Wall clock time and date at job start Tue Mar 31 2020 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99762 * 2 1 4 4 C 1.50704 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.38343 * 119.86619 * 359.97438 * 4 3 2 6 6 C 1.37943 * 120.17332 * 179.97438 * 5 4 3 7 7 C 1.39594 * 119.90617 * 0.02711 * 6 5 4 8 8 C 1.47851 * 120.13327 * 180.02562 * 7 6 5 9 9 O 1.21557 * 120.00233 * 36.89962 * 8 7 6 10 10 N 1.34777 * 119.99981 * 216.90433 * 8 7 6 11 11 C 1.46927 * 120.63029 * 185.45661 * 10 8 7 12 12 C 1.52756 * 109.00729 * 233.57994 * 11 10 8 13 13 C 1.53042 * 109.38530 * 305.58811 * 12 11 10 14 14 C 1.50700 * 109.44794 * 181.25237 * 13 12 11 15 15 H 1.08002 * 119.99780 * 245.34677 * 14 13 12 16 16 C 1.37874 * 120.00177 * 65.35594 * 14 13 12 17 17 N 1.31517 * 120.00133 * 355.36493 * 16 14 13 18 18 Si 1.86797 * 120.00391 * 175.36627 * 16 14 13 19 19 H 1.48501 * 109.47256 * 94.99463 * 18 16 14 20 20 H 1.48504 * 109.47535 * 214.99938 * 18 16 14 21 21 H 1.48504 * 109.46687 * 334.99568 * 18 16 14 22 22 C 1.53042 * 109.53919 * 61.23863 * 13 12 11 23 23 C 1.46928 * 120.63289 * 5.72995 * 10 8 7 24 24 C 1.39526 * 119.73603 * 359.97438 * 7 6 5 25 25 C 1.38213 * 119.82264 * 359.72621 * 24 7 6 26 26 F 1.35101 * 119.95462 * 180.27226 * 25 24 7 27 27 H 1.08997 * 109.47107 * 59.99935 * 1 2 3 28 28 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47201 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.47114 * 299.99762 * 3 2 1 31 31 H 1.08998 * 109.47384 * 60.00289 * 3 2 1 32 32 H 1.07999 * 119.90991 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.04915 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.58904 * 353.41514 * 11 10 8 35 35 H 1.08999 * 109.58879 * 113.84008 * 11 10 8 36 36 H 1.08997 * 109.56816 * 185.55437 * 12 11 10 37 37 H 1.09000 * 109.36301 * 65.49742 * 12 11 10 38 38 H 1.08997 * 109.46104 * 301.21744 * 13 12 11 39 39 H 0.96996 * 120.00477 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.49902 * 178.68566 * 22 13 12 41 41 H 1.09004 * 109.49728 * 58.58386 * 22 13 12 42 42 H 1.09000 * 109.58664 * 246.16299 * 23 10 8 43 43 H 1.09004 * 109.58346 * 6.44220 * 23 10 8 44 44 H 1.07999 * 120.09238 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1045 -0.0639 -0.0006 6 6 5.4791 -0.1802 -0.0017 7 6 6.2746 0.9669 -0.0023 8 6 7.7483 0.8481 -0.0041 9 8 8.2858 -0.0397 -0.6370 10 7 8.4958 1.7241 0.6962 11 6 9.9622 1.6936 0.6097 12 6 10.5418 1.5970 2.0198 13 6 9.9859 2.7368 2.8766 14 6 10.5805 2.6610 4.2593 15 1 9.9475 2.4493 5.1084 16 6 11.9324 2.8621 4.4404 17 7 12.7177 3.0294 3.3988 18 14 12.6488 2.8969 6.1652 19 1 13.1626 1.5483 6.5151 20 1 13.7607 3.8798 6.2197 21 1 11.5925 3.2904 7.1320 22 6 8.4634 2.6122 2.9688 23 6 7.8601 2.7239 1.5651 24 6 5.6734 2.2260 -0.0023 25 6 4.2952 2.3297 -0.0075 26 9 3.7103 3.5475 -0.0131 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.4889 -0.9512 0.0004 33 1 5.9391 -1.1573 -0.0012 34 1 10.2760 0.8275 0.0271 35 1 10.3193 2.6063 0.1326 36 1 11.6282 1.6730 1.9739 37 1 10.2618 0.6404 2.4609 38 1 10.2451 3.6928 2.4218 39 1 13.6687 3.1712 3.5261 40 1 8.0704 3.4105 3.5982 41 1 8.2029 1.6459 3.4008 42 1 8.0421 3.7223 1.1675 43 1 6.7868 2.5388 1.6106 44 1 6.2834 3.1173 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867312906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:18 Heat of formation + Delta-G solvation = -114.545437 kcal Electronic energy + Delta-G solvation = -26988.224149 eV Core-core repulsion = 23012.421010 eV Total energy + Delta-G solvation = -3975.803140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.01539 -41.67925 -39.94220 -38.62433 -38.26072 -35.46572 -33.73001 -32.80028 -31.98299 -31.45275 -28.79193 -27.90946 -26.73052 -25.01569 -24.36534 -23.55101 -23.10913 -21.62697 -20.34333 -18.87078 -18.44529 -18.03687 -17.41451 -17.32882 -17.14613 -16.72052 -16.54615 -16.46084 -16.38333 -16.08092 -15.50338 -15.12737 -14.82509 -14.66523 -14.40781 -14.25571 -14.09841 -13.95457 -13.82350 -13.40806 -13.06883 -12.89860 -12.83938 -12.81640 -12.55891 -12.38134 -12.19039 -12.14134 -11.96163 -11.42763 -11.24815 -10.95666 -10.87429 -10.76420 -10.42371 -9.96711 -9.81640 -9.58393 -8.09283 -6.21696 -0.37437 0.05334 1.40702 1.42941 1.52344 1.55187 1.92571 2.43489 2.48171 2.60725 3.04028 3.18502 3.34827 3.69064 3.70740 3.95304 4.06463 4.08464 4.26063 4.29121 4.35926 4.36791 4.45278 4.54641 4.55474 4.61876 4.62559 4.69515 4.79256 4.84442 4.92048 4.93215 4.96171 5.12640 5.13135 5.19020 5.23276 5.40520 5.50257 5.64516 5.67829 5.96002 6.06994 6.14461 6.37505 6.38655 6.89624 7.00122 7.46311 8.95382 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.002776 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.254524 B =10084.886506 C =10533.134141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.104 3.896 4 C -0.101 4.101 5 C -0.070 4.070 6 C -0.078 4.078 7 C -0.110 4.110 8 C 0.553 3.447 9 O -0.579 6.579 10 N -0.594 5.594 11 C 0.120 3.880 12 C -0.110 4.110 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.117 4.117 23 C 0.099 3.901 24 C -0.121 4.121 25 C 0.096 3.904 26 F -0.132 7.132 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.009 0.991 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.378 -1.794 -7.677 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.028 3.972 4 C -0.103 4.103 5 C -0.088 4.088 6 C -0.097 4.097 7 C -0.113 4.113 8 C 0.343 3.657 9 O -0.461 6.461 10 N -0.325 5.325 11 C -0.003 4.003 12 C -0.149 4.149 13 C 0.027 3.973 14 C -0.570 4.570 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.155 4.155 23 C -0.023 4.023 24 C -0.140 4.140 25 C 0.077 3.923 26 F -0.110 7.110 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.812 -2.306 -8.034 25.236 hybrid contribution 0.966 0.453 0.957 1.434 sum -22.846 -1.853 -7.077 23.989 Atomic orbital electron populations 1.22970 0.78707 1.04189 1.01175 1.87800 1.21910 1.27000 1.95726 1.21202 0.87655 0.85733 1.02634 1.20107 0.96232 0.92465 1.01451 1.20958 0.93202 0.97838 0.96756 1.21402 0.93732 0.98093 0.96459 1.19617 0.91850 0.94669 1.05183 1.18671 0.87414 0.80703 0.78953 1.90729 1.74330 1.35031 1.46020 1.48180 1.07143 1.33418 1.43718 1.21552 0.78460 1.01753 0.98492 1.21695 1.01667 0.98416 0.93092 1.18627 0.91111 0.93518 0.94075 1.21550 0.93359 1.48011 0.94068 0.93034 1.25703 0.97736 0.95015 1.00075 1.69995 1.04758 1.50063 1.30642 0.85674 0.78140 0.77634 0.80980 1.20749 1.20905 1.19175 1.21894 0.97075 1.01123 0.95439 1.22408 0.98300 0.91586 0.89971 1.21447 0.93461 0.98299 1.00807 1.17105 0.90308 0.79931 1.04998 1.91519 1.84228 1.41310 1.93974 0.92838 0.88237 0.92897 0.90047 0.90056 0.81960 0.84343 0.90983 0.91266 0.91190 0.95857 0.97317 0.93038 0.90666 0.93681 0.89805 0.87360 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -6.01 9.17 -148.98 -1.37 -7.38 16 3 C 0.10 1.47 5.90 71.24 0.42 1.89 16 4 C -0.10 -1.90 5.89 -19.76 -0.12 -2.01 16 5 C -0.07 -1.37 9.36 22.22 0.21 -1.16 16 6 C -0.08 -1.87 9.62 22.53 0.22 -1.66 16 7 C -0.11 -3.02 5.24 -20.09 -0.11 -3.12 16 8 C 0.55 19.39 7.36 86.79 0.64 20.03 16 9 O -0.58 -24.14 16.28 -3.90 -0.06 -24.20 16 10 N -0.59 -21.01 2.98 -823.13 -2.45 -23.47 16 11 C 0.12 4.80 6.41 86.22 0.55 5.35 16 12 C -0.11 -5.19 5.18 30.53 0.16 -5.03 16 13 C 0.05 2.16 2.01 -11.51 -0.02 2.14 16 14 C -0.53 -28.50 8.49 25.60 0.22 -28.28 16 15 H 0.05 2.73 7.75 -2.91 -0.02 2.70 16 16 C 0.01 0.74 5.36 84.65 0.45 1.19 16 17 N -0.92 -51.85 11.54 21.45 0.25 -51.61 16 18 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.12 -4.44 5.30 30.67 0.16 -4.28 16 23 C 0.10 3.02 4.81 86.36 0.42 3.44 16 24 C -0.12 -2.78 7.34 22.57 0.17 -2.61 16 25 C 0.10 1.96 7.24 22.34 0.16 2.12 16 26 F -0.13 -2.59 16.79 44.97 0.75 -1.84 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 2.70 6.99 -2.91 -0.02 2.68 16 33 H 0.14 3.32 8.03 -2.91 -0.02 3.30 16 34 H 0.07 2.97 7.00 -2.39 -0.02 2.95 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 3.72 6.30 -2.39 -0.02 3.71 16 37 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.26 14.13 8.31 -92.71 -0.77 13.35 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 43 H 0.11 2.76 4.54 -2.38 -0.01 2.75 16 44 H 0.16 3.32 6.22 -2.91 -0.02 3.30 16 Total: -1.00 -64.98 358.75 4.93 -60.05 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.01 Total: 13.82 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.77 Total: -10.54 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.20 Total: -75.07 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.43 Total: -31.58 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.75 Total: -1.84 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.98 4.93 -60.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867312906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.499 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds