Wall clock time and date at job start Tue Mar 31 2020 13:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35837 * 117.00327 * 2 1 4 4 C 1.39304 * 120.83515 * 359.97438 * 3 2 1 5 5 C 1.37883 * 119.27801 * 180.02562 * 4 3 2 6 6 N 1.32068 * 121.00467 * 359.97438 * 5 4 3 7 7 C 1.32267 * 121.83396 * 359.71093 * 6 5 4 8 8 O 1.35758 * 119.69737 * 180.30891 * 7 6 5 9 9 C 1.42901 * 117.00150 * 0.26826 * 8 7 6 10 10 C 1.39199 * 120.60744 * 0.58155 * 7 6 5 11 11 N 1.40433 * 120.52447 * 179.70926 * 10 7 6 12 12 C 1.34778 * 119.99646 * 310.04542 * 11 10 7 13 13 O 1.21593 * 120.00378 * 7.47900 * 12 11 10 14 14 N 1.34777 * 119.99951 * 187.48129 * 12 11 10 15 15 C 1.46498 * 120.00404 * 184.12763 * 14 12 11 16 16 C 1.52995 * 109.47713 * 175.70197 * 15 14 12 17 17 C 1.50706 * 115.54872 * 54.18521 * 16 15 14 18 18 H 1.08000 * 119.99869 * 266.23437 * 17 16 15 19 19 C 1.37870 * 119.99885 * 86.23355 * 17 16 15 20 20 N 1.31519 * 119.99937 * 178.01775 * 19 17 16 21 21 Si 1.86801 * 120.00115 * 358.01273 * 19 17 16 22 22 H 1.48506 * 109.46750 * 89.94671 * 21 19 17 23 23 H 1.48497 * 109.47694 * 209.94678 * 21 19 17 24 24 H 1.48498 * 109.47342 * 329.94950 * 21 19 17 25 25 C 1.53006 * 117.49942 * 268.52094 * 16 15 14 26 26 C 1.52992 * 117.50270 * 199.86095 * 16 15 14 27 27 H 1.09002 * 109.47486 * 59.99862 * 1 2 3 28 28 H 1.08998 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47222 * 300.00225 * 1 2 3 30 30 H 1.08008 * 120.35944 * 0.04347 * 4 3 2 31 31 H 1.08000 * 119.49823 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47324 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47105 * 300.00041 * 9 8 7 34 34 H 1.09003 * 109.46819 * 60.00246 * 9 8 7 35 35 H 0.96999 * 120.00221 * 129.77923 * 11 10 7 36 36 H 0.97003 * 119.99955 * 4.12523 * 14 12 11 37 37 H 1.08997 * 109.47147 * 295.70709 * 15 14 12 38 38 H 1.09010 * 109.46887 * 55.69946 * 15 14 12 39 39 H 0.97002 * 119.99606 * 179.97438 * 20 19 17 40 40 H 1.08999 * 117.49336 * 359.97438 * 25 16 15 41 41 H 1.08992 * 117.50110 * 145.01774 * 25 16 15 42 42 H 1.09007 * 117.50213 * 214.98026 * 26 16 15 43 43 H 1.09004 * 117.49697 * 359.97357 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3041 2.3896 -0.0005 5 6 1.9633 3.6006 -0.0011 6 7 3.2828 3.6569 -0.0005 7 6 4.0278 2.5640 0.0061 8 8 5.3810 2.6725 0.0127 9 6 5.9260 3.9934 0.0180 10 6 3.4370 1.3036 0.0008 11 7 4.2297 0.1444 0.0018 12 6 5.2339 0.0140 -0.8877 13 8 5.5418 0.9510 -1.5988 14 7 5.8968 -1.1551 -0.9889 15 6 7.0461 -1.2699 -1.8902 16 6 7.6776 -2.6551 -1.7377 17 6 6.7394 -3.8206 -1.9185 18 1 6.2576 -4.2642 -1.0597 19 6 6.4963 -4.3205 -3.1801 20 7 5.7082 -5.3621 -3.3341 21 14 7.2861 -3.5184 -4.6709 22 1 8.5991 -4.1580 -4.9396 23 1 6.4017 -3.6886 -5.8515 24 1 7.4856 -2.0708 -4.4066 25 6 8.8060 -2.8085 -0.7158 26 6 9.1211 -2.8297 -2.2136 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2246 2.3556 -0.0003 31 1 1.3920 4.5171 -0.0019 32 1 7.0145 3.9374 0.0234 33 1 5.5937 4.5271 -0.8725 34 1 5.5853 4.5235 0.9075 35 1 4.0569 -0.5608 0.6451 36 1 5.6130 -1.9206 -0.4650 37 1 6.7156 -1.1326 -2.9197 38 1 7.7819 -0.5055 -1.6398 39 1 5.5369 -5.7136 -4.2219 40 1 9.0987 -1.9224 -0.1525 41 1 8.8701 -3.7524 -0.1747 42 1 9.3924 -3.7877 -2.6572 43 1 9.6208 -1.9578 -2.6358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881084159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:01 Heat of formation + Delta-G solvation = -24.624808 kcal Electronic energy + Delta-G solvation = -27608.588279 eV Core-core repulsion = 23656.604352 eV Total energy + Delta-G solvation = -3951.983927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13927 -39.28488 -38.95731 -37.16082 -37.09405 -34.58971 -33.30071 -32.11608 -30.99004 -29.83823 -27.99843 -26.82553 -26.42661 -25.14833 -23.18442 -22.60876 -21.66722 -20.42537 -19.29443 -18.92401 -18.08801 -17.42602 -17.20139 -16.45129 -16.17613 -16.03103 -15.55274 -15.18441 -15.05372 -14.75315 -14.39540 -14.08585 -13.99209 -13.68230 -13.31641 -13.10161 -13.00382 -12.77702 -12.32801 -12.19077 -11.80930 -11.79971 -11.52944 -11.13324 -11.04835 -10.68687 -10.49257 -10.21864 -10.12364 -9.71785 -9.63040 -9.52181 -9.13709 -8.82770 -8.64199 -8.57495 -8.22956 -7.82198 -6.14588 -4.19053 1.06552 1.24695 2.66331 3.07164 3.31156 3.41011 3.47079 3.52235 3.64190 3.87011 4.35341 4.42348 4.54977 4.64784 4.84374 4.90899 4.94090 4.99975 5.15139 5.25755 5.27967 5.36480 5.42978 5.60899 5.71199 5.74753 5.81474 6.02521 6.05913 6.12034 6.33693 6.47288 6.55403 6.64061 6.75374 7.01492 7.07808 7.11567 7.26896 7.41995 7.43799 7.70815 7.85825 8.42502 8.61186 8.85163 9.18671 9.49297 10.96549 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003928 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.971150 B = 7126.485072 C = 8280.076979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.178 3.822 4 C -0.288 4.288 5 C 0.160 3.840 6 N -0.553 5.553 7 C 0.362 3.638 8 O -0.268 6.268 9 C 0.044 3.956 10 C 0.067 3.933 11 N -0.678 5.678 12 C 0.701 3.299 13 O -0.577 6.577 14 N -0.714 5.714 15 C 0.175 3.825 16 C -0.016 4.016 17 C -0.490 4.490 18 H 0.078 0.922 19 C 0.082 3.918 20 N -0.895 5.895 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.255 1.255 25 C -0.177 4.177 26 C -0.193 4.193 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.406 0.594 36 H 0.403 0.597 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 15.389 9.469 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.122 3.878 4 C -0.310 4.310 5 C 0.004 3.996 6 N -0.281 5.281 7 C 0.181 3.819 8 O -0.173 6.173 9 C -0.052 4.052 10 C -0.032 4.032 11 N -0.329 5.329 12 C 0.401 3.599 13 O -0.454 6.454 14 N -0.367 5.367 15 C 0.051 3.949 16 C -0.018 4.018 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.121 4.121 20 N -0.532 5.532 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.179 1.179 25 C -0.215 4.215 26 C -0.231 4.231 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.242 0.758 36 H 0.238 0.762 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.919 16.404 8.625 20.154 hybrid contribution -0.611 -0.875 -0.457 1.161 sum -8.531 15.528 8.168 19.509 Atomic orbital electron populations 1.23157 0.77525 1.04538 1.01535 1.86115 1.21939 1.25480 1.87607 1.18955 0.90086 0.85382 0.93332 1.21893 1.01368 0.92212 1.15531 1.22096 0.88592 0.97114 0.91816 1.67454 1.08124 1.30143 1.22388 1.19516 0.85090 0.87591 0.89704 1.86513 1.14484 1.30258 1.86009 1.22799 0.98392 0.82289 1.01710 1.16437 0.86560 0.85960 1.14203 1.42163 1.34089 1.19413 1.37283 1.15936 0.79346 0.83957 0.80635 1.90890 1.68473 1.39397 1.46597 1.44937 1.33302 1.11011 1.47478 1.20974 0.85499 0.95839 0.92614 1.19620 0.87901 0.94026 1.00204 1.20158 1.25879 1.12223 0.94456 0.90412 1.24943 0.94232 0.94048 0.98884 1.69889 1.36767 1.23193 1.23353 0.86901 0.79019 0.81456 0.82121 1.20381 1.22127 1.17924 1.22847 1.06049 1.01218 0.91347 1.22945 1.01101 1.01564 0.97502 0.92264 0.87690 0.92359 0.84015 0.82147 0.88961 0.92457 0.92867 0.75845 0.76156 0.92203 0.93755 0.92531 0.90874 0.89497 0.89187 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -3.77 10.30 -19.23 -0.20 -3.97 16 3 C 0.18 2.39 6.74 -38.74 -0.26 2.13 16 4 C -0.29 -3.02 9.10 -39.32 -0.36 -3.37 16 5 C 0.16 1.74 11.16 -17.58 -0.20 1.54 16 6 N -0.55 -7.82 9.21 -13.25 -0.12 -7.94 16 7 C 0.36 5.95 6.93 -17.01 -0.12 5.83 16 8 O -0.27 -4.64 7.57 -42.53 -0.32 -4.96 16 9 C 0.04 0.57 10.38 101.05 1.05 1.62 16 10 C 0.07 1.09 6.07 -83.11 -0.50 0.58 16 11 N -0.68 -11.34 5.09 -13.88 -0.07 -11.41 16 12 C 0.70 14.13 8.04 -86.92 -0.70 13.43 16 13 O -0.58 -13.35 13.67 -18.26 -0.25 -13.60 16 14 N -0.71 -14.36 5.41 -65.22 -0.35 -14.72 16 15 C 0.17 3.82 5.35 -4.05 -0.02 3.80 16 16 C -0.02 -0.36 1.00 -155.66 -0.16 -0.52 16 17 C -0.49 -12.86 8.65 -34.44 -0.30 -13.16 16 18 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 19 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 20 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 21 Si 0.88 21.68 25.03 -169.99 -4.26 17.42 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.25 -6.12 5.47 56.52 0.31 -5.81 16 25 C -0.18 -3.47 9.92 -26.69 -0.26 -3.74 16 26 C -0.19 -4.02 7.71 -26.70 -0.21 -4.22 16 27 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 30 H 0.14 1.00 6.46 -52.48 -0.34 0.67 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.41 5.73 8.86 -40.82 -0.36 5.37 16 36 H 0.40 7.69 7.97 -40.82 -0.33 7.36 16 37 H 0.06 1.45 6.18 -51.93 -0.32 1.13 16 38 H 0.04 0.93 8.09 -51.92 -0.42 0.51 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 42 H 0.09 1.95 7.37 -51.93 -0.38 1.57 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -34.15 358.01 -6.52 -40.67 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.98 Total: 11.51 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.14 Total: 7.31 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.23 Total: -59.78 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.77 Total: -22.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.26 Total: 17.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.15 -6.52 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881084159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.041 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds