Wall clock time and date at job start Tue Mar 31 2020 13:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 117.00373 * 2 1 4 4 O 1.21507 * 119.99598 * 359.97438 * 3 2 1 5 5 N 1.34768 * 119.99908 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00181 * 179.97438 * 5 3 2 7 7 N 1.40100 * 120.00229 * 359.97438 * 5 3 2 8 8 C 1.34784 * 119.99901 * 255.00015 * 7 5 3 9 9 O 1.21579 * 120.00114 * 179.72486 * 8 7 5 10 10 N 1.34777 * 119.99908 * 359.72213 * 8 7 5 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46776 * 35.00022 * 11 10 8 13 13 C 1.52998 * 109.47246 * 155.00083 * 11 10 8 14 14 C 1.50697 * 109.47439 * 295.00322 * 13 11 10 15 15 H 1.08007 * 119.99628 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00471 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99612 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00481 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47052 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47415 * 119.99585 * 18 16 14 21 21 H 1.48503 * 109.47322 * 240.00031 * 18 16 14 22 22 C 1.50696 * 109.47365 * 275.00798 * 11 10 8 23 23 C 1.38236 * 119.99802 * 319.72135 * 22 11 10 24 24 C 1.38242 * 120.00141 * 179.79215 * 23 22 11 25 25 C 1.38232 * 119.99627 * 0.44159 * 24 23 22 26 26 C 1.38232 * 119.99889 * 359.81024 * 25 24 23 27 27 C 1.38225 * 120.00662 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47060 * 59.99885 * 1 2 3 29 29 H 1.08996 * 109.47593 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47051 * 300.00097 * 1 2 3 31 31 H 1.09004 * 109.46912 * 270.00396 * 6 5 3 32 32 H 1.09004 * 109.46998 * 29.99477 * 6 5 3 33 33 H 1.08994 * 109.47893 * 149.99825 * 6 5 3 34 34 H 0.97000 * 120.00702 * 74.72407 * 7 5 3 35 35 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47261 * 55.00563 * 13 11 10 37 37 H 1.09000 * 109.47285 * 175.00317 * 13 11 10 38 38 H 0.96995 * 119.99952 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00085 * 359.97438 * 23 22 11 40 40 H 1.07997 * 119.99779 * 180.27319 * 24 23 22 41 41 H 1.07996 * 119.99638 * 179.83667 * 25 24 23 42 42 H 1.08007 * 119.99514 * 180.02562 * 26 25 24 43 43 H 1.07993 * 120.00593 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2700 -0.0005 6 6 4.0744 2.5753 -0.0011 7 7 4.1721 0.0950 -0.0005 8 6 4.7929 -0.3054 1.1268 9 8 5.4510 -1.3277 1.1282 10 7 4.6843 0.4276 2.2526 11 6 5.3586 -0.0078 3.4782 12 1 6.3065 -0.4813 3.2226 13 6 5.6192 1.2041 4.3750 14 6 6.5907 2.1333 3.6941 15 1 6.9833 1.8842 2.7192 16 6 6.9791 3.3010 4.3159 17 7 6.5013 3.6040 5.5032 18 14 8.1827 4.4532 3.4716 19 1 8.5676 3.8877 2.1535 20 1 7.5435 5.7789 3.2743 21 1 9.3945 4.6086 4.3159 22 6 4.4850 -0.9948 4.2086 23 6 3.1197 -0.7899 4.2787 24 6 2.3178 -1.6975 4.9451 25 6 2.8823 -2.8053 5.5492 26 6 4.2481 -3.0075 5.4836 27 6 5.0495 -2.1023 4.8134 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.2389 2.8988 -1.0289 32 1 3.4466 3.3033 0.5127 33 1 5.0325 2.4952 0.5124 34 1 4.2504 -0.4326 -0.8107 35 1 4.1590 1.2431 2.2517 36 1 4.6816 1.7290 4.5579 37 1 6.0397 0.8703 5.3236 38 1 6.7742 4.4256 5.9405 39 1 2.6792 0.0779 3.8103 40 1 1.2506 -1.5396 4.9960 41 1 2.2561 -3.5130 6.0721 42 1 4.6891 -3.8733 5.9553 43 1 6.1166 -2.2601 4.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875408289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:57 Heat of formation + Delta-G solvation = -44.141866 kcal Electronic energy + Delta-G solvation = -28101.960392 eV Core-core repulsion = 24149.130142 eV Total energy + Delta-G solvation = -3952.830250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81926 -39.75672 -38.63899 -37.04062 -36.01502 -35.25966 -32.73762 -31.57934 -30.70356 -30.38863 -28.76453 -28.44466 -26.21125 -24.92152 -22.32306 -22.09005 -21.88440 -20.88803 -19.86617 -19.22135 -18.01958 -17.23272 -16.76236 -16.45740 -16.19106 -16.00873 -15.25604 -14.85221 -14.61002 -14.49797 -14.27049 -14.07946 -14.05488 -13.48682 -13.03066 -12.90113 -12.79154 -12.55341 -12.34180 -12.24567 -12.12282 -11.57945 -11.15207 -11.00506 -10.93567 -10.91107 -10.76587 -10.62586 -10.52352 -10.16714 -9.81496 -9.66178 -9.32324 -9.04820 -8.55491 -8.48035 -8.45056 -8.18424 -6.11798 -4.15635 1.54394 1.78949 1.81933 2.57039 2.76161 3.23465 3.32813 3.35304 3.44952 3.80169 4.25374 4.36927 4.94425 4.99177 5.07240 5.24964 5.26864 5.28218 5.34484 5.37421 5.39389 5.41786 5.54858 5.79067 5.91503 5.94436 6.01163 6.10075 6.32845 6.37614 6.45848 6.55895 6.84143 6.85747 6.86581 6.97056 7.09014 7.25117 7.41550 7.47847 7.62157 7.84482 7.96287 8.22434 8.43731 8.87126 8.90230 9.49435 10.98768 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.006084 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.458684 B = 4601.444469 C = 6813.104426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.360 6.360 3 C 0.654 3.346 4 O -0.558 6.558 5 N -0.397 5.397 6 C 0.095 3.905 7 N -0.531 5.531 8 C 0.713 3.287 9 O -0.578 6.578 10 N -0.708 5.708 11 C 0.199 3.801 12 H 0.089 0.911 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.425 0.575 35 H 0.399 0.601 36 H 0.024 0.976 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 -7.652 -8.212 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.273 6.273 3 C 0.409 3.591 4 O -0.444 6.444 5 N -0.232 5.232 6 C -0.046 4.046 7 N -0.291 5.291 8 C 0.413 3.587 9 O -0.453 6.453 10 N -0.361 5.361 11 C 0.094 3.906 12 H 0.107 0.893 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.269 0.731 35 H 0.234 0.766 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.877 -7.877 -7.873 14.886 hybrid contribution 0.245 0.990 -0.714 1.245 sum -9.632 -6.887 -8.587 14.627 Atomic orbital electron populations 1.23238 0.74413 1.03612 1.02726 1.86346 1.24042 1.30430 1.86480 1.18181 0.82188 0.82608 0.76159 1.91050 1.62524 1.35054 1.55722 1.45881 0.99281 1.00313 1.77760 1.22203 0.99237 0.79771 1.03355 1.44670 1.52143 1.18722 1.13515 1.16054 0.79518 0.83099 0.80077 1.90972 1.45691 1.25610 1.82998 1.45225 1.54446 1.27312 1.09087 1.20212 0.92599 0.95315 0.82436 0.89265 1.19409 0.97667 0.89953 0.94404 1.21139 1.26144 1.04627 1.03885 0.92325 1.24989 0.96300 0.97967 0.94846 1.69966 1.43873 1.24852 1.14196 0.86565 0.81144 0.80746 0.79732 1.19703 1.20992 1.20992 1.20567 0.94510 0.95371 0.97032 1.20862 0.93462 0.98829 0.99105 1.21020 0.99225 0.95182 0.98848 1.20984 0.95116 0.98115 1.00987 1.21033 0.93869 0.99285 0.99913 1.21005 0.99937 0.93852 0.97696 0.91868 0.87929 0.91648 0.91480 0.88409 0.88601 0.73072 0.76640 0.95811 0.94503 0.92882 0.86997 0.86846 0.86859 0.86591 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.56 101.05 1.07 1.58 16 2 O -0.36 -4.70 10.17 -40.32 -0.41 -5.11 16 3 C 0.65 9.37 8.53 54.05 0.46 9.83 16 4 O -0.56 -8.97 15.71 -19.28 -0.30 -9.28 16 5 N -0.40 -5.34 2.71 -72.13 -0.20 -5.54 16 6 C 0.09 1.16 9.83 59.85 0.59 1.75 16 7 N -0.53 -7.47 5.54 27.63 0.15 -7.32 16 8 C 0.71 12.65 8.50 -86.91 -0.74 11.92 16 9 O -0.58 -12.03 16.84 5.30 0.09 -11.94 16 10 N -0.71 -12.91 3.86 -59.82 -0.23 -13.14 16 11 C 0.20 4.02 2.11 -69.09 -0.15 3.87 16 12 H 0.09 1.94 7.44 -51.93 -0.39 1.55 16 13 C 0.02 0.54 4.49 -27.89 -0.13 0.42 16 14 C -0.52 -13.28 8.84 -34.44 -0.30 -13.58 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 18 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.07 -1.37 4.91 -104.62 -0.51 -1.89 16 23 C -0.10 -1.81 9.32 -39.58 -0.37 -2.18 16 24 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.13 -1.92 10.05 -39.59 -0.40 -2.31 16 26 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 27 C -0.11 -1.84 9.67 -39.59 -0.38 -2.23 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.10 1.29 7.87 -51.93 -0.41 0.88 16 34 H 0.42 5.12 8.93 -182.60 -1.63 3.49 16 35 H 0.40 7.10 6.86 -40.82 -0.28 6.82 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.11 1.92 7.73 -52.49 -0.41 1.51 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -32.03 374.71 -8.55 -40.59 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.26 Total: 10.89 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.75 Total: 4.16 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.46 Total: -50.32 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.62 Total: -26.32 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.03 -8.55 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875408289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.556 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds