Wall clock time and date at job start Tue Mar 31 2020 13:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35837 * 117.00327 * 2 1 4 4 C 1.39304 * 120.83515 * 359.97438 * 3 2 1 5 5 C 1.37883 * 119.27801 * 180.02562 * 4 3 2 6 6 N 1.32068 * 121.00467 * 359.97438 * 5 4 3 7 7 C 1.32267 * 121.83396 * 359.71093 * 6 5 4 8 8 O 1.35758 * 119.69737 * 180.30891 * 7 6 5 9 9 C 1.42901 * 117.00150 * 0.26826 * 8 7 6 10 10 C 1.39199 * 120.60744 * 0.58155 * 7 6 5 11 11 N 1.40433 * 120.52447 * 179.70926 * 10 7 6 12 12 C 1.34778 * 119.99646 * 310.04542 * 11 10 7 13 13 O 1.21593 * 120.00378 * 7.47900 * 12 11 10 14 14 N 1.34777 * 119.99951 * 187.48129 * 12 11 10 15 15 C 1.46498 * 120.00404 * 184.12763 * 14 12 11 16 16 C 1.52995 * 109.47713 * 175.70197 * 15 14 12 17 17 C 1.50706 * 115.54872 * 54.18521 * 16 15 14 18 18 H 1.08000 * 119.99869 * 266.23437 * 17 16 15 19 19 C 1.37870 * 119.99885 * 86.23355 * 17 16 15 20 20 N 1.31519 * 119.99937 * 178.01775 * 19 17 16 21 21 Si 1.86801 * 120.00115 * 358.01273 * 19 17 16 22 22 H 1.48506 * 109.46750 * 89.94671 * 21 19 17 23 23 H 1.48497 * 109.47694 * 209.94678 * 21 19 17 24 24 H 1.48498 * 109.47342 * 329.94950 * 21 19 17 25 25 C 1.53006 * 117.49942 * 268.52094 * 16 15 14 26 26 C 1.52992 * 117.50270 * 199.86095 * 16 15 14 27 27 H 1.09002 * 109.47486 * 59.99862 * 1 2 3 28 28 H 1.08998 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47222 * 300.00225 * 1 2 3 30 30 H 1.08008 * 120.35944 * 0.04347 * 4 3 2 31 31 H 1.08000 * 119.49823 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47324 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47105 * 300.00041 * 9 8 7 34 34 H 1.09003 * 109.46819 * 60.00246 * 9 8 7 35 35 H 0.96999 * 120.00221 * 129.77923 * 11 10 7 36 36 H 0.97003 * 119.99955 * 4.12523 * 14 12 11 37 37 H 1.08997 * 109.47147 * 295.70709 * 15 14 12 38 38 H 1.09010 * 109.46887 * 55.69946 * 15 14 12 39 39 H 0.97002 * 119.99606 * 179.97438 * 20 19 17 40 40 H 1.08999 * 117.49336 * 359.97438 * 25 16 15 41 41 H 1.08992 * 117.50110 * 145.01774 * 25 16 15 42 42 H 1.09007 * 117.50213 * 214.98026 * 26 16 15 43 43 H 1.09004 * 117.49697 * 359.97357 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3041 2.3896 -0.0005 5 6 1.9633 3.6006 -0.0011 6 7 3.2828 3.6569 -0.0005 7 6 4.0278 2.5640 0.0061 8 8 5.3810 2.6725 0.0127 9 6 5.9260 3.9934 0.0180 10 6 3.4370 1.3036 0.0008 11 7 4.2297 0.1444 0.0018 12 6 5.2339 0.0140 -0.8877 13 8 5.5418 0.9510 -1.5988 14 7 5.8968 -1.1551 -0.9889 15 6 7.0461 -1.2699 -1.8902 16 6 7.6776 -2.6551 -1.7377 17 6 6.7394 -3.8206 -1.9185 18 1 6.2576 -4.2642 -1.0597 19 6 6.4963 -4.3205 -3.1801 20 7 5.7082 -5.3621 -3.3341 21 14 7.2861 -3.5184 -4.6709 22 1 8.5991 -4.1580 -4.9396 23 1 6.4017 -3.6886 -5.8515 24 1 7.4856 -2.0708 -4.4066 25 6 8.8060 -2.8085 -0.7158 26 6 9.1211 -2.8297 -2.2136 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2246 2.3556 -0.0003 31 1 1.3920 4.5171 -0.0019 32 1 7.0145 3.9374 0.0234 33 1 5.5937 4.5271 -0.8725 34 1 5.5853 4.5235 0.9075 35 1 4.0569 -0.5608 0.6451 36 1 5.6130 -1.9206 -0.4650 37 1 6.7156 -1.1326 -2.9197 38 1 7.7819 -0.5055 -1.6398 39 1 5.5369 -5.7136 -4.2219 40 1 9.0987 -1.9224 -0.1525 41 1 8.8701 -3.7524 -0.1747 42 1 9.3924 -3.7877 -2.6572 43 1 9.6208 -1.9578 -2.6358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881084159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:00 Heat of formation + Delta-G solvation = -51.219726 kcal Electronic energy + Delta-G solvation = -27609.741522 eV Core-core repulsion = 23656.604352 eV Total energy + Delta-G solvation = -3953.137169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20115 -40.68160 -39.99334 -38.78792 -38.16384 -35.91127 -34.94193 -34.21119 -31.95279 -30.93851 -28.79850 -28.32325 -27.62255 -26.99173 -24.29497 -23.59093 -23.29964 -21.86406 -21.11376 -19.90252 -19.48450 -18.73518 -18.41602 -17.94777 -17.44926 -17.00706 -16.91085 -16.52121 -16.36865 -15.96008 -15.86448 -15.56152 -15.18131 -14.86093 -14.75476 -14.68219 -14.19800 -14.12725 -13.99296 -13.74505 -13.08383 -12.70567 -12.61481 -12.54890 -12.35745 -12.16379 -12.05787 -11.97017 -11.58966 -11.47701 -11.13172 -10.95513 -10.68709 -10.67162 -10.36942 -9.86351 -9.73997 -9.04590 -8.29230 -6.34841 0.07638 0.26657 1.33605 1.39741 1.49810 1.65953 1.82782 2.21245 2.37279 2.61215 2.75564 3.04603 3.11569 3.41493 3.51195 3.78816 3.98545 4.05511 4.15158 4.35510 4.38428 4.41310 4.42528 4.43200 4.45645 4.59013 4.63815 4.73047 4.78387 4.84507 4.88949 4.94905 5.11011 5.21347 5.27968 5.45805 5.50375 5.65095 5.72499 6.00356 6.19192 6.30036 6.37032 6.73026 6.87126 7.12587 7.35906 7.66015 8.85122 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003928 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.971150 B = 7126.485072 C = 8280.076979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.178 3.822 4 C -0.275 4.275 5 C 0.164 3.836 6 N -0.566 5.566 7 C 0.341 3.659 8 O -0.299 6.299 9 C 0.043 3.957 10 C 0.023 3.977 11 N -0.667 5.667 12 C 0.700 3.300 13 O -0.609 6.609 14 N -0.715 5.715 15 C 0.186 3.814 16 C -0.040 4.040 17 C -0.475 4.475 18 H 0.048 0.952 19 C 0.031 3.969 20 N -0.942 5.942 21 Si 0.924 3.076 22 H -0.264 1.264 23 H -0.304 1.304 24 H -0.244 1.244 25 C -0.152 4.152 26 C -0.190 4.190 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.183 0.817 31 H 0.205 0.795 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.406 0.594 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 17.436 10.192 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.122 3.878 4 C -0.297 4.297 5 C 0.008 3.992 6 N -0.294 5.294 7 C 0.161 3.839 8 O -0.205 6.205 9 C -0.052 4.052 10 C -0.075 4.075 11 N -0.318 5.318 12 C 0.400 3.600 13 O -0.488 6.488 14 N -0.369 5.369 15 C 0.061 3.939 16 C -0.042 4.042 17 C -0.513 4.513 18 H 0.066 0.934 19 C -0.167 4.167 20 N -0.582 5.582 21 Si 0.750 3.250 22 H -0.190 1.190 23 H -0.232 1.232 24 H -0.167 1.167 25 C -0.189 4.189 26 C -0.228 4.228 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.200 0.800 31 H 0.222 0.778 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.252 0.748 36 H 0.242 0.758 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.670 18.459 9.392 22.453 hybrid contribution -0.566 -1.471 -0.569 1.675 sum -9.236 16.988 8.824 21.255 Atomic orbital electron populations 1.23513 0.75022 1.05978 1.03288 1.86094 1.24577 1.25492 1.87334 1.19145 0.89416 0.86729 0.92504 1.22316 1.03172 0.90792 1.13400 1.22926 0.87725 0.99077 0.89438 1.67517 1.09599 1.29350 1.22982 1.19714 0.85097 0.88340 0.90755 1.86443 1.15465 1.32160 1.86398 1.22932 0.99053 0.81189 1.02048 1.16850 0.87811 0.85546 1.17287 1.41925 1.33275 1.20120 1.36495 1.16053 0.79810 0.83339 0.80795 1.90852 1.69577 1.40304 1.48055 1.44863 1.33282 1.11309 1.47397 1.20735 0.86066 0.95583 0.91514 1.19464 0.88204 0.92715 1.03776 1.20304 1.25376 1.12526 0.93104 0.93423 1.25626 0.94988 0.94561 1.01537 1.70010 1.39180 1.25231 1.23747 0.86131 0.78554 0.81369 0.78901 1.18956 1.23151 1.16723 1.22876 1.02709 1.02387 0.90940 1.23006 0.99186 1.02078 0.98544 0.91088 0.86654 0.89860 0.80015 0.77815 0.87724 0.93056 0.91463 0.74840 0.75817 0.94909 0.92608 0.92729 0.88143 0.89560 0.90196 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 113.37 1.12 1.31 16 2 O -0.32 -7.69 10.30 -91.72 -0.94 -8.63 16 3 C 0.18 4.53 6.74 22.82 0.15 4.68 16 4 C -0.28 -4.87 9.10 22.44 0.20 -4.67 16 5 C 0.16 3.04 11.16 84.57 0.94 3.99 16 6 N -0.57 -15.23 9.21 -308.66 -2.84 -18.07 16 7 C 0.34 11.18 6.93 84.86 0.59 11.76 16 8 O -0.30 -10.48 7.57 -68.33 -0.52 -11.00 16 9 C 0.04 1.11 10.38 113.37 1.18 2.29 16 10 C 0.02 0.74 6.07 38.28 0.23 0.98 16 11 N -0.67 -22.69 5.09 -316.08 -1.61 -24.30 16 12 C 0.70 28.66 8.04 179.05 1.44 30.10 16 13 O -0.61 -28.68 13.67 18.50 0.25 -28.43 16 14 N -0.71 -29.03 5.41 -478.53 -2.59 -31.63 16 15 C 0.19 8.03 5.35 86.38 0.46 8.50 16 16 C -0.04 -1.77 1.00 -52.93 -0.05 -1.82 16 17 C -0.48 -25.30 8.65 25.60 0.22 -25.08 16 18 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 19 C 0.03 1.76 5.47 84.65 0.46 2.23 16 20 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 21 Si 0.92 44.81 25.03 68.60 1.72 46.53 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 24 H -0.24 -11.30 5.47 99.48 0.54 -10.75 16 25 C -0.15 -5.60 9.92 30.62 0.30 -5.30 16 26 C -0.19 -7.48 7.71 30.61 0.24 -7.25 16 27 H 0.07 0.74 7.71 -2.39 -0.02 0.72 16 28 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 0.64 7.71 -2.39 -0.02 0.63 16 30 H 0.18 1.66 6.46 -2.91 -0.02 1.64 16 31 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 35 H 0.41 12.01 8.86 -92.71 -0.82 11.19 16 36 H 0.41 15.78 7.97 -92.71 -0.74 15.04 16 37 H 0.03 1.59 6.18 -2.39 -0.01 1.57 16 38 H 0.06 2.28 8.09 -2.38 -0.02 2.26 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 3.32 7.37 -2.38 -0.02 3.30 16 43 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -76.51 358.01 0.59 -75.92 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.66 Total: 34.90 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 7.49 Total: 21.71 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.75 Total: -131.00 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.21 Total: -48.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.53 kcal Total: -76.51 0.59 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881084159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.702 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds