Wall clock time and date at job start Tue Mar 31 2020 13:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99491 * 2 1 4 4 C 1.53007 * 109.47290 * 269.99757 * 3 2 1 5 5 H 1.09000 * 109.51948 * 60.13138 * 4 3 2 6 6 C 1.53138 * 109.52588 * 180.33148 * 4 3 2 7 7 O 1.43075 * 109.15198 * 175.21748 * 6 4 3 8 8 C 1.43082 * 113.58993 * 302.04469 * 7 6 4 9 9 C 1.53146 * 109.14766 * 57.95515 * 8 7 6 10 10 O 1.43075 * 109.15227 * 304.68289 * 9 8 7 11 11 C 1.34775 * 119.99714 * 180.02562 * 2 1 3 12 12 O 1.21578 * 119.99512 * 179.97438 * 11 2 1 13 13 N 1.34771 * 120.00495 * 359.97438 * 11 2 1 14 14 C 1.39458 * 120.00261 * 175.50769 * 13 11 2 15 15 C 1.38643 * 119.65056 * 184.54199 * 14 13 11 16 16 C 1.40816 * 118.67324 * 179.75967 * 15 14 13 17 17 C 1.41544 * 120.99816 * 180.25429 * 16 15 14 18 18 H 1.07993 * 120.00131 * 198.38539 * 17 16 15 19 19 C 1.40038 * 119.99768 * 18.39018 * 17 16 15 20 20 N 1.30739 * 119.99720 * 18.13621 * 19 17 16 21 21 Si 1.86801 * 119.99894 * 198.13837 * 19 17 16 22 22 H 1.48496 * 109.47226 * 94.95852 * 21 19 17 23 23 H 1.48496 * 109.47095 * 214.96073 * 21 19 17 24 24 H 1.48500 * 109.47099 * 334.95752 * 21 19 17 25 25 C 1.41166 * 118.00684 * 0.50476 * 16 15 14 26 26 C 1.36590 * 119.12572 * 359.75079 * 25 16 15 27 27 N 1.32071 * 121.25976 * 359.97438 * 26 25 16 28 28 H 1.09006 * 109.47126 * 89.99977 * 1 2 3 29 29 H 1.09002 * 109.47104 * 209.99744 * 1 2 3 30 30 H 1.08995 * 109.47095 * 329.99923 * 1 2 3 31 31 H 1.08999 * 109.46824 * 150.00129 * 3 2 1 32 32 H 1.08993 * 109.47708 * 30.00417 * 3 2 1 33 33 H 1.08999 * 109.52478 * 295.12232 * 6 4 3 34 34 H 1.09005 * 109.52562 * 55.31026 * 6 4 3 35 35 H 1.08999 * 109.52242 * 298.05624 * 8 7 6 36 36 H 1.08995 * 109.57445 * 177.88652 * 8 7 6 37 37 H 1.08999 * 109.51844 * 184.78562 * 9 8 7 38 38 H 1.08992 * 109.52546 * 64.58904 * 9 8 7 39 39 H 0.96999 * 119.99623 * 355.51037 * 13 11 2 40 40 H 1.07994 * 120.65921 * 359.97438 * 15 14 13 41 41 H 0.97007 * 119.99707 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.43453 * 179.77713 * 25 16 15 43 43 H 1.08002 * 119.36902 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5005 1.8432 -1.9565 6 6 3.2253 3.0326 -1.4440 7 8 3.5566 3.3812 -2.7915 8 6 4.3299 2.3847 -3.4671 9 6 3.5570 1.0626 -3.4656 10 8 3.2257 0.7140 -2.1181 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4651 -2.3344 -0.0005 14 6 2.1591 -3.5403 -0.0957 15 6 1.4554 -4.7311 -0.1903 16 6 2.1769 -5.9362 -0.2905 17 6 1.5084 -7.1795 -0.3949 18 1 2.0356 -8.0960 -0.1751 19 6 0.1636 -7.2209 -0.7832 20 7 -0.3757 -6.1918 -1.3827 21 14 -0.8597 -8.7466 -0.4446 22 1 -1.6001 -8.5730 0.8308 23 1 -1.8255 -8.9511 -1.5539 24 1 0.0333 -9.9287 -0.3416 25 6 3.5868 -5.8676 -0.2784 26 6 4.1922 -4.6475 -0.1761 27 7 3.4840 -3.5361 -0.0894 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1499 1.1385 0.5138 32 1 1.6085 2.0284 0.5138 33 1 2.6070 3.8164 -1.0064 34 1 4.1397 2.9207 -0.8612 35 1 5.2814 2.2511 -2.9523 36 1 4.5126 2.6988 -4.4947 37 1 4.1754 0.2788 -3.9031 38 1 2.6428 1.1745 -4.0483 39 1 0.4973 -2.3357 0.0656 40 1 0.3754 -4.7340 -0.1906 41 1 -1.3074 -6.2204 -1.6513 42 1 4.1789 -6.7680 -0.3494 43 1 5.2707 -4.5904 -0.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:09 Heat of formation + Delta-G solvation = -59.382787 kcal Electronic energy + Delta-G solvation = -27531.396645 eV Core-core repulsion = 23577.905499 eV Total energy + Delta-G solvation = -3953.491146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23024 -39.53837 -38.02668 -36.12145 -35.15470 -34.24926 -33.74652 -32.08445 -30.44503 -29.02310 -28.24078 -26.97988 -25.98241 -25.40007 -23.45223 -21.85749 -21.44829 -20.95652 -19.32421 -17.92167 -17.52887 -16.93659 -16.74553 -16.00414 -15.86560 -15.62038 -15.43719 -15.13971 -14.73440 -14.25341 -14.12317 -14.04912 -13.42192 -13.28173 -13.16583 -12.84107 -12.64276 -12.58194 -12.45583 -12.15986 -11.99194 -11.85630 -11.44012 -11.40454 -11.17744 -10.85359 -10.71572 -10.43580 -10.24504 -10.03820 -9.67731 -9.40377 -9.28896 -9.16176 -8.37311 -7.95781 -7.62485 -6.93400 -6.75133 -4.57729 2.75853 2.85643 2.95159 3.01828 3.05780 3.30992 3.57098 3.67584 3.84945 4.01553 4.31763 4.54447 4.71879 4.84096 4.85385 4.95806 5.00655 5.08412 5.16903 5.20579 5.36959 5.44255 5.47435 5.64898 5.66641 5.75586 5.79569 5.87187 6.02508 6.53611 6.70052 6.75159 6.81006 6.89270 6.97414 7.18535 7.20629 7.30008 7.51619 7.57603 7.90984 8.15249 8.43810 8.54032 8.79288 8.79461 9.32732 9.84313 10.05848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.003056 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.169968 B = 9159.442152 C = 9520.879463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.637 5.637 3 C 0.147 3.853 4 C 0.035 3.965 5 H 0.063 0.937 6 C 0.032 3.968 7 O -0.382 6.382 8 C 0.025 3.975 9 C 0.024 3.976 10 O -0.342 6.342 11 C 0.697 3.303 12 O -0.513 6.513 13 N -0.669 5.669 14 C 0.358 3.642 15 C -0.257 4.257 16 C 0.142 3.858 17 C -0.451 4.451 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.289 4.289 26 C 0.121 3.879 27 N -0.553 5.553 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.401 0.599 40 H 0.134 0.866 41 H 0.281 0.719 42 H 0.099 0.901 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 15.441 -0.601 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.378 5.378 3 C 0.022 3.978 4 C -0.025 4.025 5 H 0.081 0.919 6 C -0.045 4.045 7 O -0.301 6.301 8 C -0.052 4.052 9 C -0.054 4.054 10 O -0.261 6.261 11 C 0.397 3.603 12 O -0.382 6.382 13 N -0.319 5.319 14 C 0.132 3.868 15 C -0.283 4.283 16 C 0.133 3.867 17 C -0.482 4.482 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.409 5.409 21 Si 0.736 3.264 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.314 4.314 26 C -0.033 4.033 27 N -0.272 5.272 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.237 0.763 40 H 0.151 0.849 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.733 16.376 -0.648 16.405 hybrid contribution -1.666 -1.475 -0.198 2.234 sum -2.399 14.901 -0.845 15.117 Atomic orbital electron populations 1.21700 0.80555 1.02608 1.01497 1.46984 1.05695 1.04871 1.80234 1.21166 0.98572 0.84687 0.93366 1.23271 0.94451 0.88938 0.95818 0.91878 1.23192 1.00056 0.97040 0.84253 1.88048 1.73292 1.42918 1.25833 1.23269 0.94443 0.89128 0.98373 1.23196 0.99516 0.97278 0.85363 1.88453 1.72298 1.41070 1.24237 1.15911 0.85718 0.79859 0.78764 1.91005 1.10357 1.84534 1.52296 1.42721 1.09492 1.03628 1.76020 1.17987 0.89257 0.83260 0.96295 1.21645 1.00830 0.90264 1.15541 1.17548 0.90571 0.92770 0.85797 1.19619 0.94954 0.93682 1.39948 0.90008 1.25988 0.98394 0.97835 0.91959 1.69794 1.14176 1.30680 1.26290 0.86243 0.79526 0.81742 0.78912 1.19258 1.20215 1.18430 1.21595 0.95411 0.97415 1.16942 1.21454 0.97781 0.87890 0.96137 1.67231 1.05328 1.30464 1.24190 0.93052 0.91490 0.91207 0.88919 0.89304 0.87971 0.91787 0.91996 0.88064 0.87862 0.92772 0.76294 0.84892 0.90826 0.88238 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.29 59.85 0.62 1.47 16 2 N -0.64 -9.45 2.83 -187.35 -0.53 -9.98 16 3 C 0.15 1.79 5.23 -4.04 -0.02 1.77 16 4 C 0.04 0.44 3.12 -26.66 -0.08 0.36 16 5 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 6 C 0.03 0.34 6.34 37.23 0.24 0.57 16 7 O -0.38 -4.58 10.85 -48.80 -0.53 -5.11 16 8 C 0.02 0.27 7.05 37.23 0.26 0.53 16 9 C 0.02 0.31 7.05 37.23 0.26 0.57 16 10 O -0.34 -5.64 9.11 -57.42 -0.52 -6.16 16 11 C 0.70 14.24 7.75 -86.92 -0.67 13.57 16 12 O -0.51 -12.56 13.40 -3.40 -0.05 -12.61 16 13 N -0.67 -14.05 5.27 -15.87 -0.08 -14.13 16 14 C 0.36 9.06 7.42 -154.68 -1.15 7.91 16 15 C -0.26 -6.68 8.69 -38.46 -0.33 -7.02 16 16 C 0.14 3.79 5.66 -106.55 -0.60 3.19 16 17 C -0.45 -11.71 9.13 -37.65 -0.34 -12.06 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 19 C 0.08 1.87 5.22 -17.34 -0.09 1.78 16 20 N -0.78 -19.29 10.66 55.55 0.59 -18.69 16 21 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.29 -7.30 9.85 -39.07 -0.38 -7.69 16 26 C 0.12 3.02 11.10 -18.04 -0.20 2.82 16 27 N -0.55 -14.72 7.85 -12.76 -0.10 -14.82 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 6.30 -51.93 -0.33 0.37 16 30 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 31 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 32 H 0.09 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 7.06 6.39 -40.82 -0.26 6.80 16 40 H 0.13 3.42 5.85 -52.49 -0.31 3.11 16 41 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -34.53 353.98 -9.30 -43.83 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.88 Total: 11.68 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -2.51 Total: 7.78 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.12 Total: -57.62 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -1.10 Total: -23.88 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.53 -9.30 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.552 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds