Wall clock time and date at job start Tue Mar 31 2020 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42909 * 109.47140 * 2 1 4 4 C 1.42898 * 113.99757 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.83652 * 32.19440 * 4 3 2 6 6 C 1.54994 * 110.90703 * 268.54223 * 4 3 2 7 7 O 1.44375 * 103.63244 * 204.86175 * 6 4 3 8 8 C 1.43738 * 106.97597 * 39.98401 * 7 6 4 9 9 C 1.54098 * 107.29478 * 333.48549 * 8 7 6 10 10 H 1.09001 * 110.48756 * 120.84125 * 9 8 7 11 11 N 1.46502 * 110.48843 * 243.35360 * 9 8 7 12 12 C 1.34773 * 119.99949 * 273.54332 * 11 9 8 13 13 O 1.21574 * 120.00046 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99914 * 180.02562 * 12 11 9 15 15 C 1.39240 * 120.00246 * 174.84840 * 14 12 11 16 16 C 1.39687 * 119.57968 * 185.33033 * 15 14 12 17 17 C 1.38643 * 119.49979 * 179.97438 * 16 15 14 18 18 C 1.38352 * 118.66866 * 0.02562 * 17 16 15 19 19 C 1.40576 * 119.13459 * 359.97438 * 18 17 16 20 20 C 1.41324 * 119.78929 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00413 * 0.02562 * 20 19 18 22 22 C 1.40030 * 120.00244 * 180.02562 * 20 19 18 23 23 N 1.30745 * 119.99945 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00416 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46765 * 60.00191 * 24 22 20 26 26 H 1.48504 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47078 * 300.00199 * 24 22 20 28 28 N 1.31908 * 119.57193 * 5.05884 * 15 14 12 29 29 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47079 * 300.00054 * 1 2 3 31 31 H 1.09001 * 109.46951 * 60.00495 * 1 2 3 32 32 H 1.09001 * 109.47079 * 239.99946 * 2 1 3 33 33 H 1.08998 * 109.47352 * 119.99816 * 2 1 3 34 34 H 1.09001 * 110.61699 * 86.27906 * 6 4 3 35 35 H 1.08998 * 110.61942 * 323.44388 * 6 4 3 36 36 H 1.09001 * 109.88073 * 92.91174 * 8 7 6 37 37 H 1.09005 * 109.88186 * 214.06273 * 8 7 6 38 38 H 0.97005 * 119.99596 * 93.54361 * 11 9 8 39 39 H 0.97003 * 120.00109 * 354.84521 * 14 12 11 40 40 H 1.08002 * 120.24834 * 359.95796 * 16 15 14 41 41 H 1.07995 * 120.66977 * 180.02562 * 17 16 15 42 42 H 1.08006 * 120.43383 * 179.97438 * 18 17 16 43 43 H 0.96994 * 120.00625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8852 0.6314 -0.5436 6 6 3.9800 1.5403 1.4466 7 8 5.2402 2.2281 1.2948 8 6 5.0362 3.2685 0.3242 9 6 3.8813 2.8200 -0.5922 10 1 3.0641 3.5405 -0.5564 11 7 4.3545 2.6513 -1.9684 12 6 4.3838 3.7074 -2.8051 13 8 4.0179 4.8002 -2.4178 14 7 4.8186 3.5521 -4.0713 15 6 4.7487 4.6160 -4.9669 16 6 5.0966 4.4151 -6.3048 17 6 5.0258 5.4754 -7.1952 18 6 4.6101 6.7090 -6.7267 19 6 4.2736 6.8474 -5.3689 20 6 3.8477 8.1014 -4.8754 21 1 3.7812 8.9494 -5.5409 22 6 3.5119 8.2445 -3.5235 23 7 3.5919 7.2178 -2.7179 24 14 2.9483 9.9017 -2.8714 25 1 1.7215 10.3262 -3.5926 26 1 2.6546 9.7887 -1.4200 27 1 4.0201 10.9075 -3.0832 28 7 4.3496 5.7993 -4.5422 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1346 0.5413 1.8544 35 1 3.3044 2.1126 2.0823 36 1 4.7705 4.1981 0.8275 37 1 5.9429 3.4093 -0.2643 38 1 4.6468 1.7794 -2.2773 39 1 5.1804 2.6992 -4.3587 40 1 5.4185 3.4411 -6.6429 41 1 5.2899 5.3411 -8.2338 42 1 4.5449 7.5546 -7.3955 43 1 3.3596 7.3169 -1.7814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:01 Heat of formation + Delta-G solvation = -48.850727 kcal Electronic energy + Delta-G solvation = -27485.964514 eV Core-core repulsion = 23532.930073 eV Total energy + Delta-G solvation = -3953.034442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25701 -39.12943 -37.65926 -37.40024 -34.37556 -33.77678 -32.96697 -31.75891 -30.27599 -29.64154 -28.79299 -28.08786 -25.47248 -23.44596 -22.93231 -22.17342 -21.36185 -20.86564 -19.80327 -18.18021 -17.51030 -17.19831 -16.58153 -16.19374 -15.85433 -15.38754 -15.08353 -14.67508 -14.48656 -14.40138 -13.99267 -13.93740 -13.62904 -13.05486 -12.99280 -12.88842 -12.74202 -12.43593 -12.18878 -11.90728 -11.72525 -11.65845 -11.43581 -11.09993 -10.93892 -10.92406 -10.62973 -10.42830 -10.07792 -9.91628 -9.75804 -9.61417 -9.14350 -8.99619 -8.53327 -7.92424 -7.19118 -6.92556 -6.07834 -4.35828 2.87544 2.99771 3.15881 3.19882 3.21557 3.30763 3.30982 4.01224 4.10320 4.11301 4.33811 4.59440 4.70366 4.75052 4.82850 4.91481 4.98491 5.08262 5.13342 5.30173 5.42179 5.46462 5.54269 5.65484 5.86104 5.90011 5.96611 6.07835 6.12513 6.49113 6.58468 6.66365 6.80261 6.86987 6.88930 6.99727 7.25950 7.35513 7.64365 7.74943 7.84477 8.19429 8.31502 8.64824 8.82504 9.09277 9.56524 10.29715 10.53182 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003819 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.842264 B = 7329.790550 C = 8245.275584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.366 6.366 4 C 0.051 3.949 5 H 0.081 0.919 6 C 0.029 3.971 7 O -0.374 6.374 8 C 0.039 3.961 9 C 0.144 3.856 10 H 0.114 0.886 11 N -0.750 5.750 12 C 0.665 3.335 13 O -0.458 6.458 14 N -0.672 5.672 15 C 0.387 3.613 16 C -0.358 4.358 17 C -0.036 4.036 18 C -0.307 4.307 19 C 0.271 3.729 20 C -0.425 4.425 21 H 0.081 0.919 22 C 0.057 3.943 23 N -0.649 5.649 24 Si 0.894 3.106 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.267 1.267 28 N -0.471 5.471 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.384 0.616 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -15.207 7.827 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.285 6.285 4 C -0.008 4.008 5 H 0.099 0.901 6 C -0.049 4.049 7 O -0.293 6.293 8 C -0.039 4.039 9 C 0.037 3.963 10 H 0.132 0.868 11 N -0.410 5.410 12 C 0.363 3.637 13 O -0.321 6.321 14 N -0.320 5.320 15 C 0.147 3.853 16 C -0.385 4.385 17 C -0.060 4.060 18 C -0.330 4.330 19 C 0.146 3.854 20 C -0.456 4.456 21 H 0.100 0.900 22 C -0.173 4.173 23 N -0.267 5.267 24 Si 0.719 3.281 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.192 1.192 28 N -0.190 5.190 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.217 0.783 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.072 -13.933 9.465 16.971 hybrid contribution 0.313 -0.614 -1.089 1.289 sum -1.759 -14.547 8.376 16.878 Atomic orbital electron populations 1.21748 0.93505 1.02224 1.03489 1.22553 0.95888 0.83588 1.00030 1.88002 1.19180 1.26532 1.94798 1.23880 0.82367 0.98175 0.96389 0.90075 1.23922 0.86619 0.98217 0.96162 1.88903 1.30390 1.48196 1.61813 1.23710 0.99467 0.90870 0.89881 1.21898 0.96888 0.96236 0.81271 0.86780 1.45288 1.73022 1.11296 1.11425 1.16411 0.81207 0.84971 0.81111 1.91399 1.46490 1.20874 1.73340 1.42528 1.65632 1.13942 1.09924 1.18327 0.93604 0.88158 0.85221 1.20423 1.25329 0.99326 0.93381 1.20537 0.95810 0.92907 0.96733 1.21621 1.16667 0.97041 0.97698 1.18373 0.88425 0.91580 0.86973 1.19542 1.37186 0.94700 0.94128 0.90047 1.26180 0.95963 0.97493 0.97617 1.70326 1.24381 1.27739 1.04271 0.86609 0.79933 0.83316 0.78252 1.19227 1.20414 1.19214 1.68687 1.19900 0.96046 1.34353 0.91094 0.91747 0.91568 0.93204 0.93351 0.88803 0.90882 0.90861 0.88769 0.78267 0.77235 0.89203 0.88650 0.88607 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.49 6.54 37.16 0.24 0.73 16 3 O -0.37 -4.40 10.11 -35.23 -0.36 -4.75 16 4 C 0.05 0.57 3.30 -24.63 -0.08 0.49 16 5 H 0.08 0.76 7.50 -51.93 -0.39 0.37 16 6 C 0.03 0.30 7.44 38.21 0.28 0.58 16 7 O -0.37 -4.94 11.52 -35.23 -0.41 -5.34 16 8 C 0.04 0.55 7.50 37.73 0.28 0.83 16 9 C 0.14 2.06 3.12 -66.30 -0.21 1.85 16 10 H 0.11 1.97 7.61 -51.93 -0.39 1.58 16 11 N -0.75 -11.13 5.05 -57.09 -0.29 -11.42 16 12 C 0.66 13.54 8.52 -86.92 -0.74 12.80 16 13 O -0.46 -11.58 11.81 5.30 0.06 -11.51 16 14 N -0.67 -13.32 5.39 -15.79 -0.09 -13.41 16 15 C 0.39 9.52 7.43 -155.00 -1.15 8.37 16 16 C -0.36 -8.11 9.95 -38.89 -0.39 -8.50 16 17 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 18 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 19 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 20 C -0.43 -11.83 9.14 -37.74 -0.34 -12.18 16 21 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 22 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 23 N -0.65 -18.16 8.98 55.55 0.50 -17.67 16 24 Si 0.89 19.51 29.56 -169.99 -5.02 14.49 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 N -0.47 -13.37 5.74 -10.26 -0.06 -13.43 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 38 H 0.38 4.39 8.38 -40.82 -0.34 4.05 16 39 H 0.39 5.98 8.71 -40.82 -0.36 5.63 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -33.89 360.28 -9.47 -43.36 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.09 Total: 10.96 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -3.15 Total: 3.29 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.07 Total: -55.92 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.70 Total: -21.61 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.89 -9.47 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.489 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds