Wall clock time and date at job start Tue Mar 31 2020 13:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47232 * 2 1 4 4 C 1.42900 * 114.00047 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.82935 * 32.19037 * 4 3 2 6 6 C 1.55000 * 110.90514 * 268.54349 * 4 3 2 7 7 O 1.44374 * 103.62810 * 204.85784 * 6 4 3 8 8 C 1.43746 * 106.98168 * 39.98221 * 7 6 4 9 9 C 1.54105 * 107.28867 * 333.48771 * 8 7 6 10 10 H 1.09001 * 110.48916 * 120.70181 * 9 8 7 11 11 N 1.46508 * 110.48664 * 243.34900 * 9 8 7 12 12 C 1.34773 * 120.00136 * 273.54877 * 11 9 8 13 13 O 1.21584 * 119.99950 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99998 * 179.97438 * 12 11 9 15 15 C 1.39462 * 119.99993 * 175.60590 * 14 12 11 16 16 C 1.38636 * 119.64899 * 186.20210 * 15 14 12 17 17 C 1.40820 * 118.67343 * 179.76416 * 16 15 14 18 18 C 1.41553 * 120.99236 * 180.25603 * 17 16 15 19 19 H 1.08006 * 119.99536 * 201.03479 * 18 17 16 20 20 C 1.40025 * 120.00430 * 21.04094 * 18 17 16 21 21 N 1.30738 * 119.99860 * 14.21819 * 20 18 17 22 22 Si 1.86800 * 120.00014 * 194.22300 * 20 18 17 23 23 H 1.48504 * 109.46803 * 59.99727 * 22 20 18 24 24 H 1.48499 * 109.46843 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47212 * 300.00058 * 22 20 18 26 26 C 1.41154 * 118.00776 * 0.49675 * 17 16 15 27 27 C 1.36593 * 119.12388 * 359.73662 * 26 17 16 28 28 N 1.32065 * 121.26081 * 0.02562 * 27 26 17 29 29 H 1.09005 * 109.47147 * 60.00197 * 1 2 3 30 30 H 1.09003 * 109.47623 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47548 * 300.00186 * 1 2 3 32 32 H 1.09000 * 109.47548 * 239.99813 * 2 1 3 33 33 H 1.08997 * 109.47249 * 119.99514 * 2 1 3 34 34 H 1.08998 * 110.61568 * 86.27568 * 6 4 3 35 35 H 1.08998 * 110.61668 * 323.43843 * 6 4 3 36 36 H 1.09001 * 109.88090 * 92.90210 * 8 7 6 37 37 H 1.08997 * 109.88427 * 214.06219 * 8 7 6 38 38 H 0.96994 * 119.99375 * 93.54503 * 11 9 8 39 39 H 0.96996 * 119.99427 * 355.60795 * 14 12 11 40 40 H 1.08010 * 120.66140 * 359.97438 * 16 15 14 41 41 H 0.97001 * 120.00161 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.44300 * 179.76016 * 26 17 16 43 43 H 1.08005 * 119.36881 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8851 0.6313 -0.5436 6 6 3.9799 1.5402 1.4467 7 8 5.2401 2.2281 1.2948 8 6 5.0363 3.2684 0.3241 9 6 3.8813 2.8199 -0.5922 10 1 3.0631 3.5392 -0.5546 11 7 4.3545 2.6512 -1.9685 12 6 4.3838 3.7072 -2.8053 13 8 4.0181 4.8002 -2.4179 14 7 4.8196 3.5521 -4.0712 15 6 4.7643 4.6222 -4.9638 16 6 5.0924 4.4218 -6.2958 17 6 5.0246 5.5155 -7.1802 18 6 5.3435 5.3652 -8.5512 19 1 5.6187 6.2282 -9.1393 20 6 5.3021 4.0977 -9.1448 21 7 4.7114 3.1067 -8.5296 22 14 6.0910 3.8225 -10.8155 23 1 7.5408 4.1342 -10.7357 24 1 5.9114 2.4051 -11.2203 25 1 5.4485 4.7095 -11.8184 26 6 4.6341 6.7673 -6.6577 27 6 4.3344 6.8688 -5.3290 28 7 4.4041 5.8206 -4.5287 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.1345 0.5413 1.8544 35 1 3.3043 2.1126 2.0823 36 1 4.7705 4.1981 0.8273 37 1 5.9429 3.4093 -0.2643 38 1 4.6466 1.7794 -2.2773 39 1 5.1717 2.6961 -4.3613 40 1 5.3906 3.4456 -6.6488 41 1 4.6824 2.2288 -8.9410 42 1 4.5727 7.6333 -7.3001 43 1 4.0356 7.8248 -4.9249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871734084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:57 Heat of formation + Delta-G solvation = -95.283341 kcal Electronic energy + Delta-G solvation = -26701.349196 eV Core-core repulsion = 22746.301285 eV Total energy + Delta-G solvation = -3955.047911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70709 -40.75855 -39.61263 -38.38118 -36.23537 -35.54530 -35.51472 -32.61963 -32.37891 -30.97280 -29.83681 -29.27837 -27.91606 -24.55936 -23.94951 -23.75983 -23.23109 -22.29456 -21.65698 -19.78831 -19.44725 -18.29055 -18.17462 -17.39327 -17.06271 -16.83595 -16.59670 -16.18646 -16.02836 -15.98043 -15.85700 -15.45964 -15.08730 -14.69753 -14.58787 -14.38655 -14.22147 -13.80804 -13.72349 -13.22978 -13.13714 -12.87639 -12.87453 -12.65949 -12.49205 -12.29407 -12.04666 -11.92784 -11.87132 -11.53782 -11.33643 -11.16733 -11.00816 -10.69152 -10.08758 -9.92235 -9.62181 -8.83886 -8.60320 -6.56572 0.84600 1.02649 1.42061 1.47043 1.53176 1.60560 2.19835 2.21459 2.35116 2.83702 2.93172 3.20218 3.29644 3.65711 3.78541 3.79650 4.00395 4.13240 4.16554 4.18586 4.30364 4.48803 4.57153 4.62135 4.68749 4.72549 4.73926 4.85790 4.86751 4.94577 5.01933 5.10951 5.26107 5.26311 5.37327 5.51395 5.60625 5.65694 5.81067 5.98326 6.16386 6.26460 6.57132 6.79942 6.83716 6.93768 7.57085 7.90269 8.26354 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.002762 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.324135 B =10133.913522 C =10860.518706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.391 6.391 4 C 0.060 3.940 5 H 0.106 0.894 6 C 0.030 3.970 7 O -0.380 6.380 8 C 0.045 3.955 9 C 0.135 3.865 10 H 0.086 0.914 11 N -0.721 5.721 12 C 0.692 3.308 13 O -0.575 6.575 14 N -0.658 5.658 15 C 0.351 3.649 16 C -0.266 4.266 17 C 0.111 3.889 18 C -0.479 4.479 19 H 0.084 0.916 20 C 0.038 3.962 21 N -0.809 5.809 22 Si 0.990 3.010 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.299 4.299 27 C 0.113 3.887 28 N -0.581 5.581 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.420 0.580 40 H 0.134 0.866 41 H 0.293 0.707 42 H 0.115 0.885 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -13.158 13.445 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.311 6.311 4 C 0.001 3.999 5 H 0.124 0.876 6 C -0.047 4.047 7 O -0.299 6.299 8 C -0.033 4.033 9 C 0.028 3.972 10 H 0.104 0.896 11 N -0.380 5.380 12 C 0.392 3.608 13 O -0.449 6.449 14 N -0.307 5.307 15 C 0.124 3.876 16 C -0.292 4.292 17 C 0.103 3.897 18 C -0.509 4.509 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.435 5.435 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.323 4.323 27 C -0.040 4.040 28 N -0.301 5.301 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.258 0.742 40 H 0.152 0.848 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.453 -12.235 14.865 19.408 hybrid contribution 0.531 -0.771 -2.071 2.273 sum -1.922 -13.006 12.794 18.345 Atomic orbital electron populations 1.21786 0.93309 1.03473 1.02451 1.22810 0.96130 0.82202 1.01649 1.87970 1.19309 1.28858 1.94974 1.23825 0.82619 0.96526 0.96896 0.87611 1.24122 0.85398 0.99689 0.95516 1.88914 1.31873 1.47890 1.61193 1.23494 0.98526 0.91298 0.89966 1.22059 0.96452 0.98347 0.80332 0.89587 1.44901 1.70970 1.10851 1.11236 1.16194 0.78992 0.84800 0.80800 1.90990 1.52694 1.25541 1.75637 1.42384 1.65236 1.13722 1.09389 1.18173 0.95683 0.86859 0.86905 1.21677 1.15012 1.02378 0.90140 1.18010 0.86740 0.91002 0.93960 1.19885 1.41405 0.95224 0.94422 0.89786 1.26844 0.92581 0.94614 1.03884 1.69776 1.30523 1.03092 1.40071 0.85134 0.79399 0.78450 0.76037 1.18427 1.18880 1.18523 1.21820 1.14362 0.99133 0.97030 1.21891 0.95735 0.96055 0.90274 1.67312 1.25265 0.98700 1.38864 0.93342 0.88809 0.91982 0.92353 0.90904 0.85471 0.90704 0.91288 0.89593 0.75203 0.74242 0.84805 0.89638 0.86692 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.65 6.54 71.98 0.47 1.12 16 3 O -0.39 -8.03 10.11 -148.98 -1.51 -9.53 16 4 C 0.06 1.09 3.30 31.96 0.11 1.20 16 5 H 0.11 1.45 7.50 -2.39 -0.02 1.43 16 6 C 0.03 0.48 7.44 72.67 0.54 1.02 16 7 O -0.38 -8.38 11.52 -148.98 -1.72 -10.10 16 8 C 0.05 1.12 7.50 72.36 0.54 1.66 16 9 C 0.13 3.42 3.12 46.04 0.14 3.57 16 10 H 0.09 2.73 7.61 -2.39 -0.02 2.71 16 11 N -0.72 -19.54 5.06 -452.77 -2.29 -21.82 16 12 C 0.69 26.95 8.52 179.06 1.53 28.48 16 13 O -0.57 -27.86 14.32 -3.98 -0.06 -27.91 16 14 N -0.66 -26.20 5.40 -322.37 -1.74 -27.94 16 15 C 0.35 17.52 7.42 132.76 0.98 18.51 16 16 C -0.27 -13.78 8.66 23.00 0.20 -13.58 16 17 C 0.11 5.98 5.64 -21.11 -0.12 5.86 16 18 C -0.48 -24.71 9.14 23.52 0.22 -24.50 16 19 H 0.08 4.13 7.89 -2.91 -0.02 4.11 16 20 C 0.04 1.79 5.28 85.29 0.45 2.24 16 21 N -0.81 -38.96 10.60 21.84 0.23 -38.73 16 22 Si 0.99 35.39 29.58 68.60 2.03 37.42 16 23 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 24 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 25 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 26 C -0.30 -15.10 9.85 22.60 0.22 -14.88 16 27 C 0.11 5.63 11.10 84.27 0.94 6.57 16 28 N -0.58 -30.84 7.86 -194.27 -1.53 -32.37 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.72 8.11 -2.39 -0.02 0.70 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 2.27 7.93 -2.39 -0.02 2.25 16 38 H 0.41 8.10 8.38 -92.71 -0.78 7.32 16 39 H 0.42 13.33 8.71 -92.71 -0.81 12.52 16 40 H 0.13 6.83 5.89 -2.91 -0.02 6.81 16 41 H 0.29 12.54 8.29 -92.71 -0.77 11.77 16 42 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 43 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -71.54 362.98 -0.15 -71.69 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.53 Total: 43.33 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.96 Total: 15.98 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.32 Total: -120.86 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -3.28 Total: -47.55 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -71.54 -0.15 -71.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.596 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds