Wall clock time and date at job start Tue Mar 31 2020 13:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00023 * 2 1 4 4 C 1.50700 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.38344 * 119.86686 * 0.23986 * 4 3 2 6 6 C 1.37944 * 120.16956 * 180.27613 * 5 4 3 7 7 C 1.39596 * 119.90956 * 359.74172 * 6 5 4 8 8 C 1.47848 * 120.13573 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99922 * 150.60824 * 8 7 6 10 10 N 1.34774 * 120.00134 * 330.61702 * 8 7 6 11 11 C 1.46509 * 119.99906 * 6.30309 * 10 8 7 12 12 C 1.50694 * 109.46854 * 98.69005 * 11 10 8 13 13 H 1.07995 * 120.00491 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99800 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47726 * 119.99644 * 16 14 12 19 19 H 1.48506 * 109.47000 * 239.99584 * 16 14 12 20 20 C 1.46502 * 120.00167 * 186.30736 * 10 8 7 21 21 C 1.53001 * 109.46943 * 94.54513 * 20 10 8 22 22 C 1.52998 * 117.50030 * 243.49904 * 21 20 10 23 23 C 1.52998 * 117.49835 * 174.83645 * 21 20 10 24 24 C 1.39531 * 119.73118 * 0.02562 * 7 6 5 25 25 C 1.38212 * 119.82749 * 359.97438 * 24 7 6 26 26 F 1.35095 * 119.95304 * 179.97438 * 25 24 7 27 27 H 1.08998 * 109.47323 * 299.99661 * 1 2 3 28 28 H 1.09007 * 109.47152 * 59.99746 * 1 2 3 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46947 * 60.00111 * 3 2 1 31 31 H 1.08997 * 109.47069 * 300.00544 * 3 2 1 32 32 H 1.07996 * 119.91663 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.04745 * 179.71884 * 6 5 4 34 34 H 1.08998 * 109.46715 * 218.68875 * 11 10 8 35 35 H 1.09001 * 109.47295 * 338.68672 * 11 10 8 36 36 H 0.97005 * 119.99737 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46934 * 214.54068 * 20 10 8 38 38 H 1.08995 * 109.46744 * 334.54482 * 20 10 8 39 39 H 1.09005 * 115.55050 * 29.17312 * 21 20 10 40 40 H 1.09003 * 117.49609 * 359.97438 * 22 21 20 41 41 H 1.08997 * 117.50017 * 145.02373 * 22 21 20 42 42 H 1.09000 * 117.50189 * 214.97917 * 23 21 20 43 43 H 1.09001 * 117.49836 * 0.02562 * 23 21 20 44 44 H 1.08000 * 120.08548 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1045 -0.0639 -0.0061 6 6 5.4790 -0.1801 -0.0010 7 6 6.2746 0.9669 0.0043 8 6 7.7483 0.8481 0.0104 9 8 8.4300 1.7144 -0.5019 10 7 8.3359 -0.2207 0.5838 11 6 7.5161 -1.3300 1.0777 12 6 7.5014 -2.4374 0.0558 13 1 8.0481 -2.3264 -0.8688 14 6 6.7897 -3.5926 0.3013 15 7 6.1242 -3.7281 1.4276 16 14 6.7719 -4.9656 -0.9650 17 1 7.5934 -4.5690 -2.1368 18 1 7.3323 -6.2019 -0.3628 19 1 5.3753 -5.2174 -1.4026 20 6 9.7942 -0.2733 0.7133 21 6 10.2026 0.2454 2.0935 22 6 11.0537 1.5156 2.1475 23 6 11.6826 0.1582 2.4714 24 6 5.6734 2.2260 0.0049 25 6 4.2951 2.3297 -0.0002 26 9 3.7103 3.5475 0.0009 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.4890 -0.9513 -0.0095 33 1 5.9391 -1.1573 -0.0007 34 1 7.9352 -1.7034 2.0121 35 1 6.4980 -0.9809 1.2500 36 1 5.6238 -4.5409 1.6005 37 1 10.1323 -1.3030 0.5974 38 1 10.2499 0.3479 -0.0578 39 1 9.4709 0.0957 2.8875 40 1 11.3230 1.9816 1.1996 41 1 10.8822 2.2015 2.9771 42 1 11.9246 -0.0484 3.5140 43 1 12.3654 -0.2683 1.7365 44 1 6.2833 3.1173 0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865164637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:42 Heat of formation + Delta-G solvation = -63.633733 kcal Electronic energy + Delta-G solvation = -27375.185433 eV Core-core repulsion = 23401.589990 eV Total energy + Delta-G solvation = -3973.595442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.98556 -41.52629 -39.77947 -38.54232 -38.08216 -36.72576 -34.49691 -33.27427 -31.75202 -29.66993 -28.99437 -27.64522 -26.43280 -25.04163 -23.72833 -23.28616 -23.08220 -21.76718 -20.65453 -18.83135 -18.53249 -18.05708 -17.62028 -17.19217 -17.14850 -16.84587 -16.52635 -16.39579 -16.22290 -15.99599 -15.87132 -15.28118 -14.89120 -14.84866 -14.37926 -14.27959 -14.04229 -13.86380 -13.60007 -13.34244 -13.03420 -12.86860 -12.73612 -12.55379 -12.40825 -12.34357 -12.28227 -12.11152 -11.73914 -11.48949 -11.34146 -10.90855 -10.82142 -10.80308 -10.57878 -9.98851 -9.57290 -9.48648 -8.22627 -6.38197 -0.27874 0.17071 1.42065 1.46890 1.55899 1.72687 2.13148 2.40760 2.64324 2.65400 2.92313 3.06324 3.17902 3.51588 3.78750 3.82236 3.87026 4.01565 4.12906 4.14752 4.25896 4.35195 4.37545 4.39484 4.53763 4.60434 4.64105 4.76447 4.78690 4.82295 4.87393 4.89215 4.95272 5.00923 5.11952 5.22719 5.26088 5.28182 5.37085 5.41036 5.64546 5.77370 5.85728 5.99245 6.18701 6.49630 6.76337 7.18326 7.34532 8.81552 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.005184 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.199223 B = 5399.972308 C = 7928.031330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.108 3.892 4 C -0.100 4.100 5 C -0.086 4.086 6 C -0.115 4.115 7 C -0.124 4.124 8 C 0.554 3.446 9 O -0.586 6.586 10 N -0.584 5.584 11 C 0.219 3.781 12 C -0.551 4.551 13 H 0.054 0.946 14 C 0.035 3.965 15 N -0.903 5.903 16 Si 0.950 3.050 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.275 1.275 20 C 0.148 3.852 21 C -0.185 4.185 22 C -0.173 4.173 23 C -0.154 4.154 24 C -0.101 4.101 25 C 0.083 3.917 26 F -0.133 7.133 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.187 0.813 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.272 0.728 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 7.539 0.645 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.032 3.968 4 C -0.101 4.101 5 C -0.104 4.104 6 C -0.133 4.133 7 C -0.127 4.127 8 C 0.344 3.656 9 O -0.469 6.469 10 N -0.312 5.312 11 C 0.099 3.901 12 C -0.589 4.589 13 H 0.073 0.927 14 C -0.168 4.168 15 N -0.540 5.540 16 Si 0.776 3.224 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.200 1.200 20 C 0.026 3.974 21 C -0.205 4.205 22 C -0.210 4.210 23 C -0.191 4.191 24 C -0.121 4.121 25 C 0.063 3.937 26 F -0.111 7.111 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.203 0.797 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.155 7.702 0.512 9.282 hybrid contribution -0.250 -0.527 -0.423 0.720 sum -5.405 7.175 0.089 8.983 Atomic orbital electron populations 1.22975 0.78718 1.04053 1.01311 1.87877 1.22030 1.27206 1.95705 1.21194 0.87469 0.85584 1.02597 1.20114 0.96373 0.92198 1.01424 1.20932 0.93893 0.97373 0.98198 1.23351 0.94686 1.01956 0.93265 1.19743 0.93087 0.94047 1.05831 1.18416 0.87790 0.81429 0.77986 1.90638 1.65747 1.42413 1.48099 1.48028 1.07674 1.18590 1.56935 1.20121 0.92366 0.83345 0.94286 1.21523 1.31953 1.01269 1.04121 0.92739 1.25556 0.94365 0.99840 0.97009 1.70005 1.31026 1.28494 1.24484 0.85617 0.78242 0.79240 0.79341 1.19761 1.20292 1.19989 1.20962 0.79579 1.01478 0.95426 1.22603 0.95488 1.04196 0.98175 1.23041 1.03725 0.91006 1.03225 1.23029 0.93347 0.99443 1.03264 1.21049 0.93029 0.97854 1.00144 1.16938 0.90168 0.79728 1.06827 1.91473 1.84211 1.41172 1.94282 0.92636 0.92546 0.88610 0.89912 0.89813 0.83909 0.79684 0.96476 0.91595 0.91906 0.90221 0.90836 0.89073 0.89174 0.88215 0.87212 0.87720 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.67 9.17 -148.98 -1.37 -12.04 16 3 C 0.11 2.62 5.90 71.24 0.42 3.04 16 4 C -0.10 -3.14 5.89 -19.76 -0.12 -3.25 16 5 C -0.09 -3.13 9.36 22.23 0.21 -2.93 16 6 C -0.12 -4.77 7.50 22.53 0.17 -4.60 16 7 C -0.12 -5.07 5.59 -20.09 -0.11 -5.19 16 8 C 0.55 24.55 7.47 86.79 0.65 25.20 16 9 O -0.59 -27.44 16.19 -3.88 -0.06 -27.51 16 10 N -0.58 -25.36 2.47 -829.56 -2.05 -27.41 16 11 C 0.22 10.30 4.67 85.63 0.40 10.70 16 12 C -0.55 -27.52 7.53 25.60 0.19 -27.33 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.04 1.76 5.33 84.66 0.45 2.21 16 15 N -0.90 -46.70 13.29 21.45 0.28 -46.41 16 16 Si 0.95 40.13 29.54 68.60 2.03 42.16 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C 0.15 5.63 5.78 86.38 0.50 6.13 16 21 C -0.19 -6.05 6.01 -10.79 -0.06 -6.11 16 22 C -0.17 -4.79 10.18 30.62 0.31 -4.48 16 23 C -0.15 -3.83 10.25 30.62 0.31 -3.52 16 24 C -0.10 -3.62 9.58 22.58 0.22 -3.40 16 25 C 0.08 2.64 7.24 22.34 0.16 2.80 16 26 F -0.13 -3.79 16.79 44.97 0.75 -3.03 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.14 5.21 6.99 -2.91 -0.02 5.19 16 33 H 0.19 8.67 3.03 -2.91 -0.01 8.66 16 34 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 35 H 0.07 3.20 3.99 -2.71 -0.01 3.19 16 36 H 0.27 13.30 8.31 -92.70 -0.77 12.53 16 37 H 0.08 3.03 8.11 -2.39 -0.02 3.01 16 38 H 0.07 2.82 6.95 -2.39 -0.02 2.81 16 39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.09 2.58 8.03 -2.39 -0.02 2.56 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.15 4.93 7.92 -2.91 -0.02 4.91 16 Total: -1.00 -57.86 370.58 5.55 -52.30 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 1.02 Total: 30.98 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.95 Total: -9.04 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.76 Total: -73.82 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.43 Total: -39.55 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.75 Total: -3.03 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -57.86 5.55 -52.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.331 kcal (2) G-P(sol) polarization free energy of solvation -57.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds