Wall clock time and date at job start Tue Mar 31 2020 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99570 * 2 1 4 4 C 1.53002 * 109.47188 * 269.99725 * 3 2 1 5 5 H 1.09000 * 109.52313 * 305.00566 * 4 3 2 6 6 C 1.53137 * 109.52330 * 184.87129 * 4 3 2 7 7 O 1.43073 * 109.14917 * 184.78676 * 6 4 3 8 8 C 1.43077 * 113.59206 * 57.95171 * 7 6 4 9 9 C 1.53137 * 109.15295 * 302.04619 * 8 7 6 10 10 O 1.43074 * 109.52027 * 65.13071 * 4 3 2 11 11 C 1.34771 * 120.00419 * 180.02562 * 2 1 3 12 12 O 1.21580 * 120.00248 * 180.02562 * 11 2 1 13 13 N 1.34780 * 120.00062 * 359.97438 * 11 2 1 14 14 C 1.39241 * 120.00286 * 185.19321 * 13 11 2 15 15 C 1.39681 * 119.57913 * 174.67888 * 14 13 11 16 16 C 1.38646 * 119.50238 * 180.02562 * 15 14 13 17 17 C 1.38358 * 118.66396 * 0.02562 * 16 15 14 18 18 C 1.40565 * 119.13379 * 359.97438 * 17 16 15 19 19 C 1.41337 * 119.78658 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99964 * 5.24304 * 19 18 17 21 21 C 1.40025 * 119.99828 * 184.97050 * 19 18 17 22 22 N 1.30747 * 120.00214 * 355.00803 * 21 19 18 23 23 Si 1.86807 * 119.99977 * 175.01205 * 21 19 18 24 24 H 1.48506 * 109.46981 * 94.99386 * 23 21 19 25 25 H 1.48500 * 109.47177 * 214.99564 * 23 21 19 26 26 H 1.48502 * 109.46982 * 334.99830 * 23 21 19 27 27 N 1.31908 * 119.57303 * 354.95535 * 14 13 11 28 28 H 1.09006 * 109.47208 * 269.99573 * 1 2 3 29 29 H 1.08997 * 109.47499 * 30.00283 * 1 2 3 30 30 H 1.09000 * 109.46718 * 150.00051 * 1 2 3 31 31 H 1.08996 * 109.47394 * 30.00169 * 3 2 1 32 32 H 1.09004 * 109.46805 * 150.00251 * 3 2 1 33 33 H 1.08999 * 109.52544 * 304.68497 * 6 4 3 34 34 H 1.08994 * 109.52570 * 64.82213 * 6 4 3 35 35 H 1.09004 * 109.52309 * 61.95417 * 8 7 6 36 36 H 1.09007 * 109.52339 * 182.07966 * 8 7 6 37 37 H 1.08999 * 109.53007 * 175.21045 * 9 8 7 38 38 H 1.09002 * 109.52812 * 295.34611 * 9 8 7 39 39 H 0.97002 * 119.99867 * 5.19372 * 13 11 2 40 40 H 1.08007 * 120.24837 * 359.97438 * 15 14 13 41 41 H 1.07994 * 120.66589 * 179.97438 * 16 15 14 42 42 H 1.08005 * 120.42858 * 180.02562 * 17 16 15 43 43 H 0.97001 * 119.99579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9642 0.9138 -1.9824 6 6 3.3217 2.9713 -1.4456 7 8 3.4624 3.4410 -2.7897 8 6 2.2154 3.7291 -3.4291 9 6 1.3461 2.4684 -3.4260 10 8 1.2053 1.9971 -2.0823 11 6 2.1389 -1.1671 -0.0005 12 8 3.3547 -1.1671 -0.0001 13 7 1.4651 -2.3344 -0.0005 14 6 2.1571 -3.5378 0.1081 15 6 1.4457 -4.7346 0.2196 16 6 2.1363 -5.9319 0.3282 17 6 3.5196 -5.9030 0.3232 18 6 4.1778 -4.6663 0.2081 19 6 5.5904 -4.6207 0.2009 20 1 6.1603 -5.5381 0.1982 21 6 6.2510 -3.3861 0.1916 22 7 5.5644 -2.2780 0.0909 23 14 8.1133 -3.3223 0.3228 24 1 8.7032 -3.2478 -1.0381 25 1 8.5139 -2.1234 1.1022 26 1 8.6035 -4.5450 1.0084 27 7 3.4762 -3.5324 0.1099 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 2.8477 3.7421 -0.8381 34 1 4.3042 2.7373 -1.0358 35 1 1.7041 4.5255 -2.8883 36 1 2.3971 4.0449 -4.4565 37 1 0.3631 2.7025 -3.8347 38 1 1.8195 1.6978 -4.0345 39 1 0.4981 -2.3362 -0.0762 40 1 0.3656 -4.7274 0.2220 41 1 1.6052 -6.8682 0.4158 42 1 4.0862 -6.8187 0.4057 43 1 6.0221 -1.4228 0.0840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:11 Heat of formation + Delta-G solvation = -62.976766 kcal Electronic energy + Delta-G solvation = -27995.554106 eV Core-core repulsion = 24041.907113 eV Total energy + Delta-G solvation = -3953.646993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43830 -40.76254 -39.55307 -37.22323 -36.25977 -35.87435 -34.89551 -33.10703 -32.18512 -30.84767 -29.71149 -27.73164 -27.54551 -26.51417 -24.56318 -23.46034 -22.92542 -22.10895 -20.63400 -19.77328 -18.64381 -18.00212 -17.82381 -17.50658 -17.07154 -16.62516 -16.58930 -16.29827 -16.21751 -15.95562 -15.61351 -15.33086 -14.74909 -14.64508 -14.38455 -14.32462 -13.71682 -13.64213 -13.49825 -13.16815 -12.96056 -12.87626 -12.80750 -12.70149 -12.54358 -12.41272 -12.28571 -11.76111 -11.69544 -11.49051 -11.39648 -10.85691 -10.80394 -10.20549 -9.87670 -9.43897 -9.09159 -8.76055 -8.01355 -6.39340 0.97628 1.29311 1.39813 1.51027 1.55175 1.74372 2.27665 2.49280 2.65350 2.77344 3.04470 3.08073 3.62362 3.92094 3.93916 4.05972 4.08289 4.14317 4.25332 4.34928 4.36760 4.41768 4.55722 4.61230 4.69296 4.73514 4.78860 4.83605 4.88170 4.91945 4.97560 4.98694 5.08714 5.29447 5.63618 5.73719 5.84989 5.93479 5.97008 5.99412 6.07322 6.27220 6.41922 6.83662 7.06893 7.15122 7.98356 8.39288 8.59932 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.004415 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.656501 B = 6340.139759 C = 8077.323333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.630 5.630 3 C 0.152 3.848 4 C 0.050 3.950 5 H 0.028 0.972 6 C 0.038 3.962 7 O -0.404 6.404 8 C 0.022 3.978 9 C 0.020 3.980 10 O -0.377 6.377 11 C 0.657 3.343 12 O -0.512 6.512 13 N -0.662 5.662 14 C 0.364 3.636 15 C -0.347 4.347 16 C -0.033 4.033 17 C -0.331 4.331 18 C 0.238 3.762 19 C -0.467 4.467 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.683 5.683 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.255 1.255 27 N -0.506 5.506 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.038 0.962 39 H 0.414 0.586 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 13.740 -3.047 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.028 3.972 4 C -0.010 4.010 5 H 0.046 0.954 6 C -0.039 4.039 7 O -0.323 6.323 8 C -0.055 4.055 9 C -0.057 4.057 10 O -0.296 6.296 11 C 0.356 3.644 12 O -0.380 6.380 13 N -0.314 5.314 14 C 0.124 3.876 15 C -0.373 4.373 16 C -0.057 4.057 17 C -0.354 4.354 18 C 0.112 3.888 19 C -0.498 4.498 20 H 0.103 0.897 21 C -0.215 4.215 22 N -0.302 5.302 23 Si 0.793 3.207 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.179 1.179 27 N -0.225 5.225 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.057 0.943 39 H 0.253 0.747 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.122 0.878 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.323 14.828 -3.103 18.332 hybrid contribution -0.049 -1.058 -0.152 1.070 sum -10.372 13.770 -3.256 17.544 Atomic orbital electron populations 1.21849 0.77995 1.03823 1.02208 1.47079 1.07513 1.03493 1.78991 1.21200 0.98538 0.84427 0.92989 1.23081 0.85972 0.96237 0.95701 0.95423 1.23178 1.01602 0.94994 0.84156 1.88078 1.30622 1.85942 1.27658 1.23451 0.84945 0.96830 1.00244 1.23391 1.02935 0.95609 0.83715 1.88016 1.28298 1.86072 1.27227 1.16725 0.86301 0.81256 0.80083 1.91363 1.10737 1.84641 1.51228 1.42589 1.09997 1.02918 1.75901 1.18875 0.90650 0.84749 0.93332 1.20906 0.99435 0.91577 1.25369 1.21017 0.93277 0.97459 0.93942 1.21810 0.95428 0.97843 1.20356 1.18882 0.94380 0.86935 0.88601 1.19886 0.90706 0.94167 1.45024 0.89710 1.27027 1.04597 0.95272 0.94621 1.70565 1.36999 0.97912 1.24713 0.85361 0.77442 0.78966 0.78939 1.19303 1.19741 1.17887 1.68667 1.03697 1.28773 1.21386 0.91641 0.88943 0.91765 0.86693 0.90084 0.89507 0.87978 0.90437 0.86140 0.84949 0.94317 0.74701 0.85193 0.84434 0.87761 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 10.07 127.77 1.29 3.06 16 2 N -0.63 -19.60 2.84 -864.91 -2.46 -22.06 16 3 C 0.15 4.16 5.10 86.38 0.44 4.60 16 4 C 0.05 1.38 3.08 30.64 0.09 1.48 16 5 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 6 C 0.04 0.90 6.34 72.03 0.46 1.35 16 7 O -0.40 -10.28 10.85 -136.05 -1.48 -11.75 16 8 C 0.02 0.38 7.05 72.03 0.51 0.89 16 9 C 0.02 0.39 7.05 72.03 0.51 0.90 16 10 O -0.38 -9.10 9.33 -136.05 -1.27 -10.37 16 11 C 0.66 28.30 8.24 179.06 1.48 29.77 16 12 O -0.51 -27.50 11.68 -3.97 -0.05 -27.55 16 13 N -0.66 -27.27 5.26 -322.12 -1.69 -28.96 16 14 C 0.36 18.32 7.43 133.26 0.99 19.31 16 15 C -0.35 -15.29 9.95 22.72 0.23 -15.06 16 16 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 17 C -0.33 -17.17 9.83 22.87 0.22 -16.94 16 18 C 0.24 14.09 6.55 40.19 0.26 14.36 16 19 C -0.47 -27.28 9.13 23.47 0.21 -27.06 16 20 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 21 C 0.01 0.59 5.49 85.29 0.47 1.06 16 22 N -0.68 -40.28 9.01 21.84 0.20 -40.08 16 23 Si 0.97 41.71 29.56 68.60 2.03 43.74 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 N -0.51 -29.99 5.75 -186.37 -1.07 -31.06 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.09 1.67 7.12 -2.39 -0.02 1.66 16 30 H 0.06 1.29 6.29 -2.39 -0.02 1.27 16 31 H 0.12 2.25 8.07 -2.39 -0.02 2.23 16 32 H 0.08 2.58 7.42 -2.38 -0.02 2.56 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 13.01 6.39 -92.71 -0.59 12.42 16 40 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -79.73 351.81 2.04 -77.70 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.44 Total: 33.94 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.38 Total: 16.46 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.02 Total: -122.17 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.79 Total: -49.67 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -79.73 2.04 -77.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.720 kcal (2) G-P(sol) polarization free energy of solvation -79.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds