Wall clock time and date at job start Tue Mar 31 2020 13:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99762 * 2 1 4 4 C 1.50704 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.38343 * 119.86619 * 359.97438 * 4 3 2 6 6 C 1.37943 * 120.17332 * 179.97438 * 5 4 3 7 7 C 1.39594 * 119.90617 * 0.02711 * 6 5 4 8 8 C 1.47851 * 120.13327 * 180.02562 * 7 6 5 9 9 O 1.21557 * 120.00233 * 36.89962 * 8 7 6 10 10 N 1.34777 * 119.99981 * 216.90433 * 8 7 6 11 11 C 1.46927 * 120.63029 * 185.45661 * 10 8 7 12 12 C 1.52756 * 109.00729 * 233.57994 * 11 10 8 13 13 C 1.53042 * 109.38530 * 305.58811 * 12 11 10 14 14 C 1.50700 * 109.44794 * 181.25237 * 13 12 11 15 15 H 1.08002 * 119.99780 * 245.34677 * 14 13 12 16 16 C 1.37874 * 120.00177 * 65.35594 * 14 13 12 17 17 N 1.31517 * 120.00133 * 355.36493 * 16 14 13 18 18 Si 1.86797 * 120.00391 * 175.36627 * 16 14 13 19 19 H 1.48501 * 109.47256 * 94.99463 * 18 16 14 20 20 H 1.48504 * 109.47535 * 214.99938 * 18 16 14 21 21 H 1.48504 * 109.46687 * 334.99568 * 18 16 14 22 22 C 1.53042 * 109.53919 * 61.23863 * 13 12 11 23 23 C 1.46928 * 120.63289 * 5.72995 * 10 8 7 24 24 C 1.39526 * 119.73603 * 359.97438 * 7 6 5 25 25 C 1.38213 * 119.82264 * 359.72621 * 24 7 6 26 26 F 1.35101 * 119.95462 * 180.27226 * 25 24 7 27 27 H 1.08997 * 109.47107 * 59.99935 * 1 2 3 28 28 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47201 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.47114 * 299.99762 * 3 2 1 31 31 H 1.08998 * 109.47384 * 60.00289 * 3 2 1 32 32 H 1.07999 * 119.90991 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.04915 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.58904 * 353.41514 * 11 10 8 35 35 H 1.08999 * 109.58879 * 113.84008 * 11 10 8 36 36 H 1.08997 * 109.56816 * 185.55437 * 12 11 10 37 37 H 1.09000 * 109.36301 * 65.49742 * 12 11 10 38 38 H 1.08997 * 109.46104 * 301.21744 * 13 12 11 39 39 H 0.96996 * 120.00477 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.49902 * 178.68566 * 22 13 12 41 41 H 1.09004 * 109.49728 * 58.58386 * 22 13 12 42 42 H 1.09000 * 109.58664 * 246.16299 * 23 10 8 43 43 H 1.09004 * 109.58346 * 6.44220 * 23 10 8 44 44 H 1.07999 * 120.09238 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1045 -0.0639 -0.0006 6 6 5.4791 -0.1802 -0.0017 7 6 6.2746 0.9669 -0.0023 8 6 7.7483 0.8481 -0.0041 9 8 8.2858 -0.0397 -0.6370 10 7 8.4958 1.7241 0.6962 11 6 9.9622 1.6936 0.6097 12 6 10.5418 1.5970 2.0198 13 6 9.9859 2.7368 2.8766 14 6 10.5805 2.6610 4.2593 15 1 9.9475 2.4493 5.1084 16 6 11.9324 2.8621 4.4404 17 7 12.7177 3.0294 3.3988 18 14 12.6488 2.8969 6.1652 19 1 13.1626 1.5483 6.5151 20 1 13.7607 3.8798 6.2197 21 1 11.5925 3.2904 7.1320 22 6 8.4634 2.6122 2.9688 23 6 7.8601 2.7239 1.5651 24 6 5.6734 2.2260 -0.0023 25 6 4.2952 2.3297 -0.0075 26 9 3.7103 3.5475 -0.0131 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.4889 -0.9512 0.0004 33 1 5.9391 -1.1573 -0.0012 34 1 10.2760 0.8275 0.0271 35 1 10.3193 2.6063 0.1326 36 1 11.6282 1.6730 1.9739 37 1 10.2618 0.6404 2.4609 38 1 10.2451 3.6928 2.4218 39 1 13.6687 3.1712 3.5261 40 1 8.0704 3.4105 3.5982 41 1 8.2029 1.6459 3.4008 42 1 8.0421 3.7223 1.1675 43 1 6.7868 2.5388 1.6106 44 1 6.2834 3.1173 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867312906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:19 Heat of formation + Delta-G solvation = -98.471909 kcal Electronic energy + Delta-G solvation = -26987.527149 eV Core-core repulsion = 23012.421010 eV Total energy + Delta-G solvation = -3975.106139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.13019 -40.41781 -38.96114 -37.72416 -36.81257 -33.72665 -32.55887 -31.12124 -30.87018 -30.09276 -27.87718 -26.52437 -25.80542 -23.51897 -23.13740 -22.33937 -21.83717 -20.21273 -18.85576 -17.64513 -17.14313 -16.64444 -16.48627 -16.46013 -16.17889 -15.69935 -15.58337 -15.36519 -14.70593 -14.64313 -14.55428 -13.87291 -13.34224 -13.31669 -13.26098 -13.13246 -12.80159 -12.65016 -12.47608 -12.12892 -12.04437 -11.75406 -11.57270 -11.42485 -11.19348 -10.96482 -10.66365 -10.46005 -10.27837 -10.12743 -9.71193 -9.59287 -9.32955 -8.99506 -8.88985 -8.84830 -8.40789 -8.06535 -6.04483 -4.10061 0.61828 0.98086 2.79297 3.20543 3.26138 3.27712 3.35384 3.38370 3.55586 4.00891 4.31773 4.40377 4.56594 4.67369 4.79807 4.88045 4.95788 4.98217 5.04959 5.13895 5.26145 5.26782 5.37602 5.51552 5.70401 5.72447 5.84522 5.87781 5.97680 6.00565 6.14671 6.22861 6.37811 6.41367 6.57297 6.59025 6.69279 6.78190 6.92381 7.14642 7.29645 7.66337 7.78692 7.89640 8.01125 8.37406 8.41212 8.93661 9.55105 11.01957 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.002776 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.254524 B =10084.886506 C =10533.134141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.105 3.895 4 C -0.110 4.110 5 C -0.076 4.076 6 C -0.076 4.076 7 C -0.091 4.091 8 C 0.552 3.448 9 O -0.544 6.544 10 N -0.590 5.590 11 C 0.109 3.891 12 C -0.121 4.121 13 C 0.048 3.952 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.124 4.124 23 C 0.092 3.908 24 C -0.122 4.122 25 C 0.095 3.905 26 F -0.136 7.136 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.557 -2.274 -7.875 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.111 4.111 5 C -0.094 4.094 6 C -0.095 4.095 7 C -0.094 4.094 8 C 0.340 3.660 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.012 4.012 12 C -0.160 4.160 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.162 4.162 23 C -0.030 4.030 24 C -0.142 4.142 25 C 0.076 3.924 26 F -0.114 7.114 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.959 -2.798 -8.242 22.694 hybrid contribution 0.184 0.630 1.030 1.222 sum -20.774 -2.168 -7.211 22.097 Atomic orbital electron populations 1.22777 0.80331 1.03125 1.00240 1.87837 1.20139 1.26966 1.95538 1.21124 0.89237 0.85324 1.01436 1.19802 0.94782 0.92963 1.03584 1.20838 0.94026 0.97015 0.97485 1.21328 0.92986 0.98562 0.96623 1.19908 0.94116 0.93272 1.02110 1.18178 0.86004 0.81805 0.80035 1.90757 1.73266 1.33658 1.44617 1.48171 1.08035 1.32758 1.43192 1.21865 0.76873 1.01678 1.00830 1.21938 1.03386 0.99499 0.91159 1.18658 0.88154 0.94659 0.95550 1.21163 0.92985 1.48293 0.92746 0.92711 1.24969 0.97200 0.95096 0.96689 1.69870 1.04670 1.49337 1.28966 0.86613 0.78821 0.77792 0.84970 1.20811 1.21199 1.19920 1.22027 1.00038 1.01169 0.92996 1.22325 0.97184 0.91180 0.92329 1.21452 0.92802 0.98857 1.01044 1.17156 0.90672 0.79542 1.05063 1.91504 1.84407 1.41496 1.94017 0.93845 0.89246 0.93776 0.91403 0.91294 0.83474 0.84169 0.90374 0.91959 0.88182 0.94196 0.95191 0.92948 0.91868 0.92815 0.91539 0.90189 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.44 9.17 -35.23 -0.32 -3.77 16 3 C 0.11 0.92 5.90 36.01 0.21 1.13 16 4 C -0.11 -1.19 5.89 -104.47 -0.62 -1.81 16 5 C -0.08 -0.83 9.36 -39.65 -0.37 -1.20 16 6 C -0.08 -0.97 9.62 -39.18 -0.38 -1.34 16 7 C -0.09 -1.30 5.24 -104.98 -0.55 -1.85 16 8 C 0.55 9.76 7.36 -12.33 -0.09 9.67 16 9 O -0.54 -11.17 16.28 5.32 0.09 -11.08 16 10 N -0.59 -10.55 2.98 -174.14 -0.52 -11.07 16 11 C 0.11 2.13 6.41 -3.93 -0.03 2.11 16 12 C -0.12 -2.76 5.18 -26.83 -0.14 -2.90 16 13 C 0.05 1.13 2.01 -91.73 -0.18 0.95 16 14 C -0.51 -13.58 8.49 -34.44 -0.29 -13.87 16 15 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.36 -17.82 -0.10 1.57 16 17 N -0.89 -24.63 11.54 55.43 0.64 -23.99 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 23 C 0.09 1.48 4.81 -3.71 -0.02 1.46 16 24 C -0.12 -1.54 7.34 -39.11 -0.29 -1.83 16 25 C 0.09 1.10 7.24 -39.48 -0.29 0.82 16 26 F -0.14 -1.54 16.79 2.25 0.04 -1.51 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.15 1.41 6.99 -52.49 -0.37 1.05 16 33 H 0.14 1.72 8.03 -52.49 -0.42 1.30 16 34 H 0.08 1.56 7.00 -51.93 -0.36 1.19 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 2.54 6.30 -51.93 -0.33 2.21 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.99 8.07 -51.93 -0.42 0.58 16 43 H 0.08 1.12 4.54 -51.93 -0.24 0.88 16 44 H 0.15 1.77 6.22 -52.49 -0.33 1.45 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -29.85 358.75 -8.07 -37.92 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.23 Total: 0.58 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.15 Total: -8.34 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.12 Total: -35.06 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.24 Total: -14.85 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.85 -8.07 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867312906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.551 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds