Wall clock time and date at job start Tue Mar 31 2020 13:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42909 * 109.47140 * 2 1 4 4 C 1.42898 * 113.99757 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.83652 * 32.19440 * 4 3 2 6 6 C 1.54994 * 110.90703 * 268.54223 * 4 3 2 7 7 O 1.44375 * 103.63244 * 204.86175 * 6 4 3 8 8 C 1.43738 * 106.97597 * 39.98401 * 7 6 4 9 9 C 1.54098 * 107.29478 * 333.48549 * 8 7 6 10 10 H 1.09001 * 110.48756 * 120.84125 * 9 8 7 11 11 N 1.46502 * 110.48843 * 243.35360 * 9 8 7 12 12 C 1.34773 * 119.99949 * 273.54332 * 11 9 8 13 13 O 1.21574 * 120.00046 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99914 * 180.02562 * 12 11 9 15 15 C 1.39240 * 120.00246 * 174.84840 * 14 12 11 16 16 C 1.39687 * 119.57968 * 185.33033 * 15 14 12 17 17 C 1.38643 * 119.49979 * 179.97438 * 16 15 14 18 18 C 1.38352 * 118.66866 * 0.02562 * 17 16 15 19 19 C 1.40576 * 119.13459 * 359.97438 * 18 17 16 20 20 C 1.41324 * 119.78929 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00413 * 0.02562 * 20 19 18 22 22 C 1.40030 * 120.00244 * 180.02562 * 20 19 18 23 23 N 1.30745 * 119.99945 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00416 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46765 * 60.00191 * 24 22 20 26 26 H 1.48504 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47078 * 300.00199 * 24 22 20 28 28 N 1.31908 * 119.57193 * 5.05884 * 15 14 12 29 29 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47079 * 300.00054 * 1 2 3 31 31 H 1.09001 * 109.46951 * 60.00495 * 1 2 3 32 32 H 1.09001 * 109.47079 * 239.99946 * 2 1 3 33 33 H 1.08998 * 109.47352 * 119.99816 * 2 1 3 34 34 H 1.09001 * 110.61699 * 86.27906 * 6 4 3 35 35 H 1.08998 * 110.61942 * 323.44388 * 6 4 3 36 36 H 1.09001 * 109.88073 * 92.91174 * 8 7 6 37 37 H 1.09005 * 109.88186 * 214.06273 * 8 7 6 38 38 H 0.97005 * 119.99596 * 93.54361 * 11 9 8 39 39 H 0.97003 * 120.00109 * 354.84521 * 14 12 11 40 40 H 1.08002 * 120.24834 * 359.95796 * 16 15 14 41 41 H 1.07995 * 120.66977 * 180.02562 * 17 16 15 42 42 H 1.08006 * 120.43383 * 179.97438 * 18 17 16 43 43 H 0.96994 * 120.00625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8852 0.6314 -0.5436 6 6 3.9800 1.5403 1.4466 7 8 5.2402 2.2281 1.2948 8 6 5.0362 3.2685 0.3242 9 6 3.8813 2.8200 -0.5922 10 1 3.0641 3.5405 -0.5564 11 7 4.3545 2.6513 -1.9684 12 6 4.3838 3.7074 -2.8051 13 8 4.0179 4.8002 -2.4178 14 7 4.8186 3.5521 -4.0713 15 6 4.7487 4.6160 -4.9669 16 6 5.0966 4.4151 -6.3048 17 6 5.0258 5.4754 -7.1952 18 6 4.6101 6.7090 -6.7267 19 6 4.2736 6.8474 -5.3689 20 6 3.8477 8.1014 -4.8754 21 1 3.7812 8.9494 -5.5409 22 6 3.5119 8.2445 -3.5235 23 7 3.5919 7.2178 -2.7179 24 14 2.9483 9.9017 -2.8714 25 1 1.7215 10.3262 -3.5926 26 1 2.6546 9.7887 -1.4200 27 1 4.0201 10.9075 -3.0832 28 7 4.3496 5.7993 -4.5422 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1346 0.5413 1.8544 35 1 3.3044 2.1126 2.0823 36 1 4.7705 4.1981 0.8275 37 1 5.9429 3.4093 -0.2643 38 1 4.6468 1.7794 -2.2773 39 1 5.1804 2.6992 -4.3587 40 1 5.4185 3.4411 -6.6429 41 1 5.2899 5.3411 -8.2338 42 1 4.5449 7.5546 -7.3955 43 1 3.3596 7.3169 -1.7814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:00 Heat of formation + Delta-G solvation = -73.304221 kcal Electronic energy + Delta-G solvation = -27487.024897 eV Core-core repulsion = 23532.930073 eV Total energy + Delta-G solvation = -3954.094825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50752 -40.60639 -39.33129 -38.36101 -36.02164 -35.32200 -34.82925 -32.56764 -32.18162 -31.16026 -29.97377 -29.35986 -27.40005 -24.56122 -23.97930 -23.42241 -23.06374 -22.24633 -21.37216 -19.84528 -19.00845 -18.32071 -18.03608 -17.51925 -16.92761 -16.54325 -16.36726 -16.23446 -16.05015 -15.80418 -15.59473 -15.30541 -14.94399 -14.63946 -14.44510 -14.10889 -13.85105 -13.70061 -13.61874 -13.16635 -12.91300 -12.77158 -12.72046 -12.55410 -12.46832 -12.30036 -12.27284 -11.84174 -11.77912 -11.50548 -11.02725 -10.88807 -10.85861 -10.60767 -9.92058 -9.83538 -9.10277 -8.78270 -8.00940 -6.39498 0.98426 1.29973 1.39800 1.51290 1.54473 1.65477 2.27618 2.37515 2.52410 3.00254 3.04368 3.30469 3.40114 3.69508 3.82132 4.04160 4.09700 4.17888 4.20224 4.31473 4.36568 4.49274 4.60805 4.63393 4.69827 4.75017 4.76125 4.86517 4.88848 4.98416 5.02205 5.07647 5.26325 5.28355 5.57230 5.62474 5.69091 5.86084 5.93489 6.02569 6.19693 6.30983 6.42805 6.83317 7.08709 7.21716 7.98044 8.39132 8.59585 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003819 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.842264 B = 7329.790550 C = 8245.275584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.393 6.393 4 C 0.064 3.936 5 H 0.108 0.892 6 C 0.029 3.971 7 O -0.380 6.380 8 C 0.048 3.952 9 C 0.141 3.859 10 H 0.077 0.923 11 N -0.726 5.726 12 C 0.659 3.341 13 O -0.510 6.510 14 N -0.659 5.659 15 C 0.365 3.635 16 C -0.345 4.345 17 C -0.034 4.034 18 C -0.331 4.331 19 C 0.238 3.762 20 C -0.467 4.467 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.684 5.684 24 Si 0.971 3.029 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.260 1.260 28 N -0.507 5.507 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.406 0.594 39 H 0.418 0.582 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 -17.788 7.677 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.005 3.995 5 H 0.126 0.874 6 C -0.048 4.048 7 O -0.299 6.299 8 C -0.031 4.031 9 C 0.034 3.966 10 H 0.095 0.905 11 N -0.387 5.387 12 C 0.358 3.642 13 O -0.377 6.377 14 N -0.310 5.310 15 C 0.125 3.875 16 C -0.371 4.371 17 C -0.058 4.058 18 C -0.355 4.355 19 C 0.112 3.888 20 C -0.498 4.498 21 H 0.103 0.897 22 C -0.214 4.214 23 N -0.303 5.303 24 Si 0.792 3.208 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.184 1.184 28 N -0.226 5.226 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.255 0.745 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.647 -16.618 9.306 19.117 hybrid contribution 0.215 -0.028 -1.120 1.141 sum -1.432 -16.646 8.186 18.605 Atomic orbital electron populations 1.21788 0.93406 1.03473 1.02345 1.22813 0.96063 0.82207 1.01686 1.87988 1.19433 1.28910 1.94963 1.23794 0.82489 0.96577 0.96676 0.87390 1.24126 0.85389 0.99589 0.95743 1.88897 1.31889 1.47852 1.61296 1.23445 0.98732 0.90937 0.89957 1.21881 0.95926 0.97910 0.80886 0.90483 1.44917 1.71877 1.10913 1.10963 1.16668 0.80687 0.85365 0.81508 1.91394 1.48571 1.23366 1.74349 1.42347 1.65362 1.13939 1.09360 1.18831 0.93380 0.88309 0.87006 1.20910 1.22736 1.01080 0.92326 1.21024 0.94114 0.91774 0.98860 1.21808 1.17879 0.98824 0.96943 1.18857 0.89196 0.92207 0.88508 1.19869 1.39459 0.95227 0.95263 0.89675 1.27014 0.95614 1.01405 0.97410 1.70538 1.25775 1.29893 1.04100 0.85441 0.79563 0.78297 0.77464 1.18535 1.20000 1.18393 1.68647 1.21074 0.97350 1.35542 0.88637 0.92236 0.93385 0.92115 0.90978 0.85292 0.91158 0.92249 0.89775 0.75738 0.74481 0.84965 0.84454 0.87806 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.71 6.54 71.98 0.47 1.18 16 3 O -0.39 -8.94 10.11 -148.98 -1.51 -10.44 16 4 C 0.06 1.30 3.30 31.96 0.11 1.40 16 5 H 0.11 1.62 7.50 -2.39 -0.02 1.60 16 6 C 0.03 0.53 7.44 72.66 0.54 1.07 16 7 O -0.38 -9.55 11.52 -148.98 -1.72 -11.26 16 8 C 0.05 1.37 7.50 72.35 0.54 1.91 16 9 C 0.14 4.07 3.12 46.04 0.14 4.21 16 10 H 0.08 2.85 7.61 -2.39 -0.02 2.83 16 11 N -0.73 -21.15 5.05 -452.80 -2.29 -23.44 16 12 C 0.66 27.25 8.52 179.06 1.52 28.78 16 13 O -0.51 -27.06 11.81 -3.95 -0.05 -27.11 16 14 N -0.66 -25.65 5.39 -322.13 -1.74 -27.38 16 15 C 0.36 17.87 7.43 133.26 0.99 18.86 16 16 C -0.35 -14.78 9.95 22.72 0.23 -14.55 16 17 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 18 C -0.33 -17.00 9.83 22.87 0.22 -16.78 16 19 C 0.24 13.99 6.55 40.19 0.26 14.26 16 20 C -0.47 -27.19 9.14 23.46 0.21 -26.97 16 21 H 0.09 4.63 7.85 -2.91 -0.02 4.60 16 22 C 0.01 0.63 5.50 85.29 0.47 1.10 16 23 N -0.68 -40.41 8.98 21.84 0.20 -40.21 16 24 Si 0.97 41.75 29.56 68.60 2.03 43.78 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 28 N -0.51 -29.67 5.74 -186.37 -1.07 -30.74 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.58 7.93 -2.38 -0.02 2.56 16 38 H 0.41 8.36 8.38 -92.70 -0.78 7.59 16 39 H 0.42 11.67 8.71 -92.71 -0.81 10.86 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -78.63 360.28 0.01 -78.63 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.54 Total: 36.41 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 6.68 Total: 11.77 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -4.90 Total: -121.77 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -3.27 Total: -48.82 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -78.63 0.01 -78.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.323 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds