Wall clock time and date at job start Tue Mar 31 2020 13:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 117.00373 * 2 1 4 4 O 1.21507 * 119.99598 * 359.97438 * 3 2 1 5 5 N 1.34768 * 119.99908 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00181 * 179.97438 * 5 3 2 7 7 N 1.40100 * 120.00229 * 359.97438 * 5 3 2 8 8 C 1.34784 * 119.99901 * 255.00015 * 7 5 3 9 9 O 1.21579 * 120.00114 * 179.72486 * 8 7 5 10 10 N 1.34777 * 119.99908 * 359.72213 * 8 7 5 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46776 * 35.00022 * 11 10 8 13 13 C 1.52998 * 109.47246 * 155.00083 * 11 10 8 14 14 C 1.50697 * 109.47439 * 295.00322 * 13 11 10 15 15 H 1.08007 * 119.99628 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00471 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99612 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00481 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47052 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47415 * 119.99585 * 18 16 14 21 21 H 1.48503 * 109.47322 * 240.00031 * 18 16 14 22 22 C 1.50696 * 109.47365 * 275.00798 * 11 10 8 23 23 C 1.38236 * 119.99802 * 319.72135 * 22 11 10 24 24 C 1.38242 * 120.00141 * 179.79215 * 23 22 11 25 25 C 1.38232 * 119.99627 * 0.44159 * 24 23 22 26 26 C 1.38232 * 119.99889 * 359.81024 * 25 24 23 27 27 C 1.38225 * 120.00662 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47060 * 59.99885 * 1 2 3 29 29 H 1.08996 * 109.47593 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47051 * 300.00097 * 1 2 3 31 31 H 1.09004 * 109.46912 * 270.00396 * 6 5 3 32 32 H 1.09004 * 109.46998 * 29.99477 * 6 5 3 33 33 H 1.08994 * 109.47893 * 149.99825 * 6 5 3 34 34 H 0.97000 * 120.00702 * 74.72407 * 7 5 3 35 35 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47261 * 55.00563 * 13 11 10 37 37 H 1.09000 * 109.47285 * 175.00317 * 13 11 10 38 38 H 0.96995 * 119.99952 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00085 * 359.97438 * 23 22 11 40 40 H 1.07997 * 119.99779 * 180.27319 * 24 23 22 41 41 H 1.07996 * 119.99638 * 179.83667 * 25 24 23 42 42 H 1.08007 * 119.99514 * 180.02562 * 26 25 24 43 43 H 1.07993 * 120.00593 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2700 -0.0005 6 6 4.0744 2.5753 -0.0011 7 7 4.1721 0.0950 -0.0005 8 6 4.7929 -0.3054 1.1268 9 8 5.4510 -1.3277 1.1282 10 7 4.6843 0.4276 2.2526 11 6 5.3586 -0.0078 3.4782 12 1 6.3065 -0.4813 3.2226 13 6 5.6192 1.2041 4.3750 14 6 6.5907 2.1333 3.6941 15 1 6.9833 1.8842 2.7192 16 6 6.9791 3.3010 4.3159 17 7 6.5013 3.6040 5.5032 18 14 8.1827 4.4532 3.4716 19 1 8.5676 3.8877 2.1535 20 1 7.5435 5.7789 3.2743 21 1 9.3945 4.6086 4.3159 22 6 4.4850 -0.9948 4.2086 23 6 3.1197 -0.7899 4.2787 24 6 2.3178 -1.6975 4.9451 25 6 2.8823 -2.8053 5.5492 26 6 4.2481 -3.0075 5.4836 27 6 5.0495 -2.1023 4.8134 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.2389 2.8988 -1.0289 32 1 3.4466 3.3033 0.5127 33 1 5.0325 2.4952 0.5124 34 1 4.2504 -0.4326 -0.8107 35 1 4.1590 1.2431 2.2517 36 1 4.6816 1.7290 4.5579 37 1 6.0397 0.8703 5.3236 38 1 6.7742 4.4256 5.9405 39 1 2.6792 0.0779 3.8103 40 1 1.2506 -1.5396 4.9960 41 1 2.2561 -3.5130 6.0721 42 1 4.6891 -3.8733 5.9553 43 1 6.1166 -2.2601 4.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875408289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:56 Heat of formation + Delta-G solvation = -63.799964 kcal Electronic energy + Delta-G solvation = -28102.812831 eV Core-core repulsion = 24149.130142 eV Total energy + Delta-G solvation = -3953.682689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00094 -41.09910 -39.92092 -38.15461 -37.23204 -36.84279 -34.68837 -32.91255 -31.99046 -31.64706 -30.49559 -29.37056 -27.21972 -26.62963 -23.82588 -23.54344 -23.13762 -22.15167 -21.25326 -20.42549 -19.38492 -18.56065 -18.29705 -17.65099 -17.58748 -17.25250 -16.65688 -16.48827 -16.15549 -15.75554 -15.63014 -15.13784 -15.02670 -14.95251 -14.48851 -14.19401 -14.11479 -13.87859 -13.66855 -13.44066 -13.42112 -13.05443 -12.91463 -12.61073 -12.47533 -12.16572 -12.11455 -11.89250 -11.86288 -11.67954 -11.58896 -11.29941 -10.95049 -10.57622 -10.26864 -9.96225 -9.74875 -9.52176 -8.17569 -6.27848 0.42486 0.52742 0.56626 1.41211 1.44496 1.44591 1.55169 1.63338 2.00728 2.42271 2.47427 2.98768 3.17408 3.81817 3.99408 4.03055 4.20620 4.28030 4.31802 4.32239 4.34890 4.44781 4.46255 4.64792 4.65901 4.75206 4.78181 4.79554 4.98056 5.12638 5.19013 5.23335 5.28852 5.43890 5.58681 5.61995 5.64802 5.73289 5.80145 5.85313 6.06512 6.16999 6.21784 6.74063 6.84894 7.13249 7.41273 7.47117 8.93528 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.006084 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.458684 B = 4601.444469 C = 6813.104426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.369 6.369 3 C 0.654 3.346 4 O -0.577 6.577 5 N -0.395 5.395 6 C 0.093 3.907 7 N -0.514 5.514 8 C 0.715 3.285 9 O -0.609 6.609 10 N -0.705 5.705 11 C 0.215 3.785 12 H 0.068 0.932 13 C 0.037 3.963 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.956 3.044 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.285 1.285 22 C -0.100 4.100 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.438 0.562 35 H 0.400 0.600 36 H 0.005 0.995 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -8.584 -8.972 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.281 6.281 3 C 0.409 3.591 4 O -0.464 6.464 5 N -0.230 5.230 6 C -0.047 4.047 7 N -0.273 5.273 8 C 0.415 3.585 9 O -0.486 6.486 10 N -0.358 5.358 11 C 0.109 3.891 12 H 0.086 0.914 13 C 0.000 4.000 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.567 5.567 18 Si 0.781 3.219 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.212 1.212 22 C -0.102 4.102 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.285 0.715 35 H 0.235 0.765 36 H 0.023 0.977 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.019 -8.814 -8.677 16.565 hybrid contribution 0.500 1.211 -0.444 1.383 sum -10.519 -7.603 -9.121 15.863 Atomic orbital electron populations 1.23570 0.72414 1.05706 1.02979 1.86352 1.26053 1.29608 1.86122 1.18250 0.82199 0.82809 0.75819 1.91035 1.62877 1.35820 1.56718 1.45974 0.99232 1.00183 1.77602 1.22288 0.98322 0.79124 1.04936 1.44328 1.51216 1.19031 1.12756 1.16041 0.79427 0.82564 0.80459 1.90948 1.47140 1.26875 1.83679 1.45033 1.54311 1.27489 1.08962 1.19724 0.92646 0.94012 0.82680 0.91398 1.19142 0.96084 0.90965 0.93812 1.21392 1.26095 1.04911 1.03790 0.92352 1.25783 0.97987 0.99619 0.95375 1.70087 1.45421 1.25516 1.15717 0.85533 0.78655 0.78783 0.78890 1.18706 1.20268 1.21164 1.20477 0.95072 0.96023 0.98581 1.20931 0.93168 0.99559 1.00184 1.21383 1.00511 0.94682 0.97723 1.21454 0.95168 0.98066 0.99785 1.21405 0.94298 0.99385 0.98859 1.21184 1.00395 0.94446 0.98649 0.91079 0.84954 0.91987 0.88726 0.88709 0.89873 0.71518 0.76472 0.97651 0.97383 0.92826 0.87642 0.84000 0.83050 0.83592 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -9.13 10.17 -55.49 -0.56 -9.70 16 3 C 0.65 18.18 8.53 129.79 1.11 19.29 16 4 O -0.58 -18.15 15.71 19.82 0.31 -17.84 16 5 N -0.39 -10.34 2.71 -612.52 -1.66 -12.00 16 6 C 0.09 2.22 9.83 127.77 1.26 3.47 16 7 N -0.51 -14.15 5.54 -184.74 -1.02 -15.17 16 8 C 0.72 25.61 8.50 179.05 1.52 27.14 16 9 O -0.61 -25.69 16.84 -3.96 -0.07 -25.75 16 10 N -0.71 -26.46 3.86 -461.43 -1.78 -28.24 16 11 C 0.21 9.08 2.11 44.24 0.09 9.17 16 12 H 0.07 3.12 7.44 -2.39 -0.02 3.11 16 13 C 0.04 1.86 4.49 29.85 0.13 1.99 16 14 C -0.52 -27.51 8.84 25.60 0.23 -27.29 16 15 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 16 C 0.01 0.59 5.46 84.65 0.46 1.05 16 17 N -0.93 -53.45 13.29 21.45 0.28 -53.17 16 18 Si 0.96 42.12 29.54 68.60 2.03 44.14 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.10 -3.84 4.91 -19.87 -0.10 -3.94 16 23 C -0.12 -4.17 9.32 22.27 0.21 -3.96 16 24 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 25 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 26 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 27 C -0.13 -4.48 9.67 22.27 0.22 -4.26 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.34 7.42 -2.38 -0.02 2.32 16 33 H 0.08 2.21 7.87 -2.39 -0.02 2.19 16 34 H 0.44 10.07 8.93 -213.32 -1.90 8.17 16 35 H 0.40 14.69 6.86 -92.71 -0.64 14.05 16 36 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.11 3.68 7.73 -2.91 -0.02 3.66 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 43 H 0.12 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -70.11 374.71 3.02 -67.09 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -1.50 Total: 35.48 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.00 Total: 15.14 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.18 Total: -108.58 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.32 Total: -53.29 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -70.11 3.02 -67.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875408289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.294 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds