Wall clock time and date at job start Tue Mar 31 2020 13:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99776 * 2 1 4 4 N 1.46490 * 109.47088 * 125.00313 * 3 2 1 5 5 C 1.46503 * 120.00406 * 269.72434 * 4 3 2 6 6 C 1.50692 * 109.47243 * 270.28012 * 5 4 3 7 7 H 1.08002 * 120.00510 * 359.97438 * 6 5 4 8 8 C 1.37887 * 120.00153 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47210 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47061 * 119.99513 * 10 8 6 13 13 H 1.48493 * 109.47461 * 239.99852 * 10 8 6 14 14 C 1.34782 * 119.99874 * 90.00048 * 4 3 2 15 15 O 1.21608 * 119.99914 * 179.72305 * 14 4 3 16 16 N 1.34770 * 120.00179 * 359.72851 * 14 4 3 17 17 C 1.40430 * 120.00436 * 174.92449 * 16 14 4 18 18 C 1.39498 * 120.52268 * 273.62623 * 17 16 14 19 19 O 1.35835 * 120.83702 * 359.95335 * 18 17 16 20 20 C 1.42901 * 117.00241 * 179.97438 * 19 18 17 21 21 C 1.39258 * 118.32586 * 179.97438 * 18 17 16 22 22 C 1.37932 * 119.27536 * 0.02562 * 21 18 17 23 23 N 1.32040 * 121.00419 * 359.97438 * 22 21 18 24 24 C 1.32295 * 121.82859 * 359.72564 * 23 22 21 25 25 O 1.35773 * 119.68983 * 180.26838 * 24 23 22 26 26 C 1.42895 * 117.00369 * 0.27114 * 25 24 23 27 27 H 1.07992 * 120.00498 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99752 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00113 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46762 * 5.00184 * 3 2 1 31 31 H 1.09000 * 109.47168 * 245.00490 * 3 2 1 32 32 H 1.09000 * 109.46577 * 30.27584 * 5 4 3 33 33 H 1.08996 * 109.47390 * 150.27468 * 5 4 3 34 34 H 0.97004 * 119.99955 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99785 * 354.92113 * 16 14 4 36 36 H 1.08994 * 109.47326 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46796 * 300.00158 * 20 19 18 38 38 H 1.08999 * 109.46872 * 60.00254 * 20 19 18 39 39 H 1.08000 * 120.35718 * 180.02562 * 21 18 17 40 40 H 1.07994 * 119.49848 * 179.97438 * 22 21 18 41 41 H 1.09002 * 109.46600 * 300.00093 * 26 25 24 42 42 H 1.09002 * 109.47072 * 59.99712 * 26 25 24 43 43 H 1.08999 * 109.47192 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5608 1.8705 2.4232 6 6 2.8453 3.3495 2.4716 7 1 3.3033 3.8394 1.6251 8 6 2.5211 4.0775 3.5969 9 7 1.9630 3.4810 4.6276 10 14 2.8744 5.9106 3.6572 11 1 3.5018 6.3362 2.3803 12 1 1.6040 6.6533 3.8567 13 1 3.7989 6.1998 4.7828 14 6 4.2497 0.8662 0.9822 15 8 5.0235 0.8931 1.9199 16 7 4.6481 0.3709 -0.2062 17 6 5.9851 -0.0154 -0.3933 18 6 6.9437 0.9180 -0.7882 19 8 6.6053 2.2163 -1.0005 20 6 7.6520 3.1022 -1.4023 21 6 8.2561 0.4852 -0.9598 22 6 8.5637 -0.8407 -0.7364 23 7 7.6342 -1.7010 -0.3631 24 6 6.3761 -1.3341 -0.1822 25 8 5.4567 -2.2540 0.2074 26 6 5.9206 -3.5907 0.4071 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4910 1.7021 2.5468 33 1 3.1025 1.3697 3.2255 34 1 1.7351 3.9931 5.4193 35 1 4.0112 0.2812 -0.9323 36 1 7.2474 4.1053 -1.5370 37 1 8.4253 3.1229 -0.6344 38 1 8.0819 2.7543 -2.3416 39 1 9.0246 1.1801 -1.2644 40 1 9.5803 -1.1804 -0.8688 41 1 6.3407 -3.9723 -0.5235 42 1 6.6877 -3.5971 1.1816 43 1 5.0876 -4.2221 0.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881084023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:04 Heat of formation + Delta-G solvation = -22.710178 kcal Electronic energy + Delta-G solvation = -27943.395640 eV Core-core repulsion = 23991.494738 eV Total energy + Delta-G solvation = -3951.900902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04259 -39.13778 -39.01986 -37.19871 -35.65420 -34.45421 -33.01285 -31.97917 -30.91647 -29.79168 -27.94382 -27.34770 -26.69377 -25.36414 -23.67829 -22.49266 -22.23242 -19.95582 -19.31195 -18.89309 -17.72213 -17.55026 -16.77635 -16.41605 -16.34096 -15.99411 -15.57854 -15.16086 -15.00148 -14.55665 -14.32331 -14.23635 -13.82874 -13.73550 -13.28450 -13.03187 -12.82980 -12.68911 -12.14039 -11.86061 -11.69021 -11.64336 -11.48910 -11.19999 -11.09833 -10.99836 -10.80304 -10.52613 -10.10840 -10.03887 -9.54293 -9.20847 -9.11359 -8.85437 -8.74723 -8.42138 -8.34873 -7.53213 -5.95211 -3.98720 1.07503 1.33174 2.52275 2.71976 3.34284 3.36083 3.41603 3.46440 3.54250 3.76218 4.07262 4.35429 4.48218 4.62267 4.69928 4.98960 5.00971 5.08308 5.19815 5.26987 5.32571 5.34525 5.38664 5.41807 5.50090 5.58412 5.68781 5.75159 5.89037 6.07426 6.09364 6.27304 6.83978 6.85469 6.90412 7.04637 7.17679 7.41475 7.49229 7.68002 7.82576 7.85041 8.05362 8.35149 8.80403 9.03529 9.49142 9.67444 11.12793 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004676 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.586030 B = 5986.456906 C = 7267.341276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.139 3.861 4 N -0.605 5.605 5 C 0.263 3.737 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.711 3.289 15 O -0.577 6.577 16 N -0.689 5.689 17 C 0.064 3.936 18 C 0.206 3.794 19 O -0.291 6.291 20 C 0.026 3.974 21 C -0.294 4.294 22 C 0.172 3.828 23 N -0.559 5.559 24 C 0.359 3.641 25 O -0.292 6.292 26 C 0.041 3.959 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 -9.155 -16.459 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.014 3.986 4 N -0.339 5.339 5 C 0.144 3.856 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.413 3.587 15 O -0.452 6.452 16 N -0.346 5.346 17 C -0.034 4.034 18 C 0.150 3.850 19 O -0.200 6.200 20 C -0.069 4.069 21 C -0.317 4.317 22 C 0.017 3.983 23 N -0.287 5.287 24 C 0.179 3.821 25 O -0.197 6.197 26 C -0.054 4.054 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.235 0.765 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.909 -9.745 -15.306 20.214 hybrid contribution 0.117 1.722 -0.357 1.763 sum 9.026 -8.023 -15.662 19.777 Atomic orbital electron populations 1.23785 0.95809 1.01640 1.00908 1.23509 0.96475 0.99198 0.99575 1.20491 0.93129 0.95383 0.89556 1.47452 1.09057 1.63414 1.14023 1.19179 0.95089 0.93373 0.78000 1.21532 1.39871 0.93437 1.01114 0.92422 1.24924 0.95275 0.98605 0.95379 1.69951 1.42547 1.35909 1.05137 0.86468 0.77809 0.85266 0.78006 1.19882 1.21059 1.21002 1.15872 0.82878 0.77941 0.82025 1.90887 1.53109 1.62137 1.39108 1.42277 1.07194 1.70299 1.14787 1.16257 0.85997 0.88824 1.12288 1.19377 0.91891 0.84091 0.89657 1.86209 1.36882 1.15570 1.81367 1.23175 0.90949 0.93410 0.99383 1.21995 0.95753 0.99180 1.14748 1.22118 0.97601 0.88264 0.90340 1.67404 1.00418 1.38853 1.22009 1.19816 0.86235 0.87178 0.88876 1.86335 1.33204 1.19300 1.80903 1.22870 1.01052 0.79816 1.01689 0.88347 0.88880 0.87653 0.89310 0.91469 0.94921 0.93916 0.92910 0.76477 0.87763 0.92181 0.92439 0.83996 0.82002 0.92391 0.92216 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 29.01 0.42 -2.09 16 2 C -0.17 -2.55 9.85 -36.03 -0.35 -2.91 16 3 C 0.14 2.41 5.56 -5.20 -0.03 2.38 16 4 N -0.61 -13.77 2.44 -182.19 -0.44 -14.21 16 5 C 0.26 7.21 5.16 -5.20 -0.03 7.19 16 6 C -0.52 -15.25 9.39 -34.44 -0.32 -15.58 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 10 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.71 16.62 8.24 -86.92 -0.72 15.90 16 15 O -0.58 -16.29 15.91 5.27 0.08 -16.21 16 16 N -0.69 -12.77 4.67 -13.88 -0.06 -12.83 16 17 C 0.06 1.13 5.36 -83.11 -0.45 0.68 16 18 C 0.21 3.23 6.75 -38.73 -0.26 2.97 16 19 O -0.29 -4.59 10.30 -19.22 -0.20 -4.79 16 20 C 0.03 0.27 9.84 101.05 0.99 1.26 16 21 C -0.29 -3.54 9.10 -39.31 -0.36 -3.90 16 22 C 0.17 2.00 11.17 -17.57 -0.20 1.81 16 23 N -0.56 -8.04 9.21 -13.25 -0.12 -8.16 16 24 C 0.36 5.95 7.50 -17.01 -0.13 5.82 16 25 O -0.29 -4.70 10.22 -19.03 -0.19 -4.90 16 26 C 0.04 0.48 10.38 101.05 1.05 1.53 16 27 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 28 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.09 1.58 7.72 -51.93 -0.40 1.18 16 31 H 0.07 1.00 6.45 -51.93 -0.34 0.66 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.40 6.19 6.64 -40.82 -0.27 5.92 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 38 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 39 H 0.14 1.23 6.46 -52.49 -0.34 0.89 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -37.83 373.79 -5.93 -43.76 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.86 Total: 4.19 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -0.48 Total: 16.72 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.11 Total: -61.77 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.31 Total: -25.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.83 -5.93 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881084023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.049 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds