Wall clock time and date at job start Tue Mar 31 2020 13:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00072 * 2 1 4 4 C 1.50700 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.86548 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.17657 * 180.02562 * 5 4 3 7 7 C 1.39599 * 119.90384 * 359.97273 * 6 5 4 8 8 C 1.47845 * 120.13343 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99937 * 220.51572 * 8 7 6 10 10 N 1.34775 * 119.99818 * 40.50763 * 8 7 6 11 11 C 1.46924 * 120.63233 * 4.95391 * 10 8 7 12 12 C 1.53189 * 108.77635 * 126.36477 * 11 10 8 13 13 C 1.53045 * 109.31624 * 54.63342 * 12 11 10 14 14 C 1.53042 * 109.53686 * 298.63585 * 13 12 11 15 15 H 1.09001 * 109.49708 * 301.41201 * 14 13 12 16 16 C 1.50698 * 109.49815 * 181.34231 * 14 13 12 17 17 H 1.08009 * 119.99770 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00385 * 179.97438 * 16 14 13 19 19 N 1.31521 * 119.99537 * 0.02562 * 18 16 14 20 20 Si 1.86790 * 120.00210 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47375 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47585 * 120.00367 * 20 18 16 23 23 H 1.48505 * 109.46864 * 239.99935 * 20 18 16 24 24 C 1.46930 * 120.62694 * 184.66696 * 10 8 7 25 25 C 1.39534 * 119.73198 * 0.02562 * 7 6 5 26 26 C 1.38210 * 119.82655 * 359.97438 * 25 7 6 27 27 F 1.35103 * 119.95514 * 179.97438 * 26 25 7 28 28 H 1.09001 * 109.46821 * 300.00315 * 1 2 3 29 29 H 1.09001 * 109.47020 * 59.99816 * 1 2 3 30 30 H 1.08998 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47235 * 60.00144 * 3 2 1 32 32 H 1.09000 * 109.46909 * 299.99751 * 3 2 1 33 33 H 1.08007 * 119.91314 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.04934 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.58697 * 246.15287 * 11 10 8 36 36 H 1.09001 * 109.58531 * 6.57793 * 11 10 8 37 37 H 1.08997 * 109.50154 * 174.58725 * 12 11 10 38 38 H 1.09000 * 109.49896 * 294.68490 * 12 11 10 39 39 H 1.09005 * 109.45763 * 58.65432 * 13 12 11 40 40 H 1.08996 * 109.46414 * 178.61342 * 13 12 11 41 41 H 0.96997 * 119.99322 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.58984 * 353.42307 * 24 10 8 43 43 H 1.09003 * 109.58582 * 113.85399 * 24 10 8 44 44 H 1.08003 * 120.08192 * 179.72438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1046 -0.0639 0.0006 6 6 5.4791 -0.1803 0.0017 7 6 6.2747 0.9668 0.0023 8 6 7.7484 0.8479 0.0041 9 8 8.4177 1.5970 0.6885 10 7 8.3496 -0.0910 -0.7531 11 6 7.5641 -0.9316 -1.6670 12 6 8.1705 -0.8343 -3.0704 13 6 9.6565 -1.1945 -3.0059 14 6 10.3845 -0.2029 -2.0954 15 1 10.2518 0.8086 -2.4795 16 6 11.8531 -0.5385 -2.0586 17 1 12.2303 -1.3752 -2.6280 18 6 12.7156 0.2232 -1.2990 19 7 12.2564 1.2423 -0.6061 20 14 14.5361 -0.1924 -1.2540 21 1 14.7951 -1.3759 -2.1128 22 1 15.3206 0.9646 -1.7550 23 1 14.9399 -0.4968 0.1423 24 6 9.8039 -0.2892 -0.6850 25 6 5.6735 2.2259 0.0023 26 6 4.2953 2.3296 0.0012 27 9 3.7104 3.5475 0.0018 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.4890 -0.9514 -0.0004 34 1 5.9392 -1.1575 0.0020 35 1 7.5933 -1.9669 -1.3273 36 1 6.5322 -0.5812 -1.6897 37 1 7.6570 -1.5267 -3.7374 38 1 8.0588 0.1831 -3.4453 39 1 9.7687 -2.2030 -2.6076 40 1 10.0848 -1.1500 -4.0072 41 1 12.8631 1.7779 -0.0714 42 1 10.2493 0.4847 -0.0600 43 1 10.0195 -1.2711 -0.2636 44 1 6.2836 3.1171 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869231364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:22 Heat of formation + Delta-G solvation = -99.292254 kcal Electronic energy + Delta-G solvation = -27144.572531 eV Core-core repulsion = 23169.430819 eV Total energy + Delta-G solvation = -3975.141712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.05033 -40.23005 -38.83239 -37.65676 -36.64917 -33.55530 -32.34179 -31.72593 -30.75274 -29.74057 -27.85317 -26.25053 -25.08928 -24.54703 -22.87099 -22.15810 -21.77521 -20.08848 -18.76962 -17.51967 -17.13774 -16.62202 -16.44236 -16.29398 -15.83198 -15.67310 -15.50097 -15.23666 -14.62136 -14.47598 -14.33130 -13.78084 -13.63639 -13.36149 -13.26541 -13.01221 -12.71326 -12.61465 -12.33798 -12.10501 -11.91776 -11.88848 -11.56007 -11.37935 -11.00060 -10.86867 -10.49610 -10.41184 -10.25399 -10.22298 -9.90746 -9.43771 -9.14398 -9.03130 -8.93778 -8.66521 -8.44771 -7.79317 -6.00419 -4.09461 0.73269 1.08080 3.00064 3.24335 3.29370 3.38194 3.41073 3.46594 3.76395 4.13802 4.39804 4.42996 4.71857 4.76577 4.84019 4.90609 5.01417 5.02848 5.08270 5.24365 5.29086 5.29488 5.33865 5.49028 5.59345 5.68387 5.86598 5.92093 5.98174 6.05248 6.17201 6.22253 6.30197 6.59346 6.64979 6.67465 6.72928 6.84076 6.96268 7.11381 7.23763 7.62866 7.85863 7.97890 8.18840 8.37200 8.75765 8.95249 9.56460 11.04848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.002904 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.781176 B = 9641.075119 C =10304.750239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.106 3.894 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.102 4.102 7 C -0.085 4.085 8 C 0.545 3.455 9 O -0.526 6.526 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.112 3.888 25 C -0.103 4.103 26 C 0.097 3.903 27 F -0.137 7.137 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.124 0.876 43 H 0.045 0.955 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.812 -3.088 -0.165 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.116 4.116 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.089 4.089 8 C 0.331 3.669 9 O -0.403 6.403 10 N -0.327 5.327 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.008 4.008 25 C -0.122 4.122 26 C 0.077 3.923 27 F -0.116 7.116 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.063 0.937 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.269 -2.675 0.327 22.432 hybrid contribution 0.669 0.285 0.001 0.728 sum -21.600 -2.390 0.327 21.734 Atomic orbital electron populations 1.22771 0.80410 1.03082 1.00206 1.87835 1.20063 1.27020 1.95532 1.21108 0.89327 0.85238 1.01330 1.19752 0.94645 0.92958 1.04224 1.20800 0.94011 0.96934 0.97700 1.21562 0.93428 0.98553 0.98474 1.20074 0.94688 0.93212 1.00897 1.18173 0.86251 0.81270 0.81184 1.90827 1.65053 1.42024 1.42389 1.48434 1.10449 1.34535 1.39331 1.22024 0.95286 0.94805 0.90494 1.21956 0.98367 1.01530 0.95392 1.21634 0.92590 1.00088 1.00545 1.18902 0.94033 0.94879 0.90198 0.95293 1.21106 0.91542 1.14424 1.28800 0.92268 1.25067 0.98853 0.94829 0.95363 1.69898 1.34940 1.17654 1.29258 0.86532 0.85358 0.78297 0.77799 1.19791 1.21013 1.20970 1.22274 0.73859 1.02098 1.02585 1.21127 0.92333 0.98829 0.99922 1.17170 0.90697 0.79469 1.04930 1.91493 1.84397 1.41647 1.94029 0.93862 0.93841 0.89266 0.91484 0.91448 0.83587 0.84187 0.91757 0.90132 0.92102 0.92137 0.93131 0.92974 0.92671 0.85796 0.93669 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.50 9.17 -35.23 -0.32 -3.82 16 3 C 0.11 0.97 5.90 36.01 0.21 1.18 16 4 C -0.11 -1.31 5.89 -104.47 -0.62 -1.92 16 5 C -0.08 -0.85 9.36 -39.65 -0.37 -1.22 16 6 C -0.10 -1.27 7.37 -39.18 -0.29 -1.56 16 7 C -0.09 -1.34 5.14 -104.98 -0.54 -1.88 16 8 C 0.54 11.04 7.33 -12.33 -0.09 10.95 16 9 O -0.53 -12.98 16.35 5.32 0.09 -12.90 16 10 N -0.60 -11.79 2.98 -174.14 -0.52 -12.31 16 11 C 0.10 1.48 4.90 -3.71 -0.02 1.46 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 14 C 0.04 0.95 2.24 -91.87 -0.21 0.75 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -13.97 8.56 -34.44 -0.29 -14.27 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 19 N -0.88 -25.62 11.39 55.43 0.63 -24.99 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.11 2.67 5.39 -3.93 -0.02 2.64 16 25 C -0.10 -1.53 9.62 -39.11 -0.38 -1.90 16 26 C 0.10 1.25 7.24 -39.48 -0.29 0.96 16 27 F -0.14 -1.73 16.79 2.25 0.04 -1.69 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.15 1.39 6.99 -52.48 -0.37 1.02 16 34 H 0.14 1.56 6.56 -52.49 -0.34 1.22 16 35 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.08 1.05 4.68 -51.93 -0.24 0.81 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 3.48 5.11 -51.93 -0.27 3.22 16 43 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -31.50 359.09 -8.12 -39.63 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.26 Total: 1.01 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.17 Total: -6.51 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.11 Total: -37.30 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.24 Total: -16.72 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.50 -8.12 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.665 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds