Wall clock time and date at job start Tue Mar 31 2020 13:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00060 * 2 1 4 4 C 1.50705 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.38360 * 119.85809 * 359.97438 * 4 3 2 6 6 C 1.37921 * 120.17934 * 180.30188 * 5 4 3 7 7 C 1.39660 * 119.89744 * 359.46931 * 6 5 4 8 8 C 1.47734 * 120.13942 * 180.23224 * 7 6 5 9 9 O 1.21586 * 120.00508 * 209.35349 * 8 7 6 10 10 N 1.34778 * 119.99861 * 29.35802 * 8 7 6 11 11 C 1.36876 * 119.99736 * 4.88291 * 10 8 7 12 12 H 1.08005 * 119.99737 * 231.05805 * 11 10 8 13 13 C 1.39051 * 120.00211 * 51.06313 * 11 10 8 14 14 N 1.31366 * 119.99700 * 12.41747 * 13 11 10 15 15 Si 1.86800 * 120.00140 * 192.41397 * 13 11 10 16 16 H 1.48494 * 109.46835 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46946 * 119.99818 * 15 13 11 18 18 H 1.48498 * 109.47177 * 239.99975 * 15 13 11 19 19 C 1.46502 * 120.00130 * 184.88540 * 10 8 7 20 20 C 1.54266 * 110.02906 * 233.83897 * 19 10 8 21 21 C 1.54964 * 104.15655 * 217.13571 * 20 19 10 22 22 C 1.54886 * 102.78178 * 37.88684 * 21 20 19 23 23 C 1.53869 * 110.03318 * 116.62015 * 19 10 8 24 24 C 1.39608 * 119.72428 * 0.52655 * 7 6 5 25 25 C 1.38191 * 119.81717 * 359.72810 * 24 7 6 26 26 F 1.35097 * 119.94830 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 299.99817 * 1 2 3 29 29 H 1.09001 * 109.47231 * 60.00136 * 1 2 3 30 30 H 1.08998 * 109.47551 * 60.00101 * 3 2 1 31 31 H 1.09000 * 109.47155 * 300.00101 * 3 2 1 32 32 H 1.08003 * 119.90731 * 0.02562 * 5 4 3 33 33 H 1.08004 * 120.04723 * 179.72850 * 6 5 4 34 34 H 0.97005 * 119.99713 * 184.95823 * 14 13 11 35 35 H 1.09001 * 110.01415 * 355.22567 * 19 10 8 36 36 H 1.08995 * 110.48874 * 335.77971 * 20 19 10 37 37 H 1.09003 * 110.48469 * 98.42749 * 20 19 10 38 38 H 1.09007 * 110.71921 * 279.57426 * 21 20 19 39 39 H 1.09000 * 110.92286 * 156.29846 * 21 20 19 40 40 H 1.08991 * 110.49139 * 203.40259 * 22 21 20 41 41 H 1.09006 * 110.59691 * 80.81460 * 22 21 20 42 42 H 1.08996 * 110.03638 * 238.56809 * 23 19 10 43 43 H 1.08997 * 110.03126 * 359.95326 * 23 19 10 44 44 H 1.08001 * 120.08673 * 179.75030 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1045 -0.0641 -0.0006 6 6 5.4788 -0.1807 0.0051 7 6 6.2748 0.9669 -0.0004 8 6 7.7473 0.8482 0.0005 9 8 8.4270 1.7166 0.5125 10 7 8.3374 -0.2228 -0.5663 11 6 7.5802 -1.1500 -1.2299 12 1 7.6821 -2.1991 -0.9943 13 6 6.6797 -0.7413 -2.2075 14 7 6.7236 0.4882 -2.6682 15 14 5.4078 -1.9405 -2.8659 16 1 5.5669 -3.2522 -2.1882 17 1 4.0456 -1.4106 -2.6040 18 1 5.5995 -2.1120 -4.3285 19 6 9.7893 -0.3946 -0.4722 20 6 10.3915 -0.5821 -1.8800 21 6 11.5217 -1.6220 -1.6733 22 6 10.9096 -2.5908 -0.6313 23 6 10.1187 -1.6709 0.3217 24 6 5.6731 2.2266 -0.0005 25 6 4.2951 2.3300 -0.0008 26 9 3.7101 3.5477 -0.0004 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.4887 -0.9514 -0.0005 33 1 5.9386 -1.1579 0.0096 34 1 6.0513 0.7949 -3.2966 35 1 10.2369 0.4729 0.0129 36 1 9.6396 -0.9679 -2.5683 37 1 10.8005 0.3587 -2.2484 38 1 12.4177 -1.1442 -1.2768 39 1 11.7441 -2.1452 -2.6033 40 1 11.6965 -3.1153 -0.0895 41 1 10.2415 -3.3029 -1.1158 42 1 10.7269 -1.4230 1.1915 43 1 9.1984 -2.1620 0.6376 44 1 6.2831 3.1179 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865985593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:45 Heat of formation + Delta-G solvation = -109.392950 kcal Electronic energy + Delta-G solvation = -28329.814441 eV Core-core repulsion = 24354.234730 eV Total energy + Delta-G solvation = -3975.579711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.91825 -41.29123 -39.77578 -38.64603 -37.94064 -36.10609 -33.33099 -32.87230 -31.41591 -29.45167 -29.06421 -28.03982 -26.95155 -26.34124 -23.62569 -23.25468 -21.68198 -21.34979 -21.03555 -19.27547 -17.92640 -17.61277 -17.46589 -17.28141 -17.10170 -16.60264 -16.40283 -16.35296 -16.18138 -15.81013 -15.51601 -15.19690 -15.04307 -14.42340 -14.13877 -14.10264 -13.90979 -13.87777 -13.43648 -13.12143 -12.98501 -12.70655 -12.51011 -12.38475 -12.30839 -12.20174 -12.07345 -11.95567 -11.86363 -11.81413 -11.39911 -11.30599 -10.91657 -10.74217 -10.48731 -9.78502 -9.41963 -9.11349 -8.26526 -6.10767 0.00919 0.36040 1.44673 1.50770 1.59162 2.03521 2.30929 2.65656 2.74408 3.06793 3.17420 3.36692 3.74962 3.87675 3.92994 3.95291 4.14363 4.21377 4.29885 4.35382 4.46430 4.51668 4.56655 4.59148 4.62885 4.71468 4.80051 4.83904 4.86663 4.94224 4.94402 5.09226 5.15597 5.19787 5.21173 5.27290 5.37190 5.44255 5.52413 5.55721 5.63996 5.65796 5.99093 6.07431 6.17826 6.69895 7.01621 7.58995 8.04883 8.76277 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.004716 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.604676 B = 5935.412142 C = 6789.461802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.115 3.885 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.074 4.074 7 C -0.044 4.044 8 C 0.531 3.469 9 O -0.642 6.642 10 N -0.437 5.437 11 C -0.351 4.351 12 H 0.098 0.902 13 C 0.037 3.963 14 N -0.877 5.877 15 Si 0.937 3.063 16 H -0.243 1.243 17 H -0.264 1.264 18 H -0.291 1.291 19 C 0.120 3.880 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.123 4.123 25 C 0.077 3.923 26 F -0.143 7.143 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.267 0.733 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -5.856 2.889 9.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.039 3.961 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.047 4.047 8 C 0.322 3.678 9 O -0.531 6.531 10 N -0.154 5.154 11 C -0.478 4.478 12 H 0.115 0.885 13 C -0.170 4.170 14 N -0.511 5.511 15 Si 0.760 3.240 16 H -0.166 1.166 17 H -0.188 1.188 18 H -0.218 1.218 19 C 0.016 3.984 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.143 4.143 25 C 0.058 3.942 26 F -0.121 7.121 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.442 -5.491 2.943 8.961 hybrid contribution -0.688 0.820 -0.864 1.376 sum -7.130 -4.671 2.078 8.773 Atomic orbital electron populations 1.22988 0.78787 1.04226 1.01123 1.87830 1.21948 1.27022 1.95664 1.21054 0.87773 0.85444 1.01859 1.19899 0.95864 0.92292 1.04103 1.20947 0.94000 0.97157 0.99237 1.22080 0.92973 0.99965 0.94240 1.19451 0.93453 0.93116 0.98689 1.18582 0.87826 0.82948 0.78427 1.90541 1.66468 1.43231 1.52900 1.43400 1.04851 1.21257 1.45931 1.19306 1.21005 0.90217 1.17245 0.88463 1.26111 1.00066 0.97132 0.93732 1.69986 1.33119 1.18737 1.29292 0.85754 0.79874 0.80461 0.77932 1.16575 1.18846 1.21782 1.21856 0.82336 0.97632 0.96543 1.22487 0.98108 0.98438 0.96550 1.22421 0.96717 0.96147 0.99639 1.22233 0.98971 0.96979 0.96320 1.22371 1.00321 0.95151 0.98154 1.20901 0.92867 0.98156 1.02381 1.17008 0.90125 0.79712 1.07369 1.91420 1.84307 1.41931 1.94469 0.88018 0.92544 0.93204 0.90140 0.91232 0.83202 0.82357 0.92306 0.92838 0.91729 0.94411 0.90848 0.90500 0.89669 0.91685 0.91470 0.91933 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.96 9.17 -148.98 -1.37 -12.33 16 3 C 0.11 3.22 5.90 71.24 0.42 3.64 16 4 C -0.12 -4.35 5.89 -19.76 -0.12 -4.46 16 5 C -0.10 -3.58 8.93 22.22 0.20 -3.38 16 6 C -0.07 -3.14 6.01 22.54 0.14 -3.01 16 7 C -0.04 -2.12 3.93 -20.09 -0.08 -2.20 16 8 C 0.53 28.21 6.74 86.75 0.58 28.80 16 9 O -0.64 -37.43 16.05 -3.99 -0.06 -37.49 16 10 N -0.44 -21.25 2.36 -612.73 -1.45 -22.70 16 11 C -0.35 -16.19 4.65 84.10 0.39 -15.80 16 12 H 0.10 4.24 7.41 -2.91 -0.02 4.22 16 13 C 0.04 1.72 3.04 84.96 0.26 1.98 16 14 N -0.88 -45.78 11.65 21.68 0.25 -45.53 16 15 Si 0.94 37.23 27.67 68.60 1.90 39.13 16 16 H -0.24 -8.80 7.11 99.48 0.71 -8.10 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.12 5.17 3.29 45.71 0.15 5.32 16 20 C -0.12 -4.65 6.41 31.70 0.20 -4.45 16 21 C -0.11 -3.23 6.91 31.91 0.22 -3.01 16 22 C -0.11 -2.98 6.83 31.67 0.22 -2.76 16 23 C -0.12 -4.17 6.28 31.32 0.20 -3.97 16 24 C -0.12 -5.68 9.58 22.59 0.22 -5.46 16 25 C 0.08 3.07 7.24 22.34 0.16 3.24 16 26 F -0.14 -5.25 16.79 44.97 0.75 -4.50 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.15 5.06 6.99 -2.91 -0.02 5.04 16 33 H 0.16 6.61 5.13 -2.91 -0.01 6.59 16 34 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 35 H 0.05 2.55 6.95 -2.39 -0.02 2.53 16 36 H 0.06 2.88 6.87 -2.39 -0.02 2.86 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.25 7.20 -2.39 -0.02 2.23 16 44 H 0.11 5.54 7.91 -2.91 -0.02 5.51 16 Total: -1.00 -62.07 353.97 5.44 -56.63 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 1.01 Total: 30.64 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.41 Total: -3.86 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.20 Total: -68.23 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.43 Total: -49.82 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.90 Total: 39.13 kcal Total: -62.07 5.44 -56.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865985593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.767 kcal (2) G-P(sol) polarization free energy of solvation -62.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds