19052 0.89324 0.97759 0.95180 1.21128 1.02187 1.05206 1.27658 0.92451 1.25025 0.97760 0.96588 0.95029 1.69951 1.19320 1.33973 1.30053 0.86602 0.79414 0.83250 0.78415 1.20174 1.21257 1.20180 1.22289 0.90807 0.98151 1.06521 1.20857 0.91542 0.81352 0.75530 1.90680 1.36958 1.62087 1.49862 1.23693 0.95881 0.92551 1.02642 1.77311 1.00806 1.08714 1.23351 0.90583 0.89114 0.89243 0.79329 0.88543 0.88192 0.91292 0.91260 0.92048 0.92040 0.96220 0.96209 0.92813 0.86565 0.85849 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.48 11.48 59.85 0.69 1.16 16 2 N -0.37 -3.34 4.04 -67.82 -0.27 -3.61 16 3 C 0.04 0.40 10.69 -16.68 -0.18 0.22 16 4 C 0.01 0.08 6.80 -83.88 -0.57 -0.49 16 5 N -0.53 -5.07 3.16 -112.47 -0.36 -5.43 16 6 C 0.12 0.89 6.24 -3.12 -0.02 0.87 16 7 C -0.10 -0.78 3.66 -90.14 -0.33 -1.11 16 8 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.47 5.70 7.18 36.00 0.26 5.95 16 10 O -0.50 -7.42 15.32 -18.76 -0.29 -7.70 16 11 O -0.35 -4.96 10.21 -39.24 -0.40 -5.36 16 12 C 0.07 1.13 5.47 37.16 0.20 1.33 16 13 C -0.11 -2.13 5.53 -26.73 -0.15 -2.28 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.14 -1.14 6.40 -26.74 -0.17 -1.31 16 24 C 0.52 5.45 7.98 -10.86 -0.09 5.36 16 25 O -0.52 -6.87 15.64 5.54 0.09 -6.78 16 26 C 0.04 0.37 11.53 -17.22 -0.20 0.17 16 27 N -0.28 -2.91 12.56 30.70 0.39 -2.53 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.19 1.81 6.51 -52.49 -0.34 1.47 16 32 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.10 0.88 7.06 -51.93 -0.37 0.51 16 34 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 0.98 7.89 -51.93 -0.41 0.57 16 42 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -34.65 370.81 -6.80 -41.45 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.15 Total: -3.38 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.10 Total: -2.84 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.49 Total: -37.15 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.60 Total: -19.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.65 -6.80 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859899942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.274 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds