Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00344 * 2 1 4 4 C 1.50691 * 109.47465 * 179.97438 * 3 2 1 5 5 C 1.38348 * 119.86469 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17341 * 179.97438 * 5 4 3 7 7 C 1.39598 * 119.90717 * 0.02562 * 6 5 4 8 8 C 1.47850 * 120.13266 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00417 * 327.46251 * 8 7 6 10 10 N 1.34777 * 119.99920 * 147.45691 * 8 7 6 11 11 C 1.46933 * 120.63155 * 1.66489 * 10 8 7 12 12 C 1.53190 * 108.77897 * 233.58506 * 11 10 8 13 13 C 1.53040 * 109.31024 * 305.36645 * 12 11 10 14 14 C 1.53042 * 109.54086 * 61.36274 * 13 12 11 15 15 H 1.09003 * 109.49528 * 58.62266 * 14 13 12 16 16 C 1.50698 * 109.49862 * 178.68266 * 14 13 12 17 17 H 1.08008 * 119.99910 * 5.46344 * 16 14 13 18 18 C 1.37879 * 120.00026 * 185.46697 * 16 14 13 19 19 N 1.31508 * 119.99956 * 355.29457 * 18 16 14 20 20 Si 1.86800 * 119.99879 * 175.29475 * 18 16 14 21 21 H 1.48500 * 109.47239 * 94.99679 * 20 18 16 22 22 H 1.48500 * 109.47188 * 214.99857 * 20 18 16 23 23 H 1.48506 * 109.47371 * 334.99620 * 20 18 16 24 24 C 1.46927 * 120.63210 * 181.38552 * 10 8 7 25 25 C 1.39528 * 119.73216 * 359.97438 * 7 6 5 26 26 C 1.38212 * 119.82552 * 359.72575 * 25 7 6 27 27 F 1.35107 * 119.95182 * 180.29044 * 26 25 7 28 28 H 1.09000 * 109.47779 * 300.00409 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47132 * 300.00265 * 3 2 1 32 32 H 1.09006 * 109.47030 * 59.99828 * 3 2 1 33 33 H 1.08004 * 119.91490 * 0.02562 * 5 4 3 34 34 H 1.08007 * 120.04700 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.58341 * 353.37147 * 11 10 8 36 36 H 1.09005 * 109.58466 * 113.64984 * 11 10 8 37 37 H 1.09002 * 109.49490 * 65.31202 * 12 11 10 38 38 H 1.08996 * 109.49474 * 185.41092 * 12 11 10 39 39 H 1.09003 * 109.45866 * 181.38352 * 13 12 11 40 40 H 1.08998 * 109.45746 * 301.35530 * 13 12 11 41 41 H 0.97003 * 120.00188 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.58456 * 246.20326 * 24 10 8 43 43 H 1.08994 * 109.58553 * 6.62817 * 24 10 8 44 44 H 1.08005 * 120.08255 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1045 -0.0640 0.0006 6 6 5.4790 -0.1803 0.0006 7 6 6.2746 0.9667 0.0013 8 6 7.7483 0.8479 0.0008 9 8 8.2830 -0.0860 0.5660 10 7 8.4989 1.7749 -0.6266 11 6 7.8693 2.9287 -1.2833 12 6 8.3548 2.9957 -2.7346 13 6 9.8849 3.0182 -2.7559 14 6 10.4245 1.7326 -2.1248 15 1 10.0469 0.8708 -2.6753 16 6 11.9306 1.7411 -2.1755 17 1 12.4540 2.6159 -2.5325 18 6 12.6405 0.6322 -1.7661 19 7 12.0092 -0.3972 -1.2453 20 14 14.4988 0.5922 -1.9514 21 1 15.1325 1.0277 -0.6809 22 1 14.9345 -0.7905 -2.2732 23 1 14.9070 1.5075 -3.0473 24 6 9.9628 1.6542 -0.6617 25 6 5.6734 2.2259 0.0013 26 6 4.2952 2.3296 -0.0050 27 9 3.7104 3.5475 -0.0109 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 3.4889 -0.9514 -0.0004 34 1 5.9390 -1.1575 0.0001 35 1 6.7856 2.8128 -1.2655 36 1 8.1475 3.8436 -0.7600 37 1 7.9962 2.1220 -3.2789 38 1 7.9710 3.9009 -3.2052 39 1 10.2327 3.0906 -3.7864 40 1 10.2433 3.8783 -2.1903 41 1 12.5086 -1.1772 -0.9569 42 1 10.4103 2.4676 -0.0904 43 1 10.2609 0.6972 -0.2338 44 1 6.2835 3.1171 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869231365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = -102.916672 kcal Electronic energy + Delta-G solvation = -27208.620230 eV Core-core repulsion = 23233.321352 eV Total energy + Delta-G solvation = -3975.298878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.01522 -41.66676 -39.89855 -38.57960 -38.23148 -35.46501 -33.83519 -33.07031 -31.96420 -31.30846 -28.73282 -27.10836 -27.01917 -25.92472 -24.16512 -23.23501 -23.23026 -21.58989 -20.35572 -18.93358 -18.29597 -18.08892 -17.41231 -17.27436 -17.12875 -16.67546 -16.53832 -16.46392 -16.32552 -15.94246 -15.74615 -15.12289 -14.89429 -14.59056 -14.39657 -14.19467 -14.11329 -13.92795 -13.77701 -13.45304 -13.06375 -12.94206 -12.84968 -12.66857 -12.48697 -12.30959 -12.16955 -12.10619 -11.78943 -11.59749 -11.18358 -10.96399 -10.85815 -10.71445 -10.55033 -9.93386 -9.79837 -9.45017 -8.12780 -6.28833 -0.37499 0.03220 1.40098 1.40898 1.52291 1.65615 2.05870 2.41692 2.50857 2.61544 3.03776 3.16511 3.38700 3.67982 3.72351 3.93943 4.05302 4.06776 4.14351 4.31359 4.33715 4.37104 4.52013 4.54312 4.61450 4.62473 4.71708 4.75947 4.78470 4.80855 4.92523 4.95027 5.06868 5.11249 5.18970 5.22286 5.25602 5.35197 5.51566 5.59432 5.67015 5.86996 5.95458 6.15783 6.31196 6.54646 6.84520 7.17301 7.41433 8.91870 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.002911 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.831126 B = 9614.828579 C =10275.683730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.105 3.895 4 C -0.102 4.102 5 C -0.068 4.068 6 C -0.083 4.083 7 C -0.107 4.107 8 C 0.539 3.461 9 O -0.586 6.586 10 N -0.598 5.598 11 C 0.070 3.930 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.039 3.961 15 H -0.012 1.012 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.126 3.874 25 C -0.131 4.131 26 C 0.101 3.899 27 F -0.128 7.128 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.260 0.740 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.492 7.765 1.037 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.029 3.971 4 C -0.103 4.103 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.110 4.110 8 C 0.328 3.672 9 O -0.467 6.467 10 N -0.328 5.328 11 C -0.051 4.051 12 C -0.165 4.165 13 C -0.143 4.143 14 C 0.019 3.981 15 H 0.007 0.993 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.186 1.186 24 C 0.004 3.996 25 C -0.150 4.150 26 C 0.082 3.918 27 F -0.106 7.106 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.179 0.821 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.077 7.019 1.381 25.118 hybrid contribution 1.379 -0.277 0.045 1.407 sum -22.698 6.743 1.426 23.721 Atomic orbital electron populations 1.22967 0.78676 1.04144 1.01238 1.87809 1.21956 1.27132 1.95735 1.21213 0.87416 0.85702 1.02782 1.20112 0.96372 0.92330 1.01488 1.20927 0.92825 0.98087 0.96775 1.21378 0.93978 0.98020 0.96847 1.19672 0.91634 0.94923 1.04818 1.18862 0.87592 0.81866 0.78899 1.90766 1.74662 1.34366 1.46927 1.48446 1.08010 1.24202 1.52155 1.22992 1.00230 0.88108 0.93735 1.21929 0.95843 1.02845 0.95881 1.21534 0.94963 0.97697 1.00147 1.18990 0.94460 0.93492 0.91109 0.99338 1.21512 0.92206 1.00330 1.43288 0.91844 1.25919 1.03221 0.95406 0.94538 1.70113 1.37226 1.06635 1.41488 0.85541 0.80129 0.77324 0.78665 1.20210 1.21298 1.18554 1.21884 0.76091 1.01456 1.00154 1.21732 0.93625 0.98443 1.01209 1.17041 0.90141 0.79950 1.04708 1.91526 1.84155 1.41001 1.93931 0.92799 0.92750 0.88383 0.89766 0.89916 0.82087 0.85312 0.85760 0.89064 0.93309 0.87559 0.92862 0.92155 0.93124 0.93762 0.91066 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.44 9.17 -148.98 -1.37 -7.80 16 3 C 0.10 1.53 5.90 71.23 0.42 1.95 16 4 C -0.10 -2.03 5.89 -19.77 -0.12 -2.14 16 5 C -0.07 -1.53 9.36 22.23 0.21 -1.32 16 6 C -0.08 -2.39 9.60 22.53 0.22 -2.17 16 7 C -0.11 -3.39 5.53 -20.09 -0.11 -3.50 16 8 C 0.54 22.86 7.45 86.79 0.65 23.50 16 9 O -0.59 -30.85 16.18 -3.88 -0.06 -30.91 16 10 N -0.60 -24.43 2.97 -821.45 -2.44 -26.86 16 11 C 0.07 2.02 4.90 86.36 0.42 2.45 16 12 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16 13 C -0.11 -4.07 5.11 30.62 0.16 -3.91 16 14 C 0.04 1.97 2.20 -11.32 -0.02 1.94 16 15 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 16 C -0.53 -29.56 8.49 25.60 0.22 -29.34 16 17 H 0.06 3.36 7.75 -2.91 -0.02 3.33 16 18 C 0.01 0.49 5.36 84.66 0.45 0.94 16 19 N -0.92 -56.34 11.64 21.45 0.25 -56.09 16 20 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 C 0.13 6.35 5.49 86.51 0.48 6.82 16 25 C -0.13 -3.19 7.42 22.57 0.17 -3.02 16 26 C 0.10 2.10 7.24 22.34 0.16 2.26 16 27 F -0.13 -2.38 16.79 44.97 0.75 -1.63 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.16 3.13 6.99 -2.91 -0.02 3.11 16 34 H 0.13 3.96 7.96 -2.91 -0.02 3.94 16 35 H 0.13 2.96 3.54 -3.88 -0.01 2.94 16 36 H 0.09 2.23 8.13 -2.38 -0.02 2.21 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.07 4.31 5.40 -2.39 -0.01 4.29 16 44 H 0.17 3.66 5.31 -2.91 -0.02 3.64 16 Total: -1.00 -73.68 357.60 4.90 -68.78 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.01 Total: 15.60 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 4.73 Total: -7.67 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.19 Total: -82.96 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.43 Total: -38.71 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.75 Total: -1.63 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.68 4.90 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869231365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.138 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds