Wall clock time and date at job start Tue Mar 31 2020 13:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00023 * 2 1 4 4 C 1.50700 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.38344 * 119.86686 * 0.23986 * 4 3 2 6 6 C 1.37944 * 120.16956 * 180.27613 * 5 4 3 7 7 C 1.39596 * 119.90956 * 359.74172 * 6 5 4 8 8 C 1.47848 * 120.13573 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99922 * 150.60824 * 8 7 6 10 10 N 1.34774 * 120.00134 * 330.61702 * 8 7 6 11 11 C 1.46509 * 119.99906 * 6.30309 * 10 8 7 12 12 C 1.50694 * 109.46854 * 98.69005 * 11 10 8 13 13 H 1.07995 * 120.00491 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99800 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47726 * 119.99644 * 16 14 12 19 19 H 1.48506 * 109.47000 * 239.99584 * 16 14 12 20 20 C 1.46502 * 120.00167 * 186.30736 * 10 8 7 21 21 C 1.53001 * 109.46943 * 94.54513 * 20 10 8 22 22 C 1.52998 * 117.50030 * 243.49904 * 21 20 10 23 23 C 1.52998 * 117.49835 * 174.83645 * 21 20 10 24 24 C 1.39531 * 119.73118 * 0.02562 * 7 6 5 25 25 C 1.38212 * 119.82749 * 359.97438 * 24 7 6 26 26 F 1.35095 * 119.95304 * 179.97438 * 25 24 7 27 27 H 1.08998 * 109.47323 * 299.99661 * 1 2 3 28 28 H 1.09007 * 109.47152 * 59.99746 * 1 2 3 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46947 * 60.00111 * 3 2 1 31 31 H 1.08997 * 109.47069 * 300.00544 * 3 2 1 32 32 H 1.07996 * 119.91663 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.04745 * 179.71884 * 6 5 4 34 34 H 1.08998 * 109.46715 * 218.68875 * 11 10 8 35 35 H 1.09001 * 109.47295 * 338.68672 * 11 10 8 36 36 H 0.97005 * 119.99737 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46934 * 214.54068 * 20 10 8 38 38 H 1.08995 * 109.46744 * 334.54482 * 20 10 8 39 39 H 1.09005 * 115.55050 * 29.17312 * 21 20 10 40 40 H 1.09003 * 117.49609 * 359.97438 * 22 21 20 41 41 H 1.08997 * 117.50017 * 145.02373 * 22 21 20 42 42 H 1.09000 * 117.50189 * 214.97917 * 23 21 20 43 43 H 1.09001 * 117.49836 * 0.02562 * 23 21 20 44 44 H 1.08000 * 120.08548 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1045 -0.0639 -0.0061 6 6 5.4790 -0.1801 -0.0010 7 6 6.2746 0.9669 0.0043 8 6 7.7483 0.8481 0.0104 9 8 8.4300 1.7144 -0.5019 10 7 8.3359 -0.2207 0.5838 11 6 7.5161 -1.3300 1.0777 12 6 7.5014 -2.4374 0.0558 13 1 8.0481 -2.3264 -0.8688 14 6 6.7897 -3.5926 0.3013 15 7 6.1242 -3.7281 1.4276 16 14 6.7719 -4.9656 -0.9650 17 1 7.5934 -4.5690 -2.1368 18 1 7.3323 -6.2019 -0.3628 19 1 5.3753 -5.2174 -1.4026 20 6 9.7942 -0.2733 0.7133 21 6 10.2026 0.2454 2.0935 22 6 11.0537 1.5156 2.1475 23 6 11.6826 0.1582 2.4714 24 6 5.6734 2.2260 0.0049 25 6 4.2951 2.3297 -0.0002 26 9 3.7103 3.5475 0.0009 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.4890 -0.9513 -0.0095 33 1 5.9391 -1.1573 -0.0007 34 1 7.9352 -1.7034 2.0121 35 1 6.4980 -0.9809 1.2500 36 1 5.6238 -4.5409 1.6005 37 1 10.1323 -1.3030 0.5974 38 1 10.2499 0.3479 -0.0578 39 1 9.4709 0.0957 2.8875 40 1 11.3230 1.9816 1.1996 41 1 10.8822 2.2015 2.9771 42 1 11.9246 -0.0484 3.5140 43 1 12.3654 -0.2683 1.7365 44 1 6.2833 3.1173 0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865164637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:43 Heat of formation + Delta-G solvation = -51.405043 kcal Electronic energy + Delta-G solvation = -27374.655157 eV Core-core repulsion = 23401.589990 eV Total energy + Delta-G solvation = -3973.065167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.66605 -39.93922 -38.47736 -37.38114 -36.70179 -35.05496 -32.65551 -31.93022 -30.26911 -28.10093 -27.53575 -26.45990 -25.24796 -23.22387 -22.32414 -22.12398 -21.71495 -20.40347 -19.10624 -17.26912 -16.77776 -16.66969 -16.27521 -16.07160 -15.81200 -15.42050 -15.21654 -15.12526 -14.63867 -14.50664 -14.39419 -14.02258 -13.51133 -13.35211 -12.92629 -12.74232 -12.72428 -12.44440 -12.20475 -11.86548 -11.60212 -11.39881 -11.30975 -11.26223 -11.05018 -10.98432 -10.91726 -10.37184 -10.17105 -9.92702 -9.86755 -9.74736 -9.58283 -9.14720 -8.74640 -8.55998 -8.07707 -7.80096 -6.32694 -4.42594 1.18995 1.62525 3.16023 3.25594 3.28455 3.33945 3.62715 3.70448 4.13205 4.14957 4.26236 4.58139 4.82531 4.98099 5.06709 5.14821 5.19607 5.20986 5.23644 5.25411 5.32761 5.40583 5.41589 5.57735 5.71482 5.78148 5.79169 5.84502 6.07855 6.13054 6.20098 6.23991 6.34954 6.39472 6.55276 6.56415 6.70554 6.79351 6.92748 7.11408 7.14945 7.34096 7.45299 7.62768 7.87564 8.24414 8.66154 8.90105 9.26059 10.71664 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.005184 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.199223 B = 5399.972308 C = 7928.031330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.108 3.892 4 C -0.111 4.111 5 C -0.082 4.082 6 C -0.103 4.103 7 C -0.106 4.106 8 C 0.559 3.441 9 O -0.565 6.565 10 N -0.583 5.583 11 C 0.204 3.796 12 C -0.546 4.546 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.878 5.878 16 Si 0.896 3.104 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.149 3.851 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.102 4.102 25 C 0.072 3.928 26 F -0.145 7.145 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.211 0.789 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 6.876 0.656 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.031 3.969 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.348 3.652 9 O -0.447 6.447 10 N -0.312 5.312 11 C 0.085 3.915 12 C -0.584 4.584 13 H 0.085 0.915 14 C -0.135 4.135 15 N -0.515 5.515 16 Si 0.723 3.277 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.205 1.205 20 C 0.026 3.974 21 C -0.179 4.179 22 C -0.215 4.215 23 C -0.216 4.216 24 C -0.122 4.122 25 C 0.053 3.947 26 F -0.124 7.124 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.227 0.773 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.211 7.041 0.516 8.221 hybrid contribution -0.472 -0.376 -0.425 0.738 sum -4.683 6.665 0.091 8.147 Atomic orbital electron populations 1.22748 0.80876 1.02971 0.99849 1.87916 1.19649 1.26930 1.95427 1.21089 0.89827 0.85150 1.00800 1.19831 0.94291 0.93282 1.03857 1.20981 0.94840 0.96393 0.97826 1.23660 0.93688 1.02979 0.91682 1.19823 0.93936 0.93212 1.03934 1.18143 0.87039 0.81676 0.78360 1.90670 1.65107 1.41816 1.47090 1.47993 1.06735 1.19110 1.57318 1.20401 0.92389 0.83272 0.95485 1.21482 1.32078 1.00511 1.04378 0.91497 1.24992 0.94734 0.98192 0.95629 1.69937 1.30422 1.27868 1.23265 0.86453 0.78266 0.81575 0.81421 1.19455 1.20688 1.20483 1.20882 0.80924 1.01709 0.93931 1.22779 0.93683 1.01525 0.99961 1.22998 1.04770 0.90867 1.02900 1.22906 0.95880 1.00962 1.01857 1.20979 0.92169 0.98456 1.00552 1.17048 0.90727 0.79171 1.07743 1.91439 1.84542 1.41925 1.94481 0.94051 0.94115 0.89358 0.91822 0.91868 0.83786 0.77339 0.94652 0.91299 0.92137 0.89709 0.90384 0.87751 0.88745 0.89479 0.89130 0.88876 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.36 9.17 -35.23 -0.32 -5.68 16 3 C 0.11 1.46 5.90 36.01 0.21 1.67 16 4 C -0.11 -1.84 5.89 -104.47 -0.62 -2.45 16 5 C -0.08 -1.50 9.36 -39.65 -0.37 -1.88 16 6 C -0.10 -2.08 7.50 -39.18 -0.29 -2.37 16 7 C -0.11 -2.13 5.59 -104.98 -0.59 -2.71 16 8 C 0.56 12.02 7.47 -12.33 -0.09 11.93 16 9 O -0.57 -12.97 16.19 5.32 0.09 -12.89 16 10 N -0.58 -12.17 2.47 -176.17 -0.43 -12.61 16 11 C 0.20 4.60 4.67 -5.19 -0.02 4.58 16 12 C -0.55 -13.25 7.53 -34.44 -0.26 -13.51 16 13 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.71 5.33 -17.82 -0.10 1.62 16 15 N -0.88 -22.37 13.29 55.43 0.74 -21.64 16 16 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.15 2.75 5.78 -4.04 -0.02 2.72 16 21 C -0.16 -2.60 6.01 -90.62 -0.54 -3.14 16 22 C -0.18 -2.55 10.18 -26.69 -0.27 -2.82 16 23 C -0.18 -2.37 10.25 -26.69 -0.27 -2.64 16 24 C -0.10 -1.84 9.58 -39.11 -0.37 -2.22 16 25 C 0.07 1.21 7.24 -39.48 -0.29 0.93 16 26 F -0.15 -2.27 16.79 2.25 0.04 -2.23 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.14 2.61 6.99 -52.49 -0.37 2.24 16 33 H 0.21 4.70 3.03 -52.48 -0.16 4.54 16 34 H 0.04 0.84 8.13 -51.93 -0.42 0.42 16 35 H 0.07 1.60 3.99 -52.27 -0.21 1.39 16 36 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 37 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 38 H 0.08 1.46 6.95 -51.93 -0.36 1.09 16 39 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 40 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.14 2.39 7.92 -52.49 -0.42 1.98 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -26.91 370.58 -8.24 -35.15 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.12 Total: 8.76 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.79 Total: -8.87 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.30 Total: -34.24 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.24 Total: -18.57 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.91 -8.24 -35.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.255 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds