Wall clock time and date at job start Tue Mar 31 2020 13:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99570 * 2 1 4 4 C 1.53002 * 109.47188 * 269.99725 * 3 2 1 5 5 H 1.09000 * 109.52313 * 305.00566 * 4 3 2 6 6 C 1.53137 * 109.52330 * 184.87129 * 4 3 2 7 7 O 1.43073 * 109.14917 * 184.78676 * 6 4 3 8 8 C 1.43077 * 113.59206 * 57.95171 * 7 6 4 9 9 C 1.53137 * 109.15295 * 302.04619 * 8 7 6 10 10 O 1.43074 * 109.52027 * 65.13071 * 4 3 2 11 11 C 1.34771 * 120.00419 * 180.02562 * 2 1 3 12 12 O 1.21580 * 120.00248 * 180.02562 * 11 2 1 13 13 N 1.34780 * 120.00062 * 359.97438 * 11 2 1 14 14 C 1.39241 * 120.00286 * 185.19321 * 13 11 2 15 15 C 1.39681 * 119.57913 * 174.67888 * 14 13 11 16 16 C 1.38646 * 119.50238 * 180.02562 * 15 14 13 17 17 C 1.38358 * 118.66396 * 0.02562 * 16 15 14 18 18 C 1.40565 * 119.13379 * 359.97438 * 17 16 15 19 19 C 1.41337 * 119.78658 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99964 * 5.24304 * 19 18 17 21 21 C 1.40025 * 119.99828 * 184.97050 * 19 18 17 22 22 N 1.30747 * 120.00214 * 355.00803 * 21 19 18 23 23 Si 1.86807 * 119.99977 * 175.01205 * 21 19 18 24 24 H 1.48506 * 109.46981 * 94.99386 * 23 21 19 25 25 H 1.48500 * 109.47177 * 214.99564 * 23 21 19 26 26 H 1.48502 * 109.46982 * 334.99830 * 23 21 19 27 27 N 1.31908 * 119.57303 * 354.95535 * 14 13 11 28 28 H 1.09006 * 109.47208 * 269.99573 * 1 2 3 29 29 H 1.08997 * 109.47499 * 30.00283 * 1 2 3 30 30 H 1.09000 * 109.46718 * 150.00051 * 1 2 3 31 31 H 1.08996 * 109.47394 * 30.00169 * 3 2 1 32 32 H 1.09004 * 109.46805 * 150.00251 * 3 2 1 33 33 H 1.08999 * 109.52544 * 304.68497 * 6 4 3 34 34 H 1.08994 * 109.52570 * 64.82213 * 6 4 3 35 35 H 1.09004 * 109.52309 * 61.95417 * 8 7 6 36 36 H 1.09007 * 109.52339 * 182.07966 * 8 7 6 37 37 H 1.08999 * 109.53007 * 175.21045 * 9 8 7 38 38 H 1.09002 * 109.52812 * 295.34611 * 9 8 7 39 39 H 0.97002 * 119.99867 * 5.19372 * 13 11 2 40 40 H 1.08007 * 120.24837 * 359.97438 * 15 14 13 41 41 H 1.07994 * 120.66589 * 179.97438 * 16 15 14 42 42 H 1.08005 * 120.42858 * 180.02562 * 17 16 15 43 43 H 0.97001 * 119.99579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9642 0.9138 -1.9824 6 6 3.3217 2.9713 -1.4456 7 8 3.4624 3.4410 -2.7897 8 6 2.2154 3.7291 -3.4291 9 6 1.3461 2.4684 -3.4260 10 8 1.2053 1.9971 -2.0823 11 6 2.1389 -1.1671 -0.0005 12 8 3.3547 -1.1671 -0.0001 13 7 1.4651 -2.3344 -0.0005 14 6 2.1571 -3.5378 0.1081 15 6 1.4457 -4.7346 0.2196 16 6 2.1363 -5.9319 0.3282 17 6 3.5196 -5.9030 0.3232 18 6 4.1778 -4.6663 0.2081 19 6 5.5904 -4.6207 0.2009 20 1 6.1603 -5.5381 0.1982 21 6 6.2510 -3.3861 0.1916 22 7 5.5644 -2.2780 0.0909 23 14 8.1133 -3.3223 0.3228 24 1 8.7032 -3.2478 -1.0381 25 1 8.5139 -2.1234 1.1022 26 1 8.6035 -4.5450 1.0084 27 7 3.4762 -3.5324 0.1099 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 2.8477 3.7421 -0.8381 34 1 4.3042 2.7373 -1.0358 35 1 1.7041 4.5255 -2.8883 36 1 2.3971 4.0449 -4.4565 37 1 0.3631 2.7025 -3.8347 38 1 1.8195 1.6978 -4.0345 39 1 0.4981 -2.3362 -0.0762 40 1 0.3656 -4.7274 0.2220 41 1 1.6052 -6.8682 0.4158 42 1 4.0862 -6.8187 0.4057 43 1 6.0221 -1.4228 0.0840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:12 Heat of formation + Delta-G solvation = -40.209102 kcal Electronic energy + Delta-G solvation = -27994.566826 eV Core-core repulsion = 24041.907113 eV Total energy + Delta-G solvation = -3952.659713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17019 -39.42586 -37.78796 -36.15420 -34.91831 -34.08539 -33.05802 -32.00161 -30.24714 -29.19160 -28.56368 -26.69907 -25.77124 -25.14719 -23.42151 -21.73273 -21.26226 -20.93658 -19.02738 -18.08859 -17.08764 -16.85738 -16.45759 -16.28823 -15.94454 -15.51378 -15.33236 -14.85360 -14.60798 -14.41350 -14.00250 -13.70435 -13.54594 -13.11377 -12.99424 -12.77659 -12.54635 -12.21216 -12.07849 -11.87015 -11.86252 -11.69961 -11.45529 -11.13411 -10.90437 -10.74020 -10.61246 -10.47816 -10.41527 -9.90043 -9.63520 -9.27203 -9.03309 -8.97570 -8.12800 -7.90525 -7.17022 -6.89613 -6.07750 -4.34572 2.87544 3.12605 3.16713 3.20408 3.22810 3.31175 3.59271 3.63209 4.10525 4.19132 4.42993 4.57423 4.85907 4.89032 4.97886 4.99534 5.04760 5.20882 5.30613 5.33814 5.39176 5.54066 5.60962 5.74219 5.78251 5.92773 6.01392 6.07825 6.14875 6.49640 6.59215 6.83951 6.85352 6.89196 6.95445 7.01180 7.25665 7.39631 7.65943 7.76367 7.85690 8.20633 8.31911 8.65865 8.83235 9.10660 9.59591 10.31272 10.53725 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.004415 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.656501 B = 6340.139759 C = 8077.323333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.638 5.638 3 C 0.153 3.847 4 C 0.038 3.962 5 H 0.078 0.922 6 C 0.034 3.966 7 O -0.379 6.379 8 C 0.024 3.976 9 C 0.025 3.975 10 O -0.373 6.373 11 C 0.666 3.334 12 O -0.461 6.461 13 N -0.672 5.672 14 C 0.386 3.614 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.082 0.918 21 C 0.057 3.943 22 N -0.649 5.649 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.471 5.471 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 12.679 -3.144 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.029 3.971 4 C -0.021 4.021 5 H 0.096 0.904 6 C -0.043 4.043 7 O -0.297 6.297 8 C -0.053 4.053 9 C -0.052 4.052 10 O -0.292 6.292 11 C 0.366 3.634 12 O -0.325 6.325 13 N -0.322 5.322 14 C 0.146 3.854 15 C -0.384 4.384 16 C -0.060 4.060 17 C -0.330 4.330 18 C 0.147 3.853 19 C -0.457 4.457 20 H 0.100 0.900 21 C -0.172 4.172 22 N -0.267 5.267 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.190 5.190 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.060 13.739 -3.192 16.245 hybrid contribution -0.468 -0.737 -0.059 0.875 sum -8.527 13.002 -3.250 15.885 Atomic orbital electron populations 1.21603 0.80896 1.02642 1.00547 1.47101 1.05767 1.04617 1.80476 1.21071 0.98831 0.84558 0.92685 1.23397 0.85509 0.96775 0.96468 0.90392 1.23207 1.02010 0.95276 0.83853 1.88113 1.28507 1.85907 1.27183 1.23226 0.86142 0.96887 0.99022 1.23169 1.01081 0.95831 0.85112 1.88056 1.29144 1.85920 1.26115 1.16414 0.86518 0.80082 0.80397 1.91378 1.08350 1.83672 1.49135 1.42717 1.09198 1.03944 1.76298 1.18368 0.90951 0.82557 0.93490 1.20434 0.97415 0.92482 1.28097 1.20539 0.94092 0.95523 0.95837 1.21622 0.93856 0.98424 1.19127 1.18390 0.93469 0.85635 0.87852 1.19565 0.90078 0.93318 1.42709 0.90029 1.26179 0.99536 0.96060 0.95415 1.70360 1.35149 0.97642 1.23566 0.86548 0.84040 0.78781 0.78868 1.19810 1.20310 1.18736 1.68702 1.01780 1.28167 1.20328 0.93656 0.90721 0.92326 0.90505 0.87943 0.92268 0.87315 0.92387 0.88132 0.88167 0.92299 0.76997 0.89234 0.88655 0.88618 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.07 59.85 0.60 1.64 16 2 N -0.64 -10.09 2.84 -187.35 -0.53 -10.63 16 3 C 0.15 2.11 5.10 -4.04 -0.02 2.09 16 4 C 0.04 0.52 3.08 -26.66 -0.08 0.44 16 5 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 6 C 0.03 0.41 6.34 37.23 0.24 0.64 16 7 O -0.38 -4.93 10.85 -48.76 -0.53 -5.46 16 8 C 0.02 0.24 7.05 37.23 0.26 0.50 16 9 C 0.03 0.26 7.05 37.23 0.26 0.53 16 10 O -0.37 -4.78 9.33 -48.76 -0.45 -5.24 16 11 C 0.67 14.04 8.24 -86.92 -0.72 13.33 16 12 O -0.46 -11.74 11.68 5.30 0.06 -11.68 16 13 N -0.67 -13.91 5.26 -15.79 -0.08 -13.99 16 14 C 0.39 9.67 7.43 -155.00 -1.15 8.52 16 15 C -0.36 -8.23 9.95 -38.89 -0.39 -8.62 16 16 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 17 C -0.31 -7.87 9.83 -38.66 -0.38 -8.25 16 18 C 0.27 7.76 6.55 -85.00 -0.56 7.20 16 19 C -0.43 -11.89 9.13 -37.73 -0.34 -12.24 16 20 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 21 C 0.06 1.53 5.49 -17.34 -0.10 1.44 16 22 N -0.65 -18.11 9.01 55.55 0.50 -17.61 16 23 Si 0.89 19.48 29.56 -169.99 -5.03 14.46 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 27 N -0.47 -13.47 5.75 -10.26 -0.06 -13.53 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.80 7.12 -51.93 -0.37 0.43 16 30 H 0.06 0.66 6.29 -51.93 -0.33 0.34 16 31 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.10 1.56 7.42 -51.93 -0.39 1.17 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.39 6.54 6.39 -40.82 -0.26 6.28 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -34.29 351.81 -9.55 -43.83 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.96 Total: 8.54 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.77 Total: 5.99 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.17 Total: -55.75 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.92 Total: -22.37 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.29 -9.55 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.626 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds