Wall clock time and date at job start Tue Mar 31 2020 13:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00072 * 2 1 4 4 C 1.50700 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.86548 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.17657 * 180.02562 * 5 4 3 7 7 C 1.39599 * 119.90384 * 359.97273 * 6 5 4 8 8 C 1.47845 * 120.13343 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99937 * 220.51572 * 8 7 6 10 10 N 1.34775 * 119.99818 * 40.50763 * 8 7 6 11 11 C 1.46924 * 120.63233 * 4.95391 * 10 8 7 12 12 C 1.53189 * 108.77635 * 126.36477 * 11 10 8 13 13 C 1.53045 * 109.31624 * 54.63342 * 12 11 10 14 14 C 1.53042 * 109.53686 * 298.63585 * 13 12 11 15 15 H 1.09001 * 109.49708 * 301.41201 * 14 13 12 16 16 C 1.50698 * 109.49815 * 181.34231 * 14 13 12 17 17 H 1.08009 * 119.99770 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00385 * 179.97438 * 16 14 13 19 19 N 1.31521 * 119.99537 * 0.02562 * 18 16 14 20 20 Si 1.86790 * 120.00210 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47375 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47585 * 120.00367 * 20 18 16 23 23 H 1.48505 * 109.46864 * 239.99935 * 20 18 16 24 24 C 1.46930 * 120.62694 * 184.66696 * 10 8 7 25 25 C 1.39534 * 119.73198 * 0.02562 * 7 6 5 26 26 C 1.38210 * 119.82655 * 359.97438 * 25 7 6 27 27 F 1.35103 * 119.95514 * 179.97438 * 26 25 7 28 28 H 1.09001 * 109.46821 * 300.00315 * 1 2 3 29 29 H 1.09001 * 109.47020 * 59.99816 * 1 2 3 30 30 H 1.08998 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47235 * 60.00144 * 3 2 1 32 32 H 1.09000 * 109.46909 * 299.99751 * 3 2 1 33 33 H 1.08007 * 119.91314 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.04934 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.58697 * 246.15287 * 11 10 8 36 36 H 1.09001 * 109.58531 * 6.57793 * 11 10 8 37 37 H 1.08997 * 109.50154 * 174.58725 * 12 11 10 38 38 H 1.09000 * 109.49896 * 294.68490 * 12 11 10 39 39 H 1.09005 * 109.45763 * 58.65432 * 13 12 11 40 40 H 1.08996 * 109.46414 * 178.61342 * 13 12 11 41 41 H 0.96997 * 119.99322 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.58984 * 353.42307 * 24 10 8 43 43 H 1.09003 * 109.58582 * 113.85399 * 24 10 8 44 44 H 1.08003 * 120.08192 * 179.72438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1046 -0.0639 0.0006 6 6 5.4791 -0.1803 0.0017 7 6 6.2747 0.9668 0.0023 8 6 7.7484 0.8479 0.0041 9 8 8.4177 1.5970 0.6885 10 7 8.3496 -0.0910 -0.7531 11 6 7.5641 -0.9316 -1.6670 12 6 8.1705 -0.8343 -3.0704 13 6 9.6565 -1.1945 -3.0059 14 6 10.3845 -0.2029 -2.0954 15 1 10.2518 0.8086 -2.4795 16 6 11.8531 -0.5385 -2.0586 17 1 12.2303 -1.3752 -2.6280 18 6 12.7156 0.2232 -1.2990 19 7 12.2564 1.2423 -0.6061 20 14 14.5361 -0.1924 -1.2540 21 1 14.7951 -1.3759 -2.1128 22 1 15.3206 0.9646 -1.7550 23 1 14.9399 -0.4968 0.1423 24 6 9.8039 -0.2892 -0.6850 25 6 5.6735 2.2259 0.0023 26 6 4.2953 2.3296 0.0012 27 9 3.7104 3.5475 0.0018 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.4890 -0.9514 -0.0004 34 1 5.9392 -1.1575 0.0020 35 1 7.5933 -1.9669 -1.3273 36 1 6.5322 -0.5812 -1.6897 37 1 7.6570 -1.5267 -3.7374 38 1 8.0588 0.1831 -3.4453 39 1 9.7687 -2.2030 -2.6076 40 1 10.0848 -1.1500 -4.0072 41 1 12.8631 1.7779 -0.0714 42 1 10.2493 0.4847 -0.0600 43 1 10.0195 -1.2711 -0.2636 44 1 6.2836 3.1171 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869231364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:21 Heat of formation + Delta-G solvation = -118.233937 kcal Electronic energy + Delta-G solvation = -27145.393904 eV Core-core repulsion = 23169.430819 eV Total energy + Delta-G solvation = -3975.963085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.05973 -41.58711 -39.90151 -38.59730 -38.19040 -35.39166 -33.74271 -33.07627 -31.92414 -31.34905 -28.72705 -27.20122 -26.81858 -25.88780 -23.97606 -23.34324 -23.25387 -21.57682 -20.27500 -18.94401 -18.23592 -18.03968 -17.56075 -17.19711 -16.95897 -16.81946 -16.52333 -16.45289 -16.37920 -15.90522 -15.42117 -15.20440 -14.97835 -14.68656 -14.40444 -14.23638 -14.02394 -13.93734 -13.80717 -13.50758 -13.07606 -12.93917 -12.85577 -12.55906 -12.49996 -12.28761 -12.20857 -12.10215 -11.80687 -11.62749 -11.19337 -10.96541 -10.84550 -10.71360 -10.53601 -10.06191 -9.72616 -9.44395 -8.11530 -6.28996 -0.34495 0.05341 1.39370 1.41087 1.53165 1.63318 2.05190 2.41601 2.49864 2.60573 3.09781 3.17226 3.38949 3.69581 3.75097 3.94673 4.08651 4.10407 4.18125 4.31603 4.34851 4.36521 4.55850 4.58436 4.62890 4.63944 4.73482 4.79700 4.81246 4.90771 4.95226 4.96753 5.09431 5.11809 5.20011 5.24936 5.27213 5.35806 5.53064 5.61604 5.68587 5.89176 5.99604 6.15077 6.31745 6.56773 6.84657 7.18497 7.41665 8.92043 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.002904 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.781176 B = 9641.075119 C =10304.750239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.106 3.894 4 C -0.101 4.101 5 C -0.063 4.063 6 C -0.088 4.088 7 C -0.104 4.104 8 C 0.539 3.461 9 O -0.588 6.588 10 N -0.597 5.597 11 C 0.092 3.908 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.018 1.018 16 C -0.532 4.532 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.259 1.259 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.124 3.876 25 C -0.117 4.117 26 C 0.095 3.905 27 F -0.136 7.136 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.880 -5.821 -1.176 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.030 3.970 4 C -0.102 4.102 5 C -0.081 4.081 6 C -0.106 4.106 7 C -0.108 4.108 8 C 0.328 3.672 9 O -0.470 6.470 10 N -0.328 5.328 11 C -0.029 4.029 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.017 3.983 15 H 0.000 1.000 16 C -0.571 4.571 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.210 1.210 23 H -0.208 1.208 24 C 0.002 3.998 25 C -0.137 4.137 26 C 0.076 3.924 27 F -0.115 7.115 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.191 0.809 34 H 0.178 0.822 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.377 -5.447 -0.726 25.965 hybrid contribution 1.505 1.151 0.298 1.918 sum -23.872 -4.296 -0.427 24.260 Atomic orbital electron populations 1.22975 0.78714 1.04283 1.01076 1.87788 1.21851 1.26651 1.95709 1.21146 0.87505 0.85868 1.02476 1.20082 0.96161 0.92324 1.01656 1.21065 0.93284 0.97669 0.96054 1.21715 0.93848 0.97966 0.97111 1.19650 0.91703 0.94835 1.04576 1.18913 0.88234 0.80111 0.79982 1.90782 1.66976 1.44300 1.44921 1.48435 1.09159 1.35155 1.40017 1.22424 0.95876 0.95603 0.88992 1.21939 0.96063 1.01857 0.96759 1.21523 0.94695 0.98966 0.99077 1.18847 0.94057 0.93825 0.91527 0.99955 1.21547 0.93140 1.14195 1.28216 0.91741 1.25930 1.03441 0.94714 0.95109 1.70109 1.36223 1.18968 1.30280 0.85490 0.79891 0.78335 0.77862 1.18241 1.21040 1.20840 1.21696 0.76662 1.00192 1.01268 1.21025 0.93417 0.98100 1.01147 1.17099 0.89874 0.80172 1.05297 1.91494 1.84145 1.41800 1.94062 0.93071 0.92920 0.87980 0.90401 0.90128 0.80867 0.82209 0.88752 0.87235 0.87405 0.93692 0.91877 0.93002 0.93182 0.90576 0.93622 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.61 9.17 -148.98 -1.37 -6.98 16 3 C 0.11 1.55 5.90 71.24 0.42 1.97 16 4 C -0.10 -2.00 5.89 -19.77 -0.12 -2.11 16 5 C -0.06 -1.15 9.36 22.23 0.21 -0.94 16 6 C -0.09 -1.96 7.37 22.53 0.17 -1.79 16 7 C -0.10 -3.28 5.14 -20.09 -0.10 -3.38 16 8 C 0.54 22.85 7.33 86.79 0.64 23.49 16 9 O -0.59 -31.55 16.35 -3.89 -0.06 -31.61 16 10 N -0.60 -24.07 2.98 -823.14 -2.45 -26.52 16 11 C 0.09 2.57 4.90 86.36 0.42 2.99 16 12 C -0.13 -3.77 6.08 30.67 0.19 -3.58 16 13 C -0.10 -4.00 5.11 30.62 0.16 -3.84 16 14 C 0.04 1.86 2.24 -11.60 -0.03 1.83 16 15 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 16 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.01 0.41 5.31 84.65 0.45 0.86 16 19 N -0.92 -56.60 11.39 21.45 0.24 -56.36 16 20 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.12 6.19 5.39 86.22 0.46 6.66 16 25 C -0.12 -3.58 9.62 22.58 0.22 -3.36 16 26 C 0.09 2.34 7.24 22.34 0.16 2.50 16 27 F -0.14 -3.32 16.79 44.97 0.75 -2.56 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.17 2.35 6.99 -2.91 -0.02 2.33 16 34 H 0.16 2.92 6.56 -2.91 -0.02 2.90 16 35 H 0.09 2.14 8.12 -2.39 -0.02 2.12 16 36 H 0.11 2.46 4.68 -2.39 -0.01 2.45 16 37 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.08 4.61 5.11 -2.39 -0.01 4.60 16 43 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -75.29 359.09 4.86 -70.42 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.01 Total: 13.40 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.71 Total: -6.41 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.21 Total: -82.88 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.43 Total: -38.59 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.75 Total: -2.56 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.29 4.86 -70.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.811 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds