Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35817 * 126.05057 * 2 1 4 4 C 1.35758 * 107.56210 * 179.97438 * 3 2 1 5 5 N 1.40760 * 126.07966 * 179.97438 * 4 3 2 6 6 C 1.46769 * 124.34729 * 180.02562 * 5 4 3 7 7 C 1.54484 * 105.47124 * 162.96527 * 6 5 4 8 8 H 1.09000 * 111.00308 * 267.28824 * 7 6 5 9 9 C 1.50696 * 110.97076 * 143.53280 * 7 6 5 10 10 O 1.20833 * 119.99595 * 6.17172 * 9 7 6 11 11 O 1.34224 * 120.00302 * 186.16643 * 9 7 6 12 12 C 1.45206 * 117.00077 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46921 * 60.00420 * 19 17 15 21 21 H 1.48506 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47056 * 300.00305 * 19 17 15 23 23 C 1.54632 * 101.76492 * 25.41737 * 7 6 5 24 24 C 1.34423 * 124.34967 * 0.02773 * 5 4 3 25 25 O 1.21302 * 124.94315 * 0.46364 * 24 5 4 26 26 C 1.40256 * 107.84034 * 0.26099 * 4 3 2 27 27 N 1.30830 * 108.33282 * 359.55442 * 26 4 3 28 28 H 1.09002 * 109.46939 * 90.00314 * 1 2 3 29 29 H 1.08997 * 109.47022 * 209.99861 * 1 2 3 30 30 H 1.09003 * 109.47186 * 330.00214 * 1 2 3 31 31 H 1.08001 * 126.22014 * 359.97300 * 3 2 1 32 32 H 1.08997 * 110.24422 * 43.97067 * 6 5 4 33 33 H 1.08999 * 110.24510 * 281.96173 * 6 5 4 34 34 H 1.09000 * 109.47070 * 300.00162 * 12 11 9 35 35 H 1.09001 * 109.46626 * 60.00180 * 12 11 9 36 36 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 37 37 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 38 38 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 39 39 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 40 40 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.48581 * 93.88123 * 23 7 6 42 42 H 1.09001 * 110.49018 * 216.39314 * 23 7 6 43 43 H 1.07997 * 125.83374 * 179.73800 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0981 0.0000 4 6 3.5518 0.6676 0.0006 5 7 4.6987 1.4836 0.0003 6 6 6.0759 0.9763 0.0004 7 6 6.9546 2.1695 -0.4362 8 1 7.1132 2.1640 -1.5146 9 6 8.2698 2.1685 0.2996 10 8 8.5566 1.2440 1.0228 11 8 9.1225 3.1944 0.1514 12 6 10.3708 3.1260 0.8901 13 6 11.2061 4.3737 0.5964 14 6 12.5217 4.3014 1.3742 15 6 13.3443 5.5306 1.0855 16 1 12.9663 6.2880 0.4146 17 6 14.5788 5.6889 1.6785 18 7 15.0389 4.7669 2.4959 19 14 15.5988 7.2123 1.3201 20 1 14.8440 8.4222 1.7345 21 1 16.8756 7.1421 2.0752 22 1 15.8878 7.2834 -0.1347 23 6 6.0838 3.3746 -0.0112 24 6 4.6733 2.8276 -0.0001 25 8 3.6661 3.5035 0.0078 26 6 3.5359 -0.7349 -0.0051 27 7 2.2895 -1.1324 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9354 2.1268 -0.0004 32 1 6.1754 0.1551 -0.7094 33 1 6.3566 0.6474 1.0009 34 1 10.1586 3.0733 1.9580 35 1 10.9249 2.2382 0.5855 36 1 11.4183 4.4259 -0.4715 37 1 10.6522 5.2618 0.9007 38 1 12.3099 4.2490 2.4422 39 1 13.0755 3.4134 1.0697 40 1 15.9075 4.8781 2.9128 41 1 6.3673 3.7181 0.9837 42 1 6.1752 4.1852 -0.7341 43 1 4.4043 -1.3770 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859899942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = -64.833722 kcal Electronic energy + Delta-G solvation = -25716.336588 eV Core-core repulsion = 21762.609072 eV Total energy + Delta-G solvation = -3953.727516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65274 -41.80518 -40.78085 -38.12799 -37.36487 -35.90793 -34.76123 -33.69732 -33.33154 -30.37426 -29.19070 -28.81191 -27.45463 -25.85027 -24.47108 -23.12652 -22.12705 -22.05126 -21.13074 -20.50382 -19.05091 -18.66799 -18.53150 -17.86020 -17.49633 -17.18524 -16.56493 -16.47685 -16.23593 -15.98580 -15.70108 -15.46834 -14.86399 -14.74647 -14.48806 -14.46002 -14.01033 -13.96002 -13.73612 -13.66335 -13.56377 -13.37966 -12.79389 -12.71129 -12.58939 -12.50960 -12.28816 -12.03064 -11.99278 -11.78877 -11.42387 -11.36981 -11.31780 -11.22652 -10.99363 -10.53907 -10.48486 -8.74894 -8.19328 -6.30457 0.68571 1.07951 1.14394 1.25021 1.43604 1.46298 1.53378 1.56691 1.97541 2.01350 2.43358 3.00337 3.14532 3.14778 3.56597 3.61166 3.76346 3.88261 4.04294 4.07803 4.11170 4.20964 4.37480 4.42597 4.46647 4.48195 4.56053 4.64276 4.68021 4.76162 4.80764 4.85910 4.93095 5.07602 5.13087 5.44427 5.55715 5.67428 5.68652 5.83789 5.85921 5.99342 6.22238 6.55548 6.64503 6.85854 6.94387 7.39086 8.92333 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.040836 B = 0.001820 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.511719 B =15382.519219 C =15871.204193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.375 5.375 3 C 0.034 3.966 4 C -0.012 4.012 5 N -0.531 5.531 6 C 0.115 3.885 7 C -0.081 4.081 8 H 0.168 0.832 9 C 0.473 3.527 10 O -0.530 6.530 11 O -0.349 6.349 12 C 0.078 3.922 13 C -0.095 4.095 14 C 0.024 3.976 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.132 4.132 24 C 0.513 3.487 25 O -0.554 6.554 26 C 0.041 3.959 27 N -0.306 5.306 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.067 0.933 38 H -0.004 1.004 39 H -0.002 1.002 40 H 0.264 0.736 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 -9.270 -8.489 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.160 5.160 3 C -0.114 4.114 4 C -0.115 4.115 5 N -0.256 5.256 6 C -0.006 4.006 7 C -0.100 4.100 8 H 0.185 0.815 9 C 0.317 3.683 10 O -0.419 6.419 11 O -0.265 6.265 12 C 0.005 3.995 13 C -0.133 4.133 14 C -0.013 4.013 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.172 4.172 24 C 0.303 3.697 25 O -0.432 6.432 26 C -0.146 4.146 27 N -0.128 5.128 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.205 0.795 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.159 0.841 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -29.162 -10.245 -8.142 31.963 hybrid contribution 1.550 1.136 0.428 1.968 sum -27.612 -9.109 -7.714 30.082 Atomic orbital electron populations 1.22223 0.71259 1.06018 1.04880 1.48725 1.07907 1.02527 1.56829 1.22576 0.89950 0.94260 1.04640 1.17755 0.86130 0.90735 1.16833 1.45231 1.05184 1.05555 1.69670 1.22216 0.77003 0.96280 1.05137 1.21917 0.87503 0.96628 1.03993 0.81478 1.23536 0.86191 0.79380 0.79224 1.90701 1.76863 1.36604 1.37739 1.86473 1.29557 1.45057 1.65417 1.23153 0.80945 1.00114 0.95303 1.21456 0.94964 0.95546 1.01308 1.18945 0.91757 0.96087 0.94510 1.21623 1.02806 1.06156 1.27592 0.91639 1.25977 0.99210 0.99860 0.94773 1.70088 1.19828 1.36118 1.31237 0.85482 0.77534 0.79284 0.78637 1.19154 1.21095 1.19064 1.22300 0.89261 0.98616 1.07029 1.21205 0.91915 0.81577 0.75052 1.90660 1.38135 1.62848 1.51550 1.24062 0.96313 0.92486 1.01761 1.77264 1.01544 1.09683 1.24300 0.89226 0.88349 0.87407 0.79514 0.85888 0.89210 0.91790 0.91526 0.91314 0.91445 0.98531 0.98396 0.92768 0.86806 0.84052 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 11.48 127.77 1.47 2.21 16 2 N -0.37 -6.37 4.04 -368.47 -1.49 -7.86 16 3 C 0.03 0.64 10.69 83.50 0.89 1.54 16 4 C -0.01 -0.23 6.80 37.62 0.26 0.02 16 5 N -0.53 -9.30 3.16 -628.34 -1.99 -11.28 16 6 C 0.12 1.53 6.24 86.83 0.54 2.08 16 7 C -0.08 -1.08 3.66 -10.48 -0.04 -1.12 16 8 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 9 C 0.47 10.55 7.18 71.23 0.51 11.07 16 10 O -0.53 -14.99 15.32 21.94 0.34 -14.66 16 11 O -0.35 -9.22 10.21 -51.35 -0.52 -9.74 16 12 C 0.08 2.56 5.47 71.98 0.39 2.96 16 13 C -0.10 -3.64 5.53 30.60 0.17 -3.47 16 14 C 0.02 1.22 4.97 29.85 0.15 1.37 16 15 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 16 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 19 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 C -0.13 -1.91 6.40 30.59 0.20 -1.72 16 24 C 0.51 10.17 7.98 87.90 0.70 10.87 16 25 O -0.55 -14.41 15.64 -3.10 -0.05 -14.46 16 26 C 0.04 0.70 11.53 85.33 0.98 1.69 16 27 N -0.31 -6.08 12.56 -56.77 -0.71 -6.79 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.19 3.60 6.51 -2.91 -0.02 3.58 16 32 H 0.12 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.09 1.44 7.06 -2.39 -0.02 1.42 16 34 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 35 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.11 1.75 7.89 -2.39 -0.02 1.73 16 42 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.31 370.81 5.82 -69.49 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.02 Total: 7.32 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 6.92 Total: -1.76 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.90 Total: -81.40 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.24 Total: -38.86 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.31 5.82 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859899942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.653 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds