Wall clock time and date at job start Tue Mar 31 2020 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47232 * 2 1 4 4 C 1.42900 * 114.00047 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.82935 * 32.19037 * 4 3 2 6 6 C 1.55000 * 110.90514 * 268.54349 * 4 3 2 7 7 O 1.44374 * 103.62810 * 204.85784 * 6 4 3 8 8 C 1.43746 * 106.98168 * 39.98221 * 7 6 4 9 9 C 1.54105 * 107.28867 * 333.48771 * 8 7 6 10 10 H 1.09001 * 110.48916 * 120.70181 * 9 8 7 11 11 N 1.46508 * 110.48664 * 243.34900 * 9 8 7 12 12 C 1.34773 * 120.00136 * 273.54877 * 11 9 8 13 13 O 1.21584 * 119.99950 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99998 * 179.97438 * 12 11 9 15 15 C 1.39462 * 119.99993 * 175.60590 * 14 12 11 16 16 C 1.38636 * 119.64899 * 186.20210 * 15 14 12 17 17 C 1.40820 * 118.67343 * 179.76416 * 16 15 14 18 18 C 1.41553 * 120.99236 * 180.25603 * 17 16 15 19 19 H 1.08006 * 119.99536 * 201.03479 * 18 17 16 20 20 C 1.40025 * 120.00430 * 21.04094 * 18 17 16 21 21 N 1.30738 * 119.99860 * 14.21819 * 20 18 17 22 22 Si 1.86800 * 120.00014 * 194.22300 * 20 18 17 23 23 H 1.48504 * 109.46803 * 59.99727 * 22 20 18 24 24 H 1.48499 * 109.46843 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47212 * 300.00058 * 22 20 18 26 26 C 1.41154 * 118.00776 * 0.49675 * 17 16 15 27 27 C 1.36593 * 119.12388 * 359.73662 * 26 17 16 28 28 N 1.32065 * 121.26081 * 0.02562 * 27 26 17 29 29 H 1.09005 * 109.47147 * 60.00197 * 1 2 3 30 30 H 1.09003 * 109.47623 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47548 * 300.00186 * 1 2 3 32 32 H 1.09000 * 109.47548 * 239.99813 * 2 1 3 33 33 H 1.08997 * 109.47249 * 119.99514 * 2 1 3 34 34 H 1.08998 * 110.61568 * 86.27568 * 6 4 3 35 35 H 1.08998 * 110.61668 * 323.43843 * 6 4 3 36 36 H 1.09001 * 109.88090 * 92.90210 * 8 7 6 37 37 H 1.08997 * 109.88427 * 214.06219 * 8 7 6 38 38 H 0.96994 * 119.99375 * 93.54503 * 11 9 8 39 39 H 0.96996 * 119.99427 * 355.60795 * 14 12 11 40 40 H 1.08010 * 120.66140 * 359.97438 * 16 15 14 41 41 H 0.97001 * 120.00161 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.44300 * 179.76016 * 26 17 16 43 43 H 1.08005 * 119.36881 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8851 0.6313 -0.5436 6 6 3.9799 1.5402 1.4467 7 8 5.2401 2.2281 1.2948 8 6 5.0363 3.2684 0.3241 9 6 3.8813 2.8199 -0.5922 10 1 3.0631 3.5392 -0.5546 11 7 4.3545 2.6512 -1.9685 12 6 4.3838 3.7072 -2.8053 13 8 4.0181 4.8002 -2.4179 14 7 4.8196 3.5521 -4.0712 15 6 4.7643 4.6222 -4.9638 16 6 5.0924 4.4218 -6.2958 17 6 5.0246 5.5155 -7.1802 18 6 5.3435 5.3652 -8.5512 19 1 5.6187 6.2282 -9.1393 20 6 5.3021 4.0977 -9.1448 21 7 4.7114 3.1067 -8.5296 22 14 6.0910 3.8225 -10.8155 23 1 7.5408 4.1342 -10.7357 24 1 5.9114 2.4051 -11.2203 25 1 5.4485 4.7095 -11.8184 26 6 4.6341 6.7673 -6.6577 27 6 4.3344 6.8688 -5.3290 28 7 4.4041 5.8206 -4.5287 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.1345 0.5413 1.8544 35 1 3.3043 2.1126 2.0823 36 1 4.7705 4.1981 0.8273 37 1 5.9429 3.4093 -0.2643 38 1 4.6466 1.7794 -2.2773 39 1 5.1717 2.6961 -4.3613 40 1 5.3906 3.4456 -6.6488 41 1 4.6824 2.2288 -8.9410 42 1 4.5727 7.6333 -7.3001 43 1 4.0356 7.8248 -4.9249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:58 Heat of formation + Delta-G solvation = -72.377847 kcal Electronic energy + Delta-G solvation = -26700.355939 eV Core-core repulsion = 22746.301285 eV Total energy + Delta-G solvation = -3954.054654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46139 -39.39337 -37.94628 -37.55429 -34.61049 -34.08526 -33.74629 -31.85527 -30.51574 -29.68243 -28.79387 -27.92569 -26.00986 -23.56106 -23.01729 -22.17898 -21.85800 -21.02373 -20.08683 -18.33716 -17.73237 -17.34097 -16.94390 -16.25884 -15.75886 -15.50940 -15.30455 -15.11246 -14.73620 -14.37259 -14.18575 -14.16037 -13.89574 -13.37903 -13.10076 -13.01309 -12.80450 -12.65235 -12.49865 -12.36755 -11.88409 -11.79216 -11.55699 -11.43880 -11.19664 -11.06678 -10.89660 -10.31896 -10.19585 -10.12772 -9.86183 -9.75163 -9.60194 -9.37826 -8.86643 -7.98956 -7.72588 -7.00860 -6.78235 -4.62897 2.70131 2.79435 2.82177 2.99131 3.02246 3.16196 3.25984 3.78077 3.82957 3.89067 4.16260 4.46361 4.54226 4.60149 4.69062 4.75729 4.83058 4.98500 5.03357 5.14087 5.33319 5.34461 5.44427 5.60039 5.67117 5.72354 5.75569 5.84729 5.95848 6.47425 6.55176 6.58819 6.63120 6.81569 6.88015 6.93089 7.15135 7.24705 7.44146 7.49377 7.86647 8.10128 8.35274 8.46352 8.73309 8.75182 9.14135 9.74706 10.04765 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002762 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.324135 B =10133.913522 C =10860.518706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.051 3.949 5 H 0.084 0.916 6 C 0.029 3.971 7 O -0.372 6.372 8 C 0.038 3.962 9 C 0.140 3.860 10 H 0.114 0.886 11 N -0.745 5.745 12 C 0.693 3.307 13 O -0.529 6.529 14 N -0.666 5.666 15 C 0.354 3.646 16 C -0.250 4.250 17 C 0.141 3.859 18 C -0.450 4.450 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.789 5.789 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.286 4.286 27 C 0.120 3.880 28 N -0.554 5.554 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.392 0.608 39 H 0.404 0.596 40 H 0.136 0.864 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -10.841 13.518 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.286 6.286 4 C -0.009 4.009 5 H 0.102 0.898 6 C -0.049 4.049 7 O -0.291 6.291 8 C -0.040 4.040 9 C 0.033 3.967 10 H 0.132 0.868 11 N -0.403 5.403 12 C 0.393 3.607 13 O -0.399 6.399 14 N -0.313 5.313 15 C 0.128 3.872 16 C -0.276 4.276 17 C 0.133 3.867 18 C -0.481 4.481 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.414 5.414 22 Si 0.738 3.262 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.310 4.310 27 C -0.034 4.034 28 N -0.274 5.274 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.226 0.774 39 H 0.238 0.762 40 H 0.153 0.847 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.856 -9.842 14.899 18.084 hybrid contribution 0.729 -1.433 -2.156 2.690 sum -2.127 -11.275 12.743 17.147 Atomic orbital electron populations 1.21750 0.93417 1.02348 1.03460 1.22574 0.95947 0.83398 1.00182 1.87985 1.19020 1.26782 1.94812 1.23877 0.82558 0.97966 0.96451 0.89844 1.23940 0.86512 0.98382 0.96069 1.88919 1.30451 1.48083 1.61623 1.23697 0.99321 0.91025 0.89934 1.21983 0.96999 0.96679 0.81040 0.86776 1.45175 1.72287 1.11387 1.11491 1.16053 0.79534 0.84349 0.80793 1.91024 1.50774 1.23308 1.74824 1.42522 1.65299 1.13995 1.09531 1.17963 0.96706 0.86246 0.86304 1.21689 1.13658 1.02523 0.89704 1.17565 0.86139 0.90034 0.93010 1.19581 1.40316 0.93918 0.94332 0.90048 1.25977 0.92748 0.95545 1.00004 1.69749 1.30867 1.02432 1.38401 0.86271 0.80647 0.78027 0.81241 1.18734 1.20257 1.18867 1.21637 1.13869 0.98918 0.96547 1.21463 0.96383 0.95258 0.90248 1.67190 1.24103 0.97880 1.38184 0.91549 0.90992 0.91755 0.93054 0.93250 0.88589 0.90781 0.90806 0.88718 0.77440 0.76179 0.84658 0.90747 0.88086 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.15 0.38 -0.74 16 2 C 0.06 0.45 6.54 37.15 0.24 0.69 16 3 O -0.37 -4.04 10.11 -35.23 -0.36 -4.40 16 4 C 0.05 0.51 3.30 -24.63 -0.08 0.43 16 5 H 0.08 0.71 7.50 -51.93 -0.39 0.32 16 6 C 0.03 0.27 7.44 38.21 0.28 0.55 16 7 O -0.37 -4.42 11.52 -35.23 -0.41 -4.83 16 8 C 0.04 0.48 7.50 37.73 0.28 0.76 16 9 C 0.14 1.81 3.12 -66.30 -0.21 1.60 16 10 H 0.11 1.75 7.61 -51.93 -0.40 1.36 16 11 N -0.74 -10.34 5.06 -57.08 -0.29 -10.63 16 12 C 0.69 13.37 8.52 -86.92 -0.74 12.63 16 13 O -0.53 -12.48 14.32 5.29 0.08 -12.41 16 14 N -0.67 -13.17 5.40 -15.87 -0.09 -13.25 16 15 C 0.35 8.66 7.42 -154.68 -1.15 7.52 16 16 C -0.25 -6.34 8.66 -38.46 -0.33 -6.68 16 17 C 0.14 3.71 5.64 -106.55 -0.60 3.11 16 18 C -0.45 -11.52 9.14 -37.65 -0.34 -11.87 16 19 H 0.08 1.99 7.89 -52.48 -0.41 1.57 16 20 C 0.08 1.81 5.28 -17.35 -0.09 1.72 16 21 N -0.79 -19.16 10.60 55.55 0.59 -18.57 16 22 Si 0.91 17.75 29.58 -169.99 -5.03 12.72 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 24 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 C -0.29 -7.07 9.85 -39.07 -0.38 -7.45 16 27 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 28 N -0.55 -14.40 7.86 -12.76 -0.10 -14.50 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.39 4.22 8.38 -40.82 -0.34 3.87 16 39 H 0.40 6.48 8.71 -40.82 -0.36 6.13 16 40 H 0.14 3.39 5.89 -52.48 -0.31 3.09 16 41 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 42 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 43 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -32.47 362.98 -9.05 -41.52 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.98 Total: 13.87 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.94 Total: 5.00 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.11 Total: -56.95 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.69 Total: -21.63 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.47 -9.05 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.858 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds