Wall clock time and date at job start Tue Mar 31 2020 13:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00060 * 2 1 4 4 C 1.50705 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.38360 * 119.85809 * 359.97438 * 4 3 2 6 6 C 1.37921 * 120.17934 * 180.30188 * 5 4 3 7 7 C 1.39660 * 119.89744 * 359.46931 * 6 5 4 8 8 C 1.47734 * 120.13942 * 180.23224 * 7 6 5 9 9 O 1.21586 * 120.00508 * 209.35349 * 8 7 6 10 10 N 1.34778 * 119.99861 * 29.35802 * 8 7 6 11 11 C 1.36876 * 119.99736 * 4.88291 * 10 8 7 12 12 H 1.08005 * 119.99737 * 231.05805 * 11 10 8 13 13 C 1.39051 * 120.00211 * 51.06313 * 11 10 8 14 14 N 1.31366 * 119.99700 * 12.41747 * 13 11 10 15 15 Si 1.86800 * 120.00140 * 192.41397 * 13 11 10 16 16 H 1.48494 * 109.46835 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46946 * 119.99818 * 15 13 11 18 18 H 1.48498 * 109.47177 * 239.99975 * 15 13 11 19 19 C 1.46502 * 120.00130 * 184.88540 * 10 8 7 20 20 C 1.54266 * 110.02906 * 233.83897 * 19 10 8 21 21 C 1.54964 * 104.15655 * 217.13571 * 20 19 10 22 22 C 1.54886 * 102.78178 * 37.88684 * 21 20 19 23 23 C 1.53869 * 110.03318 * 116.62015 * 19 10 8 24 24 C 1.39608 * 119.72428 * 0.52655 * 7 6 5 25 25 C 1.38191 * 119.81717 * 359.72810 * 24 7 6 26 26 F 1.35097 * 119.94830 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 299.99817 * 1 2 3 29 29 H 1.09001 * 109.47231 * 60.00136 * 1 2 3 30 30 H 1.08998 * 109.47551 * 60.00101 * 3 2 1 31 31 H 1.09000 * 109.47155 * 300.00101 * 3 2 1 32 32 H 1.08003 * 119.90731 * 0.02562 * 5 4 3 33 33 H 1.08004 * 120.04723 * 179.72850 * 6 5 4 34 34 H 0.97005 * 119.99713 * 184.95823 * 14 13 11 35 35 H 1.09001 * 110.01415 * 355.22567 * 19 10 8 36 36 H 1.08995 * 110.48874 * 335.77971 * 20 19 10 37 37 H 1.09003 * 110.48469 * 98.42749 * 20 19 10 38 38 H 1.09007 * 110.71921 * 279.57426 * 21 20 19 39 39 H 1.09000 * 110.92286 * 156.29846 * 21 20 19 40 40 H 1.08991 * 110.49139 * 203.40259 * 22 21 20 41 41 H 1.09006 * 110.59691 * 80.81460 * 22 21 20 42 42 H 1.08996 * 110.03638 * 238.56809 * 23 19 10 43 43 H 1.08997 * 110.03126 * 359.95326 * 23 19 10 44 44 H 1.08001 * 120.08673 * 179.75030 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1045 -0.0641 -0.0006 6 6 5.4788 -0.1807 0.0051 7 6 6.2748 0.9669 -0.0004 8 6 7.7473 0.8482 0.0005 9 8 8.4270 1.7166 0.5125 10 7 8.3374 -0.2228 -0.5663 11 6 7.5802 -1.1500 -1.2299 12 1 7.6821 -2.1991 -0.9943 13 6 6.6797 -0.7413 -2.2075 14 7 6.7236 0.4882 -2.6682 15 14 5.4078 -1.9405 -2.8659 16 1 5.5669 -3.2522 -2.1882 17 1 4.0456 -1.4106 -2.6040 18 1 5.5995 -2.1120 -4.3285 19 6 9.7893 -0.3946 -0.4722 20 6 10.3915 -0.5821 -1.8800 21 6 11.5217 -1.6220 -1.6733 22 6 10.9096 -2.5908 -0.6313 23 6 10.1187 -1.6709 0.3217 24 6 5.6731 2.2266 -0.0005 25 6 4.2951 2.3300 -0.0008 26 9 3.7101 3.5477 -0.0004 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.4887 -0.9514 -0.0005 33 1 5.9386 -1.1579 0.0096 34 1 6.0513 0.7949 -3.2966 35 1 10.2369 0.4729 0.0129 36 1 9.6396 -0.9679 -2.5683 37 1 10.8005 0.3587 -2.2484 38 1 12.4177 -1.1442 -1.2768 39 1 11.7441 -2.1452 -2.6033 40 1 11.6965 -3.1153 -0.0895 41 1 10.2415 -3.3029 -1.1158 42 1 10.7269 -1.4230 1.1915 43 1 9.1984 -2.1620 0.6376 44 1 6.2831 3.1179 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865985593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:46 Heat of formation + Delta-G solvation = -95.155491 kcal Electronic energy + Delta-G solvation = -28329.197058 eV Core-core repulsion = 24354.234730 eV Total energy + Delta-G solvation = -3974.962328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.35958 -39.54205 -38.35424 -37.31854 -36.29364 -34.32895 -31.64996 -31.24054 -29.77584 -28.00241 -27.64953 -26.75741 -25.47503 -24.81009 -22.05212 -21.66015 -20.09775 -19.84256 -19.36212 -17.59109 -16.52829 -15.96347 -15.92279 -15.87851 -15.76650 -15.11809 -14.95005 -14.85778 -14.53399 -14.21948 -14.03393 -13.62827 -13.31324 -12.86826 -12.79630 -12.67686 -12.46095 -12.38666 -11.80973 -11.53598 -11.46428 -11.17184 -11.02829 -10.84797 -10.75921 -10.59089 -10.56992 -10.53476 -10.40976 -10.33279 -10.04562 -9.78078 -9.70485 -9.02372 -8.60660 -8.13831 -7.70253 -7.32872 -6.43202 -4.23434 1.65032 2.01590 3.11980 3.19628 3.24930 3.75022 3.81499 4.03510 4.46525 4.83021 4.92809 4.96019 5.07610 5.25776 5.30798 5.32383 5.35465 5.39942 5.50728 5.56590 5.57996 5.61269 5.95965 6.04115 6.10454 6.17038 6.18975 6.26916 6.28577 6.37461 6.46502 6.49384 6.56648 6.67339 6.76051 6.82497 6.86044 6.95784 7.07031 7.21703 7.30568 7.32868 7.37873 7.63486 7.87829 8.57276 8.85385 9.48194 9.91034 10.59512 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.004716 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.604676 B = 5935.412142 C = 6789.461802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.112 3.888 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.075 4.075 7 C -0.021 4.021 8 C 0.552 3.448 9 O -0.602 6.602 10 N -0.437 5.437 11 C -0.353 4.353 12 H 0.087 0.913 13 C 0.063 3.937 14 N -0.844 5.844 15 Si 0.888 3.112 16 H -0.263 1.263 17 H -0.264 1.264 18 H -0.282 1.282 19 C 0.133 3.867 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.106 4.106 25 C 0.076 3.924 26 F -0.150 7.150 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.272 0.728 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 -3.515 2.827 7.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.036 3.964 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.093 4.093 7 C -0.024 4.024 8 C 0.342 3.658 9 O -0.488 6.488 10 N -0.156 5.156 11 C -0.481 4.481 12 H 0.105 0.895 13 C -0.147 4.147 14 N -0.476 5.476 15 Si 0.713 3.287 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.208 1.208 19 C 0.029 3.971 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.166 4.166 24 C -0.126 4.126 25 C 0.057 3.943 26 F -0.129 7.129 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.177 0.823 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.030 -3.108 2.878 6.576 hybrid contribution -1.096 0.047 -0.851 1.389 sum -6.127 -3.061 2.027 7.142 Atomic orbital electron populations 1.22726 0.81214 1.02673 0.99853 1.87883 1.19368 1.27502 1.95422 1.21047 0.90354 0.84596 1.00400 1.19522 0.93590 0.93263 1.06601 1.20751 0.94748 0.96096 1.00119 1.22131 0.92238 1.00831 0.94075 1.19515 0.94353 0.92021 0.96559 1.18065 0.86698 0.82713 0.78342 1.90597 1.65442 1.41841 1.50960 1.43171 1.03699 1.21752 1.46969 1.19089 1.21119 0.90081 1.17792 0.89529 1.25553 0.98933 0.96370 0.93843 1.69856 1.32508 1.16816 1.28456 0.86510 0.81963 0.81182 0.79063 1.18733 1.18865 1.20794 1.21596 0.83611 0.96718 0.95135 1.22574 0.97239 0.97740 0.98300 1.22453 0.97905 0.97329 0.98393 1.22256 0.98524 0.97632 0.96993 1.22434 1.00002 0.96651 0.97560 1.20927 0.91694 0.98863 1.01071 1.17068 0.90883 0.78837 1.07544 1.91406 1.84659 1.42317 1.94552 0.89612 0.94140 0.94167 0.92220 0.92305 0.85098 0.82289 0.91745 0.90271 0.89197 0.92991 0.92500 0.92383 0.92918 0.91669 0.92785 0.91063 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.81 9.17 -35.23 -0.32 -6.13 16 3 C 0.11 1.74 5.90 36.01 0.21 1.95 16 4 C -0.13 -2.42 5.89 -104.45 -0.62 -3.03 16 5 C -0.10 -1.93 8.93 -39.65 -0.35 -2.28 16 6 C -0.07 -1.58 6.01 -39.17 -0.24 -1.81 16 7 C -0.02 -0.50 3.93 -104.98 -0.41 -0.91 16 8 C 0.55 13.94 6.74 -12.38 -0.08 13.86 16 9 O -0.60 -16.47 16.05 5.29 0.08 -16.39 16 10 N -0.44 -10.28 2.36 -107.64 -0.25 -10.54 16 11 C -0.35 -8.11 4.65 -15.00 -0.07 -8.18 16 12 H 0.09 1.93 7.41 -52.48 -0.39 1.54 16 13 C 0.06 1.48 3.04 -17.45 -0.05 1.43 16 14 N -0.84 -21.46 11.65 55.50 0.65 -20.82 16 15 Si 0.89 18.59 27.67 -169.99 -4.70 13.88 16 16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 C 0.13 2.80 3.29 -66.81 -0.22 2.58 16 20 C -0.12 -2.35 6.41 -25.03 -0.16 -2.51 16 21 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 22 C -0.12 -1.78 6.83 -25.07 -0.17 -1.95 16 23 C -0.13 -2.25 6.28 -25.61 -0.16 -2.41 16 24 C -0.11 -2.34 9.58 -39.09 -0.37 -2.72 16 25 C 0.08 1.52 7.24 -39.48 -0.29 1.23 16 26 F -0.15 -2.82 16.79 2.25 0.04 -2.78 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.13 2.38 6.99 -52.48 -0.37 2.02 16 33 H 0.16 3.34 5.13 -52.48 -0.27 3.07 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 36 H 0.09 1.97 6.87 -51.93 -0.36 1.61 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.31 7.20 -51.93 -0.37 0.93 16 44 H 0.13 2.95 7.91 -52.49 -0.42 2.54 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -27.62 353.97 -7.54 -35.16 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.32 Total: 7.66 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.04 Total: -5.39 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.39 Total: -31.35 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.24 Total: -22.52 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.70 Total: 13.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.62 -7.54 -35.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865985593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.995 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds