Wall clock time and date at job start Tue Mar 31 2020 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99776 * 2 1 4 4 N 1.46490 * 109.47088 * 125.00313 * 3 2 1 5 5 C 1.46503 * 120.00406 * 269.72434 * 4 3 2 6 6 C 1.50692 * 109.47243 * 270.28012 * 5 4 3 7 7 H 1.08002 * 120.00510 * 359.97438 * 6 5 4 8 8 C 1.37887 * 120.00153 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47210 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47061 * 119.99513 * 10 8 6 13 13 H 1.48493 * 109.47461 * 239.99852 * 10 8 6 14 14 C 1.34782 * 119.99874 * 90.00048 * 4 3 2 15 15 O 1.21608 * 119.99914 * 179.72305 * 14 4 3 16 16 N 1.34770 * 120.00179 * 359.72851 * 14 4 3 17 17 C 1.40430 * 120.00436 * 174.92449 * 16 14 4 18 18 C 1.39498 * 120.52268 * 273.62623 * 17 16 14 19 19 O 1.35835 * 120.83702 * 359.95335 * 18 17 16 20 20 C 1.42901 * 117.00241 * 179.97438 * 19 18 17 21 21 C 1.39258 * 118.32586 * 179.97438 * 18 17 16 22 22 C 1.37932 * 119.27536 * 0.02562 * 21 18 17 23 23 N 1.32040 * 121.00419 * 359.97438 * 22 21 18 24 24 C 1.32295 * 121.82859 * 359.72564 * 23 22 21 25 25 O 1.35773 * 119.68983 * 180.26838 * 24 23 22 26 26 C 1.42895 * 117.00369 * 0.27114 * 25 24 23 27 27 H 1.07992 * 120.00498 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99752 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00113 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46762 * 5.00184 * 3 2 1 31 31 H 1.09000 * 109.47168 * 245.00490 * 3 2 1 32 32 H 1.09000 * 109.46577 * 30.27584 * 5 4 3 33 33 H 1.08996 * 109.47390 * 150.27468 * 5 4 3 34 34 H 0.97004 * 119.99955 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99785 * 354.92113 * 16 14 4 36 36 H 1.08994 * 109.47326 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46796 * 300.00158 * 20 19 18 38 38 H 1.08999 * 109.46872 * 60.00254 * 20 19 18 39 39 H 1.08000 * 120.35718 * 180.02562 * 21 18 17 40 40 H 1.07994 * 119.49848 * 179.97438 * 22 21 18 41 41 H 1.09002 * 109.46600 * 300.00093 * 26 25 24 42 42 H 1.09002 * 109.47072 * 59.99712 * 26 25 24 43 43 H 1.08999 * 109.47192 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5608 1.8705 2.4232 6 6 2.8453 3.3495 2.4716 7 1 3.3033 3.8394 1.6251 8 6 2.5211 4.0775 3.5969 9 7 1.9630 3.4810 4.6276 10 14 2.8744 5.9106 3.6572 11 1 3.5018 6.3362 2.3803 12 1 1.6040 6.6533 3.8567 13 1 3.7989 6.1998 4.7828 14 6 4.2497 0.8662 0.9822 15 8 5.0235 0.8931 1.9199 16 7 4.6481 0.3709 -0.2062 17 6 5.9851 -0.0154 -0.3933 18 6 6.9437 0.9180 -0.7882 19 8 6.6053 2.2163 -1.0005 20 6 7.6520 3.1022 -1.4023 21 6 8.2561 0.4852 -0.9598 22 6 8.5637 -0.8407 -0.7364 23 7 7.6342 -1.7010 -0.3631 24 6 6.3761 -1.3341 -0.1822 25 8 5.4567 -2.2540 0.2074 26 6 5.9206 -3.5907 0.4071 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4910 1.7021 2.5468 33 1 3.1025 1.3697 3.2255 34 1 1.7351 3.9931 5.4193 35 1 4.0112 0.2812 -0.9323 36 1 7.2474 4.1053 -1.5370 37 1 8.4253 3.1229 -0.6344 38 1 8.0819 2.7543 -2.3416 39 1 9.0246 1.1801 -1.2644 40 1 9.5803 -1.1804 -0.8688 41 1 6.3407 -3.9723 -0.5235 42 1 6.6877 -3.5971 1.1816 43 1 5.0876 -4.2221 0.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881084023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:03 Heat of formation + Delta-G solvation = -51.520876 kcal Electronic energy + Delta-G solvation = -27944.644966 eV Core-core repulsion = 23991.494738 eV Total energy + Delta-G solvation = -3953.150228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.21211 -40.79638 -40.09419 -38.26124 -37.29196 -36.04241 -34.96726 -33.68424 -31.99159 -31.09999 -29.25529 -28.84118 -27.66322 -26.92981 -25.36233 -23.83774 -23.54237 -21.42053 -20.79706 -19.97730 -19.22286 -18.73612 -18.51724 -18.23560 -17.54561 -17.08526 -16.81521 -16.57151 -16.17299 -16.09183 -15.91776 -15.70876 -15.16600 -14.83896 -14.67247 -14.36589 -14.22026 -14.10690 -13.84925 -13.29677 -13.08130 -12.87607 -12.78703 -12.59243 -12.57051 -12.40377 -12.25097 -12.19944 -12.09560 -11.65454 -11.27830 -11.05688 -10.62961 -10.34614 -10.26155 -9.91916 -9.56442 -9.39157 -8.19385 -6.33882 -0.00618 0.24058 1.28552 1.36284 1.38901 1.51133 1.70313 1.91295 2.25053 2.41219 2.56476 2.68700 3.07499 3.11214 3.41799 3.74375 3.98264 4.06996 4.11110 4.22732 4.28947 4.35538 4.36922 4.40839 4.43423 4.62309 4.69707 4.76350 4.78464 4.93943 4.95344 5.05140 5.17262 5.21583 5.53260 5.55232 5.70004 5.75224 5.91959 6.07752 6.10220 6.15187 6.27860 6.74883 6.78868 7.12222 7.32961 7.75541 8.87837 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004676 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.586030 B = 5986.456906 C = 7267.341276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C 0.137 3.863 4 N -0.610 5.610 5 C 0.283 3.717 6 C -0.538 4.538 7 H 0.050 0.950 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.267 1.267 13 H -0.282 1.282 14 C 0.708 3.292 15 O -0.636 6.636 16 N -0.667 5.667 17 C 0.016 3.984 18 C 0.193 3.807 19 O -0.325 6.325 20 C 0.015 3.985 21 C -0.285 4.285 22 C 0.179 3.821 23 N -0.565 5.565 24 C 0.345 3.655 25 O -0.317 6.317 26 C 0.038 3.962 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.410 0.590 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.181 0.819 40 H 0.211 0.789 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -8.697 -18.486 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.206 4.206 3 C 0.015 3.985 4 N -0.344 5.344 5 C 0.161 3.839 6 C -0.577 4.577 7 H 0.069 0.931 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.192 1.192 13 H -0.208 1.208 14 C 0.411 3.589 15 O -0.516 6.516 16 N -0.323 5.323 17 C -0.081 4.081 18 C 0.137 3.863 19 O -0.235 6.235 20 C -0.078 4.078 21 C -0.306 4.306 22 C 0.024 3.976 23 N -0.293 5.293 24 C 0.166 3.834 25 O -0.224 6.224 26 C -0.057 4.057 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.198 0.802 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.075 -9.313 -17.420 22.174 hybrid contribution -0.198 1.523 0.224 1.552 sum 9.877 -7.790 -17.196 21.306 Atomic orbital electron populations 1.24037 0.95214 1.03011 0.97791 1.23311 0.96995 0.97994 1.02342 1.20714 0.92616 0.96680 0.88503 1.47312 1.10008 1.63148 1.13924 1.18598 0.93634 0.92470 0.79161 1.21722 1.40315 0.94307 1.01335 0.93150 1.25857 0.94694 1.03832 0.94735 1.70070 1.43049 1.38014 1.05748 0.85350 0.78264 0.78978 0.78085 1.19191 1.19185 1.20782 1.16055 0.82381 0.77779 0.82715 1.90821 1.54788 1.64596 1.41430 1.41870 1.08378 1.68817 1.13198 1.16729 0.85805 0.90183 1.15406 1.19631 0.92932 0.83971 0.89782 1.86153 1.39607 1.16101 1.81648 1.23509 0.90260 0.93011 1.01058 1.22400 0.94881 1.00069 1.13249 1.22997 0.98886 0.87899 0.87845 1.67516 0.99838 1.39542 1.22418 1.19932 0.87119 0.87047 0.89291 1.86287 1.34255 1.20854 1.80977 1.23096 1.01901 0.78345 1.02323 0.87961 0.86442 0.87467 0.89789 0.89053 0.95667 0.98892 0.92436 0.75088 0.87037 0.91530 0.89160 0.80178 0.77246 0.90852 0.92859 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 14.32 67.78 0.97 -3.24 16 2 C -0.19 -5.64 9.85 25.65 0.25 -5.39 16 3 C 0.14 4.85 5.56 85.64 0.48 5.33 16 4 N -0.61 -29.05 2.44 -848.57 -2.07 -31.12 16 5 C 0.28 16.38 5.16 85.63 0.44 16.82 16 6 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.44 5.46 84.66 0.46 0.91 16 9 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 10 Si 0.97 46.28 29.54 68.60 2.03 48.31 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 C 0.71 34.80 8.24 179.05 1.48 36.28 16 15 O -0.64 -38.15 15.91 -4.05 -0.06 -38.21 16 16 N -0.67 -25.61 4.67 -316.08 -1.48 -27.09 16 17 C 0.02 0.57 5.36 38.29 0.21 0.77 16 18 C 0.19 5.96 6.75 22.82 0.15 6.11 16 19 O -0.32 -10.15 10.30 -91.70 -0.94 -11.09 16 20 C 0.02 0.29 9.84 113.37 1.12 1.40 16 21 C -0.28 -6.11 9.10 22.44 0.20 -5.91 16 22 C 0.18 3.64 11.17 84.59 0.94 4.58 16 23 N -0.56 -15.53 9.21 -308.63 -2.84 -18.38 16 24 C 0.35 11.57 7.50 84.84 0.64 12.21 16 25 O -0.32 -10.48 10.22 -91.01 -0.93 -11.41 16 26 C 0.04 0.87 10.38 113.37 1.18 2.05 16 27 H 0.10 2.58 7.84 -2.91 -0.02 2.56 16 28 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.11 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.08 3.02 7.72 -2.38 -0.02 3.01 16 31 H 0.09 2.72 6.45 -2.39 -0.02 2.70 16 32 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 33 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.41 13.10 6.64 -92.71 -0.62 12.48 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.14 7.71 -2.39 -0.02 1.12 16 38 H 0.09 1.07 7.71 -2.39 -0.02 1.05 16 39 H 0.18 2.35 6.46 -2.91 -0.02 2.33 16 40 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 42 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16 43 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -87.46 373.79 3.15 -84.31 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.41 Total: 22.77 kcal Atomic # 6 Polarization: 30.81 SS G_CDS: 8.76 Total: 39.56 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -6.11 Total: -134.23 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -1.94 Total: -60.72 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -87.46 3.15 -84.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881084023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.787 kcal (2) G-P(sol) polarization free energy of solvation -87.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds