Wall clock time and date at job start Tue Mar 31 2020 13:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99491 * 2 1 4 4 C 1.53007 * 109.47290 * 269.99757 * 3 2 1 5 5 H 1.09000 * 109.51948 * 60.13138 * 4 3 2 6 6 C 1.53138 * 109.52588 * 180.33148 * 4 3 2 7 7 O 1.43075 * 109.15198 * 175.21748 * 6 4 3 8 8 C 1.43082 * 113.58993 * 302.04469 * 7 6 4 9 9 C 1.53146 * 109.14766 * 57.95515 * 8 7 6 10 10 O 1.43075 * 109.15227 * 304.68289 * 9 8 7 11 11 C 1.34775 * 119.99714 * 180.02562 * 2 1 3 12 12 O 1.21578 * 119.99512 * 179.97438 * 11 2 1 13 13 N 1.34771 * 120.00495 * 359.97438 * 11 2 1 14 14 C 1.39458 * 120.00261 * 175.50769 * 13 11 2 15 15 C 1.38643 * 119.65056 * 184.54199 * 14 13 11 16 16 C 1.40816 * 118.67324 * 179.75967 * 15 14 13 17 17 C 1.41544 * 120.99816 * 180.25429 * 16 15 14 18 18 H 1.07993 * 120.00131 * 198.38539 * 17 16 15 19 19 C 1.40038 * 119.99768 * 18.39018 * 17 16 15 20 20 N 1.30739 * 119.99720 * 18.13621 * 19 17 16 21 21 Si 1.86801 * 119.99894 * 198.13837 * 19 17 16 22 22 H 1.48496 * 109.47226 * 94.95852 * 21 19 17 23 23 H 1.48496 * 109.47095 * 214.96073 * 21 19 17 24 24 H 1.48500 * 109.47099 * 334.95752 * 21 19 17 25 25 C 1.41166 * 118.00684 * 0.50476 * 16 15 14 26 26 C 1.36590 * 119.12572 * 359.75079 * 25 16 15 27 27 N 1.32071 * 121.25976 * 359.97438 * 26 25 16 28 28 H 1.09006 * 109.47126 * 89.99977 * 1 2 3 29 29 H 1.09002 * 109.47104 * 209.99744 * 1 2 3 30 30 H 1.08995 * 109.47095 * 329.99923 * 1 2 3 31 31 H 1.08999 * 109.46824 * 150.00129 * 3 2 1 32 32 H 1.08993 * 109.47708 * 30.00417 * 3 2 1 33 33 H 1.08999 * 109.52478 * 295.12232 * 6 4 3 34 34 H 1.09005 * 109.52562 * 55.31026 * 6 4 3 35 35 H 1.08999 * 109.52242 * 298.05624 * 8 7 6 36 36 H 1.08995 * 109.57445 * 177.88652 * 8 7 6 37 37 H 1.08999 * 109.51844 * 184.78562 * 9 8 7 38 38 H 1.08992 * 109.52546 * 64.58904 * 9 8 7 39 39 H 0.96999 * 119.99623 * 355.51037 * 13 11 2 40 40 H 1.07994 * 120.65921 * 359.97438 * 15 14 13 41 41 H 0.97007 * 119.99707 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.43453 * 179.77713 * 25 16 15 43 43 H 1.08002 * 119.36902 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5005 1.8432 -1.9565 6 6 3.2253 3.0326 -1.4440 7 8 3.5566 3.3812 -2.7915 8 6 4.3299 2.3847 -3.4671 9 6 3.5570 1.0626 -3.4656 10 8 3.2257 0.7140 -2.1181 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4651 -2.3344 -0.0005 14 6 2.1591 -3.5403 -0.0957 15 6 1.4554 -4.7311 -0.1903 16 6 2.1769 -5.9362 -0.2905 17 6 1.5084 -7.1795 -0.3949 18 1 2.0356 -8.0960 -0.1751 19 6 0.1636 -7.2209 -0.7832 20 7 -0.3757 -6.1918 -1.3827 21 14 -0.8597 -8.7466 -0.4446 22 1 -1.6001 -8.5730 0.8308 23 1 -1.8255 -8.9511 -1.5539 24 1 0.0333 -9.9287 -0.3416 25 6 3.5868 -5.8676 -0.2784 26 6 4.1922 -4.6475 -0.1761 27 7 3.4840 -3.5361 -0.0894 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1499 1.1385 0.5138 32 1 1.6085 2.0284 0.5138 33 1 2.6070 3.8164 -1.0064 34 1 4.1397 2.9207 -0.8612 35 1 5.2814 2.2511 -2.9523 36 1 4.5126 2.6988 -4.4947 37 1 4.1754 0.2788 -3.9031 38 1 2.6428 1.1745 -4.0483 39 1 0.4973 -2.3357 0.0656 40 1 0.3754 -4.7340 -0.1906 41 1 -1.3074 -6.2204 -1.6513 42 1 4.1789 -6.7680 -0.3494 43 1 5.2707 -4.5904 -0.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871734350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:08 Heat of formation + Delta-G solvation = -82.233369 kcal Electronic energy + Delta-G solvation = -27532.387520 eV Core-core repulsion = 23577.905499 eV Total energy + Delta-G solvation = -3954.482022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55502 -40.79481 -39.76318 -37.20738 -36.44274 -36.04061 -35.50512 -33.12776 -32.38144 -30.47489 -29.58260 -27.92738 -27.91831 -26.52596 -24.53997 -23.77548 -23.00141 -22.05375 -20.91750 -19.50730 -19.17475 -18.00767 -17.72771 -17.43891 -17.16948 -16.89561 -16.70234 -16.38236 -16.01946 -16.00120 -15.83438 -15.48733 -14.72600 -14.67404 -14.51607 -14.35644 -14.32237 -13.79632 -13.53180 -13.39942 -13.14894 -12.91516 -12.89462 -12.76965 -12.63795 -12.37214 -11.98234 -11.89493 -11.66500 -11.48514 -11.37301 -11.13749 -11.05793 -10.16912 -9.94776 -9.58706 -9.54780 -8.79451 -8.60923 -6.55286 0.88848 1.02860 1.41569 1.55285 1.60210 1.62956 2.20303 2.37607 2.71028 2.75722 2.85942 2.98472 3.62230 3.81505 3.89974 3.96915 4.05650 4.10192 4.11234 4.26296 4.32980 4.37719 4.52799 4.60022 4.62911 4.72254 4.74636 4.84110 4.84875 4.91307 4.93490 4.97553 5.12328 5.26572 5.52851 5.59526 5.71526 5.83812 5.94593 5.97328 6.20646 6.26975 6.58637 6.82003 6.84239 6.95340 7.70501 7.98229 8.24758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.003056 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.169968 B = 9159.442152 C = 9520.879463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.628 5.628 3 C 0.143 3.857 4 C 0.033 3.967 5 H 0.071 0.929 6 C 0.035 3.965 7 O -0.391 6.391 8 C 0.030 3.970 9 C 0.019 3.981 10 O -0.388 6.388 11 C 0.690 3.310 12 O -0.561 6.561 13 N -0.665 5.665 14 C 0.354 3.646 15 C -0.275 4.275 16 C 0.113 3.887 17 C -0.479 4.479 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.805 5.805 21 Si 0.990 3.010 22 H -0.260 1.260 23 H -0.266 1.266 24 H -0.259 1.259 25 C -0.304 4.304 26 C 0.114 3.886 27 N -0.580 5.580 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.131 0.869 41 H 0.293 0.707 42 H 0.114 0.886 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 16.497 -0.447 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.367 5.367 3 C 0.019 3.981 4 C -0.027 4.027 5 H 0.089 0.911 6 C -0.042 4.042 7 O -0.310 6.310 8 C -0.046 4.046 9 C -0.058 4.058 10 O -0.307 6.307 11 C 0.391 3.609 12 O -0.434 6.434 13 N -0.316 5.316 14 C 0.127 3.873 15 C -0.301 4.301 16 C 0.104 3.896 17 C -0.509 4.509 18 H 0.102 0.898 19 C -0.179 4.179 20 N -0.430 5.430 21 Si 0.810 3.190 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.328 4.328 26 C -0.039 4.039 27 N -0.300 5.300 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.846 17.502 -0.499 17.739 hybrid contribution -1.068 -1.741 -0.281 2.061 sum -3.913 15.761 -0.780 16.259 Atomic orbital electron populations 1.22008 0.77649 1.04761 1.02525 1.47004 1.07503 1.03777 1.78430 1.21498 0.98304 0.84540 0.93724 1.23441 0.94641 0.89163 0.95407 0.91125 1.23303 1.00195 0.96961 0.83738 1.88034 1.73333 1.43092 1.26554 1.23281 0.93640 0.87993 0.99716 1.23299 0.99946 0.98249 0.84308 1.88400 1.73189 1.43398 1.25723 1.16169 0.85420 0.80886 0.78420 1.90962 1.12563 1.85470 1.54388 1.42650 1.10088 1.02972 1.75844 1.18223 0.89169 0.84638 0.95277 1.21630 1.00660 0.90621 1.17150 1.17986 0.91560 0.93657 0.86364 1.19912 0.96484 0.93489 1.41050 0.89820 1.26880 0.98767 1.01295 0.90928 1.69814 1.15136 1.32453 1.25630 0.85074 0.77599 0.77225 0.79114 1.18452 1.19004 1.18259 1.21772 0.95271 0.98140 1.17588 1.21876 0.98996 0.87660 0.95352 1.67353 1.06093 1.31129 1.25457 0.92541 0.91577 0.86868 0.91449 0.83989 0.84412 0.92338 0.92483 0.85554 0.88640 0.92328 0.74713 0.85112 0.89588 0.86829 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.29 127.77 1.31 2.66 16 2 N -0.63 -17.85 2.83 -864.91 -2.45 -20.30 16 3 C 0.14 3.23 5.23 86.38 0.45 3.68 16 4 C 0.03 0.77 3.12 30.64 0.10 0.87 16 5 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 6 C 0.04 0.66 6.34 72.03 0.46 1.12 16 7 O -0.39 -8.67 10.85 -136.01 -1.48 -10.14 16 8 C 0.03 0.64 7.05 72.03 0.51 1.15 16 9 C 0.02 0.50 7.05 72.03 0.51 1.00 16 10 O -0.39 -12.95 9.11 -127.77 -1.16 -14.12 16 11 C 0.69 28.59 7.75 179.06 1.39 29.98 16 12 O -0.56 -28.41 13.40 4.35 0.06 -28.35 16 13 N -0.66 -28.43 5.27 -322.38 -1.70 -30.13 16 14 C 0.35 18.47 7.42 132.76 0.99 19.46 16 15 C -0.27 -14.71 8.69 23.00 0.20 -14.51 16 16 C 0.11 6.20 5.66 -21.11 -0.12 6.08 16 17 C -0.48 -25.21 9.13 23.52 0.21 -25.00 16 18 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 19 C 0.04 1.87 5.22 85.29 0.45 2.32 16 20 N -0.81 -39.47 10.66 21.84 0.23 -39.24 16 21 Si 0.99 35.84 29.60 68.60 2.03 37.87 16 22 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 23 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 25 C -0.30 -15.74 9.85 22.60 0.22 -15.51 16 26 C 0.11 5.86 11.10 84.27 0.94 6.80 16 27 N -0.58 -31.90 7.85 -194.27 -1.53 -33.42 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.25 6.30 -2.39 -0.02 1.24 16 30 H 0.11 1.16 7.89 -2.39 -0.02 1.15 16 31 H 0.07 1.91 7.42 -2.39 -0.02 1.89 16 32 H 0.14 1.66 7.89 -2.39 -0.02 1.64 16 33 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.41 14.69 6.39 -92.71 -0.59 14.10 16 40 H 0.13 6.90 5.85 -2.91 -0.02 6.89 16 41 H 0.29 12.69 8.29 -92.70 -0.77 11.93 16 42 H 0.11 5.37 8.06 -2.91 -0.02 5.34 16 43 H 0.14 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -78.04 353.98 2.06 -75.98 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.45 Total: 41.75 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 7.60 Total: 20.09 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.44 Total: -123.09 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.58 Total: -52.61 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -78.04 2.06 -75.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds