Wall clock time and date at job start Tue Mar 31 2020 13:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00344 * 2 1 4 4 C 1.50691 * 109.47465 * 179.97438 * 3 2 1 5 5 C 1.38348 * 119.86469 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17341 * 179.97438 * 5 4 3 7 7 C 1.39598 * 119.90717 * 0.02562 * 6 5 4 8 8 C 1.47850 * 120.13266 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00417 * 327.46251 * 8 7 6 10 10 N 1.34777 * 119.99920 * 147.45691 * 8 7 6 11 11 C 1.46933 * 120.63155 * 1.66489 * 10 8 7 12 12 C 1.53190 * 108.77897 * 233.58506 * 11 10 8 13 13 C 1.53040 * 109.31024 * 305.36645 * 12 11 10 14 14 C 1.53042 * 109.54086 * 61.36274 * 13 12 11 15 15 H 1.09003 * 109.49528 * 58.62266 * 14 13 12 16 16 C 1.50698 * 109.49862 * 178.68266 * 14 13 12 17 17 H 1.08008 * 119.99910 * 5.46344 * 16 14 13 18 18 C 1.37879 * 120.00026 * 185.46697 * 16 14 13 19 19 N 1.31508 * 119.99956 * 355.29457 * 18 16 14 20 20 Si 1.86800 * 119.99879 * 175.29475 * 18 16 14 21 21 H 1.48500 * 109.47239 * 94.99679 * 20 18 16 22 22 H 1.48500 * 109.47188 * 214.99857 * 20 18 16 23 23 H 1.48506 * 109.47371 * 334.99620 * 20 18 16 24 24 C 1.46927 * 120.63210 * 181.38552 * 10 8 7 25 25 C 1.39528 * 119.73216 * 359.97438 * 7 6 5 26 26 C 1.38212 * 119.82552 * 359.72575 * 25 7 6 27 27 F 1.35107 * 119.95182 * 180.29044 * 26 25 7 28 28 H 1.09000 * 109.47779 * 300.00409 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47132 * 300.00265 * 3 2 1 32 32 H 1.09006 * 109.47030 * 59.99828 * 3 2 1 33 33 H 1.08004 * 119.91490 * 0.02562 * 5 4 3 34 34 H 1.08007 * 120.04700 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.58341 * 353.37147 * 11 10 8 36 36 H 1.09005 * 109.58466 * 113.64984 * 11 10 8 37 37 H 1.09002 * 109.49490 * 65.31202 * 12 11 10 38 38 H 1.08996 * 109.49474 * 185.41092 * 12 11 10 39 39 H 1.09003 * 109.45866 * 181.38352 * 13 12 11 40 40 H 1.08998 * 109.45746 * 301.35530 * 13 12 11 41 41 H 0.97003 * 120.00188 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.58456 * 246.20326 * 24 10 8 43 43 H 1.08994 * 109.58553 * 6.62817 * 24 10 8 44 44 H 1.08005 * 120.08255 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1045 -0.0640 0.0006 6 6 5.4790 -0.1803 0.0006 7 6 6.2746 0.9667 0.0013 8 6 7.7483 0.8479 0.0008 9 8 8.2830 -0.0860 0.5660 10 7 8.4989 1.7749 -0.6266 11 6 7.8693 2.9287 -1.2833 12 6 8.3548 2.9957 -2.7346 13 6 9.8849 3.0182 -2.7559 14 6 10.4245 1.7326 -2.1248 15 1 10.0469 0.8708 -2.6753 16 6 11.9306 1.7411 -2.1755 17 1 12.4540 2.6159 -2.5325 18 6 12.6405 0.6322 -1.7661 19 7 12.0092 -0.3972 -1.2453 20 14 14.4988 0.5922 -1.9514 21 1 15.1325 1.0277 -0.6809 22 1 14.9345 -0.7905 -2.2732 23 1 14.9070 1.5075 -3.0473 24 6 9.9628 1.6542 -0.6617 25 6 5.6734 2.2259 0.0013 26 6 4.2952 2.3296 -0.0050 27 9 3.7104 3.5475 -0.0109 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 3.4889 -0.9514 -0.0004 34 1 5.9390 -1.1575 0.0001 35 1 6.7856 2.8128 -1.2655 36 1 8.1475 3.8436 -0.7600 37 1 7.9962 2.1220 -3.2789 38 1 7.9710 3.9009 -3.2052 39 1 10.2327 3.0906 -3.7864 40 1 10.2433 3.8783 -2.1903 41 1 12.5086 -1.1772 -0.9569 42 1 10.4103 2.4676 -0.0904 43 1 10.2609 0.6972 -0.2338 44 1 6.2835 3.1171 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869231365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:25 Heat of formation + Delta-G solvation = -84.319301 kcal Electronic energy + Delta-G solvation = -27207.813788 eV Core-core repulsion = 23233.321352 eV Total energy + Delta-G solvation = -3974.492436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.09004 -40.30416 -38.83386 -37.63205 -36.66568 -33.68566 -32.37103 -31.67565 -30.80028 -29.70801 -27.84415 -26.24129 -25.19053 -24.59501 -22.98107 -22.08026 -21.74646 -20.11706 -18.81497 -17.61592 -17.05742 -16.52020 -16.43811 -16.42398 -16.06851 -15.64576 -15.44826 -15.15327 -14.74228 -14.57657 -14.31591 -13.83926 -13.49208 -13.26667 -13.19430 -13.12766 -12.69645 -12.61208 -12.30538 -12.07635 -11.91063 -11.80886 -11.57422 -11.44310 -11.00188 -10.76866 -10.54480 -10.38738 -10.26848 -10.20497 -9.89145 -9.43765 -9.14512 -8.99579 -8.78733 -8.75405 -8.48475 -7.79234 -6.01534 -4.09526 0.72380 1.05016 3.00024 3.25238 3.30006 3.37999 3.40504 3.53156 3.76450 4.08909 4.39445 4.42756 4.61945 4.80096 4.85118 4.91100 5.03321 5.04908 5.08497 5.19970 5.29093 5.29564 5.30543 5.47360 5.59280 5.67561 5.80017 5.93078 5.96222 6.09126 6.14978 6.26116 6.29943 6.58965 6.63837 6.67836 6.74034 6.83304 6.94993 7.11415 7.20521 7.61056 7.83038 7.96635 8.16756 8.36538 8.75225 8.95391 9.56281 11.04609 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.002911 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.831126 B = 9614.828579 C =10275.683730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.114 4.114 5 C -0.075 4.075 6 C -0.075 4.075 7 C -0.087 4.087 8 C 0.545 3.455 9 O -0.528 6.528 10 N -0.595 5.595 11 C 0.075 3.925 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.032 0.968 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.114 3.886 25 C -0.138 4.138 26 C 0.093 3.907 27 F -0.138 7.138 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.045 0.955 43 H 0.119 0.881 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.921 5.168 1.649 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.115 4.115 5 C -0.093 4.093 6 C -0.094 4.094 7 C -0.091 4.091 8 C 0.332 3.668 9 O -0.405 6.405 10 N -0.326 5.326 11 C -0.047 4.047 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.050 0.950 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.006 4.006 25 C -0.157 4.157 26 C 0.074 3.926 27 F -0.116 7.116 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.137 0.863 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.474 4.371 2.021 22.007 hybrid contribution 0.716 0.529 -0.146 0.902 sum -20.757 4.900 1.874 21.410 Atomic orbital electron populations 1.22771 0.80408 1.03108 1.00179 1.87845 1.20069 1.26997 1.95520 1.21110 0.89333 0.85274 1.01297 1.19778 0.94672 0.93003 1.04026 1.20850 0.94075 0.96960 0.97454 1.21385 0.92892 0.98853 0.96310 1.20108 0.94725 0.93084 1.01159 1.18142 0.85586 0.82955 0.80135 1.90810 1.73108 1.32112 1.44479 1.48447 1.09500 1.22727 1.51939 1.22593 0.98834 0.89082 0.94236 1.21951 0.98766 1.01154 0.95310 1.21644 0.92190 1.00420 1.00650 1.19059 0.95357 0.92481 0.90971 0.94965 1.21070 0.90574 1.00310 1.44084 0.92349 1.25059 0.98511 0.95659 0.94769 1.69915 1.35577 1.06017 1.40148 0.86585 0.85717 0.77371 0.78368 1.20722 1.21149 1.19881 1.22462 0.73106 1.04111 1.00938 1.21756 0.92787 0.99331 1.01805 1.17176 0.90729 0.79450 1.05295 1.91493 1.84462 1.41572 1.94083 0.93869 0.93838 0.89259 0.91444 0.91487 0.83545 0.83994 0.88547 0.91614 0.92055 0.92142 0.92909 0.93214 0.92648 0.93645 0.86330 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.64 9.17 -35.23 -0.32 -3.96 16 3 C 0.11 0.97 5.90 36.00 0.21 1.18 16 4 C -0.11 -1.30 5.89 -104.47 -0.62 -1.92 16 5 C -0.08 -0.90 9.36 -39.65 -0.37 -1.27 16 6 C -0.08 -1.07 9.60 -39.18 -0.38 -1.45 16 7 C -0.09 -1.38 5.53 -104.98 -0.58 -1.96 16 8 C 0.55 11.05 7.45 -12.33 -0.09 10.96 16 9 O -0.53 -12.86 16.18 5.32 0.09 -12.77 16 10 N -0.59 -11.87 2.97 -173.61 -0.51 -12.38 16 11 C 0.08 1.17 4.90 -3.71 -0.02 1.15 16 12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 13 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 14 C 0.04 0.99 2.20 -91.43 -0.20 0.79 16 15 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 16 C -0.52 -14.04 8.49 -34.44 -0.29 -14.33 16 17 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 18 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 19 N -0.88 -25.57 11.64 55.43 0.65 -24.93 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.11 2.72 5.49 -3.49 -0.02 2.70 16 25 C -0.14 -1.83 7.42 -39.11 -0.29 -2.12 16 26 C 0.09 1.12 7.24 -39.48 -0.29 0.83 16 27 F -0.14 -1.57 16.79 2.25 0.04 -1.54 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.15 1.55 6.99 -52.48 -0.37 1.19 16 34 H 0.14 2.03 7.96 -52.48 -0.42 1.61 16 35 H 0.10 1.29 3.54 -53.52 -0.19 1.10 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.12 3.33 5.40 -51.93 -0.28 3.05 16 44 H 0.16 1.94 5.31 -52.48 -0.28 1.66 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -31.35 357.60 -8.06 -39.41 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.15 Total: 1.72 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.21 Total: -7.12 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.13 Total: -37.31 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.24 Total: -16.73 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.35 -8.06 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.907 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds