Wall clock time and date at job start Tue Mar 31 2020 13:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00142 * 2 1 4 4 C 1.52998 * 110.43503 * 63.75852 * 3 2 1 5 5 N 1.46500 * 109.47423 * 57.71725 * 4 3 2 6 6 C 1.34771 * 120.00782 * 184.93502 * 5 4 3 7 7 O 1.21584 * 119.99407 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00473 * 179.97438 * 6 5 4 9 9 C 1.39464 * 119.99991 * 184.90679 * 8 6 5 10 10 C 1.38649 * 119.64705 * 174.71217 * 9 8 6 11 11 C 1.40815 * 118.67056 * 180.24233 * 10 9 8 12 12 C 1.41550 * 120.99530 * 179.73411 * 11 10 9 13 13 H 1.07999 * 119.99955 * 154.86735 * 12 11 10 14 14 C 1.40033 * 119.99961 * 334.86698 * 12 11 10 15 15 N 1.30741 * 119.99742 * 334.94450 * 14 12 11 16 16 Si 1.86791 * 119.99781 * 154.94680 * 14 12 11 17 17 H 1.48504 * 109.47177 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47521 * 299.99784 * 16 14 12 19 19 H 1.48505 * 109.47552 * 60.00037 * 16 14 12 20 20 C 1.41161 * 118.00724 * 359.46984 * 11 10 9 21 21 C 1.36589 * 119.12744 * 0.26733 * 20 11 10 22 22 N 1.32068 * 121.25904 * 359.97438 * 21 20 11 23 23 C 1.54813 * 110.60329 * 186.38098 * 3 2 1 24 24 C 1.54997 * 102.09126 * 97.85162 * 23 3 2 25 25 O 1.44379 * 103.48974 * 37.02491 * 24 23 3 26 26 C 1.43744 * 106.97658 * 319.94129 * 25 24 23 27 27 H 1.09001 * 109.46832 * 184.91816 * 1 2 3 28 28 H 1.09003 * 109.47148 * 304.91320 * 1 2 3 29 29 H 1.08994 * 109.47162 * 64.91393 * 1 2 3 30 30 H 1.08995 * 109.47401 * 297.71833 * 4 3 2 31 31 H 1.09000 * 109.47448 * 177.71701 * 4 3 2 32 32 H 0.97008 * 119.99514 * 4.93391 * 5 4 3 33 33 H 0.96993 * 120.00208 * 4.90507 * 8 6 5 34 34 H 1.08000 * 120.66335 * 0.02562 * 10 9 8 35 35 H 0.96998 * 120.00718 * 354.12647 * 15 14 12 36 36 H 1.08001 * 120.43527 * 180.24522 * 20 11 10 37 37 H 1.08002 * 119.37107 * 179.97438 * 21 20 11 38 38 H 1.09004 * 110.90526 * 216.04878 * 23 3 2 39 39 H 1.08992 * 110.90886 * 339.65051 * 23 3 2 40 40 H 1.08994 * 110.62091 * 278.52057 * 24 23 3 41 41 H 1.09006 * 110.61493 * 155.52425 * 24 23 3 42 42 H 1.09006 * 109.87242 * 267.09158 * 26 25 24 43 43 H 1.09001 * 110.00495 * 146.01324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6484 2.0513 1.2859 5 7 2.1044 1.2782 2.4438 6 6 1.8063 1.6929 3.6909 7 8 1.1584 2.7085 3.8551 8 7 2.2255 0.9814 4.7560 9 6 1.8316 1.3525 6.0413 10 6 2.1751 0.5539 7.1214 11 6 1.7623 0.9454 8.4095 12 6 2.0809 0.1640 9.5460 13 1 2.1359 0.6259 10.5207 14 6 2.3249 -1.2078 9.4065 15 7 1.8094 -1.8644 8.4002 16 14 3.3868 -2.0995 10.6580 17 1 3.4909 -3.5336 10.2867 18 1 4.7427 -1.4942 10.6778 19 1 2.7716 -1.9797 12.0043 20 6 1.0261 2.1434 8.5341 21 6 0.7398 2.8676 7.4119 22 7 1.1388 2.4679 6.2181 23 6 3.5474 1.2173 -0.1611 24 6 3.7300 1.4732 -1.6788 25 8 2.7228 2.4637 -1.9769 26 6 1.5462 2.1025 -1.2345 27 1 -0.3633 -1.0239 0.0881 28 1 -0.3633 0.5882 0.8427 29 1 -0.3633 0.4357 -0.9307 30 1 0.5675 2.1811 1.3388 31 1 2.1322 3.0280 1.2879 32 1 2.6210 0.4676 2.3127 33 1 2.8011 0.2111 4.6286 34 1 2.7448 -0.3523 6.9772 35 1 1.1900 -1.4223 7.7988 36 1 0.6933 2.4827 9.5039 37 1 0.1765 3.7845 7.5026 38 1 4.0449 1.9892 0.4262 39 1 3.9111 0.2271 0.1130 40 1 3.5504 0.5602 -2.2464 41 1 4.7263 1.8647 -1.8849 42 1 0.8941 1.4840 -1.8513 43 1 1.0148 3.0001 -0.9180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:08 Heat of formation + Delta-G solvation = -99.790665 kcal Electronic energy + Delta-G solvation = -26991.279414 eV Core-core repulsion = 23036.036051 eV Total energy + Delta-G solvation = -3955.243363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78464 -41.11802 -39.88310 -38.17157 -36.50640 -35.67350 -35.60053 -32.63791 -32.20091 -30.88598 -30.13209 -27.81673 -27.73131 -26.83464 -23.86748 -23.67892 -23.56914 -21.83421 -21.49537 -20.05776 -19.57931 -18.54660 -17.99388 -17.37528 -16.80287 -16.66448 -16.46917 -16.28787 -16.10958 -15.90306 -15.83964 -15.60773 -15.34134 -15.16737 -14.91322 -14.63517 -14.19691 -14.04444 -13.73582 -13.54653 -13.17130 -12.84697 -12.79433 -12.66113 -12.36766 -12.19537 -11.97181 -11.76999 -11.75049 -11.57891 -11.41765 -11.01966 -10.90632 -10.60661 -10.22878 -10.13116 -9.74614 -9.30946 -8.92223 -6.69510 0.67205 0.91415 1.45495 1.54697 1.68315 1.83819 2.17923 2.32575 2.48977 2.74831 2.92838 3.03560 3.29037 3.42534 3.58485 3.72867 4.01541 4.05720 4.20447 4.28972 4.33803 4.44359 4.46499 4.57532 4.60238 4.64860 4.69640 4.75485 4.80173 4.81963 4.84657 4.87215 4.97836 5.27929 5.32666 5.45019 5.59176 5.65693 5.71693 5.82001 6.03869 6.05160 6.27265 6.58893 6.79727 6.86693 7.49855 7.77522 7.95799 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002710 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.777672 B =10329.425568 C =10994.800622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.375 6.375 3 C 0.079 3.921 4 C 0.126 3.874 5 N -0.721 5.721 6 C 0.691 3.309 7 O -0.577 6.577 8 N -0.661 5.661 9 C 0.375 3.625 10 C -0.314 4.314 11 C 0.104 3.896 12 C -0.537 4.537 13 H 0.081 0.919 14 C 0.009 3.991 15 N -0.801 5.801 16 Si 1.120 2.880 17 H -0.270 1.270 18 H -0.263 1.263 19 H -0.258 1.258 20 C -0.301 4.301 21 C 0.124 3.876 22 N -0.583 5.583 23 C -0.142 4.142 24 C 0.046 3.954 25 O -0.391 6.391 26 C 0.028 3.972 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.420 0.580 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -1.008 -17.647 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.294 6.294 3 C 0.038 3.962 4 C 0.002 3.998 5 N -0.380 5.380 6 C 0.391 3.609 7 O -0.452 6.452 8 N -0.310 5.310 9 C 0.147 3.853 10 C -0.340 4.340 11 C 0.096 3.904 12 C -0.567 4.567 13 H 0.099 0.901 14 C -0.210 4.210 15 N -0.423 5.423 16 Si 0.936 3.064 17 H -0.194 1.194 18 H -0.187 1.187 19 H -0.182 1.182 20 C -0.325 4.325 21 C -0.028 4.028 22 N -0.303 5.303 23 C -0.180 4.180 24 C -0.029 4.029 25 O -0.310 6.310 26 C -0.049 4.049 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.246 0.754 33 H 0.257 0.743 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.647 -1.019 -18.197 18.587 hybrid contribution -0.658 0.491 0.525 0.975 sum 2.989 -0.528 -17.672 17.931 Atomic orbital electron populations 1.22979 0.80061 1.03999 1.00827 1.87979 1.20927 1.25664 1.94794 1.23083 0.95872 0.84248 0.92988 1.21732 1.00119 0.94784 0.83211 1.44756 1.60205 1.30426 1.02564 1.16195 0.80440 0.83204 0.81055 1.90989 1.43600 1.25797 1.84780 1.42450 1.52675 1.32923 1.02936 1.18024 0.92885 0.90749 0.83662 1.21228 1.14983 1.05279 0.92550 1.18006 0.87474 0.92150 0.92777 1.20833 1.44162 0.96199 0.95487 0.90068 1.28530 0.96323 0.95964 1.00167 1.70533 1.19113 1.40677 1.12015 0.82964 0.75143 0.75230 0.73048 1.19433 1.18738 1.18236 1.21798 1.09816 1.01630 0.99239 1.21983 0.95532 0.98086 0.87180 1.67406 1.20410 1.16499 1.26010 1.23231 0.91199 1.05273 0.98252 1.23754 0.93262 0.92436 0.93499 1.88888 1.23547 1.50184 1.68385 1.23782 0.89295 1.00427 0.91427 0.88207 0.94563 0.91906 0.91846 0.90827 0.75374 0.74268 0.87192 0.90310 0.86703 0.83221 0.88664 0.87530 0.90870 0.86831 0.89952 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.37 113.37 1.18 1.45 16 2 O -0.37 -6.84 10.12 -148.98 -1.51 -8.35 16 3 C 0.08 1.35 0.65 -9.80 -0.01 1.35 16 4 C 0.13 2.89 3.98 86.38 0.34 3.23 16 5 N -0.72 -18.88 5.28 -478.56 -2.53 -21.40 16 6 C 0.69 26.16 8.52 179.06 1.53 27.68 16 7 O -0.58 -27.23 14.60 -3.98 -0.06 -27.29 16 8 N -0.66 -25.70 5.40 -322.37 -1.74 -27.44 16 9 C 0.38 18.28 7.42 132.76 0.98 19.27 16 10 C -0.31 -15.94 7.87 23.00 0.18 -15.76 16 11 C 0.10 5.53 5.32 -21.11 -0.11 5.42 16 12 C -0.54 -27.83 9.05 23.52 0.21 -27.62 16 13 H 0.08 4.06 7.96 -2.91 -0.02 4.04 16 14 C 0.01 0.41 4.99 85.29 0.43 0.84 16 15 N -0.80 -40.83 12.34 21.84 0.27 -40.57 16 16 Si 1.12 40.25 30.00 68.60 2.06 42.30 16 17 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 19 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 20 C -0.30 -14.98 9.85 22.60 0.22 -14.76 16 21 C 0.12 6.01 11.10 84.27 0.94 6.94 16 22 N -0.58 -30.12 7.86 -194.26 -1.53 -31.64 16 23 C -0.14 -2.01 6.00 31.90 0.19 -1.82 16 24 C 0.05 0.62 7.72 72.67 0.56 1.18 16 25 O -0.39 -7.32 11.52 -148.98 -1.72 -9.04 16 26 C 0.03 0.46 6.62 72.35 0.48 0.94 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 0.69 6.42 -2.39 -0.02 0.68 16 29 H 0.06 0.77 6.53 -2.39 -0.02 0.76 16 30 H 0.06 1.60 6.71 -2.39 -0.02 1.58 16 31 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 32 H 0.41 8.57 8.12 -92.70 -0.75 7.82 16 33 H 0.42 13.16 8.71 -92.71 -0.81 12.36 16 34 H 0.11 5.53 6.58 -2.91 -0.02 5.51 16 35 H 0.28 15.32 6.65 -92.71 -0.62 14.70 16 36 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 37 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 38 H 0.09 1.38 7.85 -2.38 -0.02 1.36 16 39 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.08 1.18 6.43 -2.38 -0.02 1.17 16 43 H 0.10 1.51 7.69 -2.39 -0.02 1.49 16 Total: -1.00 -70.68 354.29 0.03 -70.65 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -0.34 Total: 44.44 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 7.12 Total: 8.34 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -5.52 Total: -121.05 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -3.28 Total: -44.68 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.06 Total: 42.30 kcal Total: -70.68 0.03 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.143 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds