Wall clock time and date at job start Tue Mar 31 2020 13:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00142 * 2 1 4 4 C 1.52998 * 110.43503 * 63.75852 * 3 2 1 5 5 N 1.46500 * 109.47423 * 57.71725 * 4 3 2 6 6 C 1.34771 * 120.00782 * 184.93502 * 5 4 3 7 7 O 1.21584 * 119.99407 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00473 * 179.97438 * 6 5 4 9 9 C 1.39464 * 119.99991 * 184.90679 * 8 6 5 10 10 C 1.38649 * 119.64705 * 174.71217 * 9 8 6 11 11 C 1.40815 * 118.67056 * 180.24233 * 10 9 8 12 12 C 1.41550 * 120.99530 * 179.73411 * 11 10 9 13 13 H 1.07999 * 119.99955 * 154.86735 * 12 11 10 14 14 C 1.40033 * 119.99961 * 334.86698 * 12 11 10 15 15 N 1.30741 * 119.99742 * 334.94450 * 14 12 11 16 16 Si 1.86791 * 119.99781 * 154.94680 * 14 12 11 17 17 H 1.48504 * 109.47177 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47521 * 299.99784 * 16 14 12 19 19 H 1.48505 * 109.47552 * 60.00037 * 16 14 12 20 20 C 1.41161 * 118.00724 * 359.46984 * 11 10 9 21 21 C 1.36589 * 119.12744 * 0.26733 * 20 11 10 22 22 N 1.32068 * 121.25904 * 359.97438 * 21 20 11 23 23 C 1.54813 * 110.60329 * 186.38098 * 3 2 1 24 24 C 1.54997 * 102.09126 * 97.85162 * 23 3 2 25 25 O 1.44379 * 103.48974 * 37.02491 * 24 23 3 26 26 C 1.43744 * 106.97658 * 319.94129 * 25 24 23 27 27 H 1.09001 * 109.46832 * 184.91816 * 1 2 3 28 28 H 1.09003 * 109.47148 * 304.91320 * 1 2 3 29 29 H 1.08994 * 109.47162 * 64.91393 * 1 2 3 30 30 H 1.08995 * 109.47401 * 297.71833 * 4 3 2 31 31 H 1.09000 * 109.47448 * 177.71701 * 4 3 2 32 32 H 0.97008 * 119.99514 * 4.93391 * 5 4 3 33 33 H 0.96993 * 120.00208 * 4.90507 * 8 6 5 34 34 H 1.08000 * 120.66335 * 0.02562 * 10 9 8 35 35 H 0.96998 * 120.00718 * 354.12647 * 15 14 12 36 36 H 1.08001 * 120.43527 * 180.24522 * 20 11 10 37 37 H 1.08002 * 119.37107 * 179.97438 * 21 20 11 38 38 H 1.09004 * 110.90526 * 216.04878 * 23 3 2 39 39 H 1.08992 * 110.90886 * 339.65051 * 23 3 2 40 40 H 1.08994 * 110.62091 * 278.52057 * 24 23 3 41 41 H 1.09006 * 110.61493 * 155.52425 * 24 23 3 42 42 H 1.09006 * 109.87242 * 267.09158 * 26 25 24 43 43 H 1.09001 * 110.00495 * 146.01324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6484 2.0513 1.2859 5 7 2.1044 1.2782 2.4438 6 6 1.8063 1.6929 3.6909 7 8 1.1584 2.7085 3.8551 8 7 2.2255 0.9814 4.7560 9 6 1.8316 1.3525 6.0413 10 6 2.1751 0.5539 7.1214 11 6 1.7623 0.9454 8.4095 12 6 2.0809 0.1640 9.5460 13 1 2.1359 0.6259 10.5207 14 6 2.3249 -1.2078 9.4065 15 7 1.8094 -1.8644 8.4002 16 14 3.3868 -2.0995 10.6580 17 1 3.4909 -3.5336 10.2867 18 1 4.7427 -1.4942 10.6778 19 1 2.7716 -1.9797 12.0043 20 6 1.0261 2.1434 8.5341 21 6 0.7398 2.8676 7.4119 22 7 1.1388 2.4679 6.2181 23 6 3.5474 1.2173 -0.1611 24 6 3.7300 1.4732 -1.6788 25 8 2.7228 2.4637 -1.9769 26 6 1.5462 2.1025 -1.2345 27 1 -0.3633 -1.0239 0.0881 28 1 -0.3633 0.5882 0.8427 29 1 -0.3633 0.4357 -0.9307 30 1 0.5675 2.1811 1.3388 31 1 2.1322 3.0280 1.2879 32 1 2.6210 0.4676 2.3127 33 1 2.8011 0.2111 4.6286 34 1 2.7448 -0.3523 6.9772 35 1 1.1900 -1.4223 7.7988 36 1 0.6933 2.4827 9.5039 37 1 0.1765 3.7845 7.5026 38 1 4.0449 1.9892 0.4262 39 1 3.9111 0.2271 0.1130 40 1 3.5504 0.5602 -2.2464 41 1 4.7263 1.8647 -1.8849 42 1 0.8941 1.4840 -1.8513 43 1 1.0148 3.0001 -0.9180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:09 Heat of formation + Delta-G solvation = -76.317172 kcal Electronic energy + Delta-G solvation = -26990.261527 eV Core-core repulsion = 23036.036051 eV Total energy + Delta-G solvation = -3954.225476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76056 -39.71221 -38.18129 -37.38093 -34.82465 -34.25186 -33.87938 -31.73130 -30.31725 -29.88143 -28.62690 -27.09439 -25.89367 -25.69056 -23.01085 -22.06884 -21.81755 -20.66639 -20.20771 -18.38035 -18.02775 -17.63966 -16.87044 -16.17799 -15.86267 -15.43530 -15.16530 -14.89073 -14.84707 -14.60819 -14.44175 -14.39058 -14.05310 -13.61980 -13.45376 -13.37290 -12.98306 -12.54568 -12.37254 -12.17679 -12.03441 -11.97876 -11.75087 -11.57015 -11.22600 -10.99313 -10.50857 -10.44111 -10.20304 -10.02642 -9.89858 -9.82024 -9.68230 -9.19681 -8.91814 -8.18107 -7.83221 -7.39298 -7.07508 -4.70708 2.56131 2.78170 2.80262 3.10356 3.25073 3.28010 3.31061 3.59627 3.76611 3.93322 3.99633 4.21135 4.32800 4.58504 4.61133 4.74647 4.83187 4.98163 5.05892 5.17165 5.26184 5.33058 5.37986 5.38533 5.50994 5.53687 5.59998 5.62746 5.82841 6.37111 6.41230 6.46772 6.54997 6.65790 6.73805 6.79405 7.13917 7.24717 7.31586 7.54428 7.69793 7.99487 8.11352 8.29502 8.54981 8.72700 9.06278 9.61116 9.92907 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002710 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.777672 B =10329.425568 C =10994.800622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.367 6.367 3 C 0.071 3.929 4 C 0.127 3.873 5 N -0.746 5.746 6 C 0.692 3.308 7 O -0.532 6.532 8 N -0.669 5.669 9 C 0.377 3.623 10 C -0.305 4.305 11 C 0.131 3.869 12 C -0.513 4.513 13 H 0.080 0.920 14 C 0.041 3.959 15 N -0.790 5.790 16 Si 1.067 2.933 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.275 1.275 20 C -0.288 4.288 21 C 0.128 3.872 22 N -0.560 5.560 23 C -0.143 4.143 24 C 0.048 3.952 25 O -0.371 6.371 26 C 0.028 3.972 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.395 0.605 33 H 0.404 0.596 34 H 0.113 0.887 35 H 0.300 0.700 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -0.123 -16.934 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.286 6.286 3 C 0.031 3.969 4 C 0.002 3.998 5 N -0.405 5.405 6 C 0.392 3.608 7 O -0.403 6.403 8 N -0.316 5.316 9 C 0.150 3.850 10 C -0.331 4.331 11 C 0.123 3.877 12 C -0.543 4.543 13 H 0.098 0.902 14 C -0.182 4.182 15 N -0.413 5.413 16 Si 0.890 3.110 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.312 4.312 21 C -0.024 4.024 22 N -0.280 5.280 23 C -0.181 4.181 24 C -0.029 4.029 25 O -0.290 6.290 26 C -0.050 4.050 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.229 0.771 33 H 0.239 0.761 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.639 -0.108 -17.420 17.619 hybrid contribution -0.304 0.173 0.398 0.530 sum 2.334 0.065 -17.022 17.182 Atomic orbital electron populations 1.22881 0.80622 1.03470 1.00536 1.87983 1.20255 1.25529 1.94828 1.23154 0.94881 0.84567 0.94309 1.21588 1.00665 0.94634 0.82933 1.44979 1.61328 1.30215 1.03976 1.16051 0.80911 0.83824 0.80031 1.91022 1.41571 1.23801 1.83924 1.42570 1.52624 1.32383 1.04043 1.17828 0.93682 0.91357 0.82141 1.21264 1.14363 1.05141 0.92353 1.17600 0.86950 0.91226 0.91958 1.20571 1.43031 0.95240 0.95442 0.90199 1.27083 0.96270 0.95551 0.99305 1.70416 1.18611 1.40831 1.11430 0.83616 0.76329 0.76312 0.74774 1.19806 1.19908 1.20013 1.21612 1.09535 1.01694 0.98351 1.21533 0.95890 0.97339 0.87609 1.67275 1.19631 1.15752 1.25354 1.23198 0.92416 1.04675 0.97786 1.23604 0.92971 0.92419 0.93892 1.88904 1.22825 1.49183 1.68105 1.23763 0.89337 1.00180 0.91725 0.89126 0.93003 0.93698 0.90962 0.90506 0.77082 0.76132 0.86913 0.88628 0.87972 0.85879 0.88566 0.88582 0.91637 0.88440 0.90946 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.37 101.05 1.05 1.23 16 2 O -0.37 -3.69 10.12 -35.23 -0.36 -4.04 16 3 C 0.07 0.67 0.65 -89.09 -0.06 0.61 16 4 C 0.13 1.50 3.98 -4.04 -0.02 1.49 16 5 N -0.75 -10.11 5.28 -65.23 -0.34 -10.46 16 6 C 0.69 13.18 8.52 -86.93 -0.74 12.44 16 7 O -0.53 -12.46 14.60 5.29 0.08 -12.39 16 8 N -0.67 -13.06 5.40 -15.86 -0.09 -13.14 16 9 C 0.38 9.10 7.42 -154.68 -1.15 7.96 16 10 C -0.30 -7.63 7.87 -38.46 -0.30 -7.93 16 11 C 0.13 3.43 5.32 -106.55 -0.57 2.86 16 12 C -0.51 -13.22 9.05 -37.65 -0.34 -13.56 16 13 H 0.08 2.00 7.96 -52.49 -0.42 1.58 16 14 C 0.04 1.00 4.99 -17.34 -0.09 0.91 16 15 N -0.79 -20.07 12.34 55.55 0.69 -19.39 16 16 Si 1.07 20.57 30.00 -169.99 -5.10 15.47 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.29 -7.11 9.85 -39.07 -0.38 -7.50 16 21 C 0.13 3.11 11.10 -18.05 -0.20 2.91 16 22 N -0.56 -14.38 7.86 -12.75 -0.10 -14.48 16 23 C -0.14 -1.16 6.00 -24.72 -0.15 -1.31 16 24 C 0.05 0.37 7.72 38.21 0.29 0.67 16 25 O -0.37 -3.80 11.52 -35.23 -0.41 -4.20 16 26 C 0.03 0.25 6.62 37.73 0.25 0.50 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.51 6.42 -51.93 -0.33 0.18 16 29 H 0.04 0.32 6.53 -51.93 -0.34 -0.02 16 30 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 31 H 0.08 0.95 8.11 -51.93 -0.42 0.52 16 32 H 0.40 4.47 8.12 -40.82 -0.33 4.14 16 33 H 0.40 6.46 8.71 -40.82 -0.36 6.10 16 34 H 0.11 2.79 6.58 -52.49 -0.35 2.44 16 35 H 0.30 7.92 6.65 -40.82 -0.27 7.65 16 36 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 38 H 0.10 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 43 H 0.10 0.78 7.69 -51.93 -0.40 0.38 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.79 354.29 -8.32 -41.11 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -5.63 Total: 14.90 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.40 Total: 1.28 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.16 Total: -57.47 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.69 Total: -20.63 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.10 Total: 15.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -8.32 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.204 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds