Wall clock time and date at job start Tue Mar 31 2020 13:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.46834 * 2 1 4 4 C 1.34238 * 116.99814 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99625 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46669 * 180.02562 * 6 4 3 8 8 N 1.46505 * 109.47160 * 180.02562 * 7 6 4 9 9 C 1.46500 * 119.99791 * 270.00219 * 8 7 6 10 10 C 1.34777 * 119.99916 * 89.99953 * 8 7 6 11 11 O 1.21568 * 120.00237 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99662 * 180.02562 * 10 8 7 13 13 C 1.39250 * 119.99978 * 183.66124 * 12 10 8 14 14 C 1.39689 * 119.57221 * 339.03991 * 13 12 10 15 15 C 1.38640 * 119.49200 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67474 * 359.74168 * 15 14 13 17 17 C 1.40577 * 119.13030 * 0.50004 * 16 15 14 18 18 C 1.41329 * 119.78722 * 179.77062 * 17 16 15 19 19 H 1.08004 * 120.00229 * 4.86671 * 18 17 16 20 20 C 1.40026 * 119.99925 * 184.86791 * 18 17 16 21 21 N 1.30741 * 120.00184 * 184.81816 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 4.81588 * 20 18 17 23 23 H 1.48501 * 109.47292 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47136 * 300.00002 * 22 20 18 25 25 H 1.48503 * 109.47143 * 59.99811 * 22 20 18 26 26 N 1.31900 * 119.57734 * 159.06345 * 13 12 10 27 27 H 1.09000 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47139 * 300.00283 * 1 2 3 29 29 H 1.08998 * 109.47058 * 59.99857 * 1 2 3 30 30 H 1.08999 * 109.47265 * 240.00447 * 2 1 3 31 31 H 1.08996 * 109.47383 * 119.99724 * 2 1 3 32 32 H 1.09004 * 109.46958 * 60.00535 * 6 4 3 33 33 H 1.08996 * 109.47339 * 300.00403 * 6 4 3 34 34 H 1.08997 * 109.47257 * 60.00208 * 7 6 4 35 35 H 1.08996 * 109.47512 * 300.00227 * 7 6 4 36 36 H 1.08992 * 109.47159 * 269.99709 * 9 8 7 37 37 H 1.09000 * 109.47494 * 30.00044 * 9 8 7 38 38 H 1.09001 * 109.46870 * 149.99408 * 9 8 7 39 39 H 0.97001 * 120.00583 * 3.65442 * 12 10 8 40 40 H 1.08002 * 120.25160 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.66512 * 179.97438 * 15 14 13 42 42 H 1.08005 * 120.43675 * 180.24671 * 16 15 14 43 43 H 0.97001 * 120.00183 * 354.98460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 7 6.0086 4.2113 0.0002 9 6 6.2886 4.8882 -1.2685 10 6 6.2660 4.8340 1.1675 11 8 6.0332 4.2725 2.2202 12 7 6.7807 6.0795 1.1675 13 6 7.1179 6.6935 2.3710 14 6 6.5423 6.2412 3.5607 15 6 6.8788 6.8540 4.7579 16 6 7.7852 7.8990 4.7369 17 6 8.3259 8.3114 3.5065 18 6 9.2493 9.3807 3.4685 19 1 9.5976 9.8265 4.3885 20 6 9.7127 9.8621 2.2379 21 7 10.6366 10.7864 2.2036 22 14 9.0107 9.1836 0.6453 23 1 9.6638 9.8528 -0.5083 24 1 9.2626 7.7217 0.5765 25 1 7.5480 9.4364 0.6017 26 7 7.9762 7.6950 2.3728 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5843 3.4701 0.8896 33 1 3.5851 3.4692 -0.8904 34 1 5.7846 2.3250 -0.8896 35 1 5.7845 2.3257 0.8903 36 1 7.3076 4.6633 -1.5831 37 1 5.5887 4.5403 -2.0282 38 1 6.1777 5.9647 -1.1381 39 1 6.9163 6.5484 0.3292 40 1 5.8399 5.4208 3.5478 41 1 6.4449 6.5199 5.6888 42 1 8.0707 8.3942 5.6533 43 1 10.9492 11.1907 3.0281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:48 Heat of formation + Delta-G solvation = -78.464654 kcal Electronic energy + Delta-G solvation = -26561.888801 eV Core-core repulsion = 22607.570203 eV Total energy + Delta-G solvation = -3954.318598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88477 -40.42726 -38.48364 -37.08866 -35.90465 -34.69904 -33.54421 -32.41628 -31.50038 -31.07192 -29.31361 -27.13024 -25.57046 -24.99890 -23.35139 -22.03820 -21.64158 -20.92967 -19.60046 -18.63068 -18.12509 -17.87708 -17.09122 -16.86211 -16.64872 -15.62082 -15.39512 -15.04615 -14.90804 -14.54628 -14.09742 -13.85820 -13.56982 -13.47161 -13.39903 -13.15763 -12.91668 -12.73076 -12.52745 -12.50785 -12.24183 -12.22633 -11.93962 -11.85195 -11.37577 -11.17585 -10.87432 -10.84984 -10.77176 -10.33329 -10.02174 -9.67475 -9.32990 -9.17098 -8.88728 -8.53635 -7.74258 -7.44123 -7.20865 -4.76391 1.93715 2.15449 2.42266 2.65855 2.69803 3.35879 3.49937 3.63923 3.86265 3.99475 4.38497 4.39288 4.53805 4.58436 4.63735 4.67401 4.69769 4.87215 4.88177 5.13235 5.22270 5.30344 5.37477 5.44069 5.49033 5.53570 5.58174 5.74052 5.86319 6.07622 6.14455 6.20779 6.44543 6.55191 6.68637 6.77790 7.16579 7.30180 7.44937 7.46132 7.63305 7.75930 7.84662 8.16650 8.33551 8.62538 8.70408 9.41557 10.00338 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.002693 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.462547 B =10395.048940 C =11188.910304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.508 6.508 6 C -0.134 4.134 7 C 0.148 3.852 8 N -0.633 5.633 9 C 0.073 3.927 10 C 0.711 3.289 11 O -0.559 6.559 12 N -0.664 5.664 13 C 0.400 3.600 14 C -0.312 4.312 15 C -0.035 4.035 16 C -0.279 4.279 17 C 0.274 3.726 18 C -0.477 4.477 19 H 0.083 0.917 20 C 0.042 3.958 21 N -0.807 5.807 22 Si 1.154 2.846 23 H -0.333 1.333 24 H -0.280 1.280 25 H -0.295 1.295 26 N -0.600 5.600 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.147 0.853 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 -15.510 -9.646 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.313 3.687 5 O -0.396 6.396 6 C -0.173 4.173 7 C 0.024 3.976 8 N -0.371 5.371 9 C -0.070 4.070 10 C 0.412 3.588 11 O -0.435 6.435 12 N -0.312 5.312 13 C 0.169 3.831 14 C -0.336 4.336 15 C -0.059 4.059 16 C -0.301 4.301 17 C 0.150 3.850 18 C -0.509 4.509 19 H 0.101 0.899 20 C -0.178 4.178 21 N -0.429 5.429 22 Si 0.990 3.010 23 H -0.267 1.267 24 H -0.208 1.208 25 H -0.223 1.223 26 N -0.326 5.326 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.239 0.761 40 H 0.165 0.835 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.264 -15.820 -11.183 24.664 hybrid contribution -0.267 -0.049 2.196 2.212 sum -15.531 -15.869 -8.987 23.954 Atomic orbital electron populations 1.21813 0.92578 1.03003 1.03626 1.23041 0.95415 0.80136 1.02685 1.86520 1.24633 1.32512 1.84002 1.23579 0.80551 0.92531 0.72052 1.90686 1.60327 1.43261 1.45348 1.21862 0.97601 0.91197 1.06605 1.21030 0.89435 0.81960 1.05160 1.47027 1.67927 1.17158 1.05013 1.21847 1.01968 0.97722 0.85505 1.15679 0.78529 0.80736 0.83841 1.90816 1.58055 1.65841 1.28755 1.42458 1.64594 1.14966 1.09219 1.17836 0.90691 0.90823 0.83786 1.21746 1.11532 1.09208 0.91164 1.20955 0.94711 0.93597 0.96666 1.21599 1.06579 1.03829 0.98122 1.18256 0.90132 0.90616 0.85986 1.20708 1.21032 1.12932 0.96233 0.89879 1.27767 0.91467 0.92877 1.05734 1.70642 1.19206 1.19417 1.33626 0.81863 0.74334 0.75145 0.69694 1.26664 1.20759 1.22335 1.65940 1.20503 1.15440 1.30686 0.90207 0.91355 0.91472 0.91203 0.91098 0.86822 0.87518 0.89358 0.88436 0.91891 0.90435 0.91142 0.76053 0.83536 0.87629 0.87725 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.42 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.36 -3.53 10.22 -39.28 -0.40 -3.93 16 4 C 0.47 5.00 7.96 36.00 0.29 5.29 16 5 O -0.51 -6.64 15.73 -18.75 -0.29 -6.93 16 6 C -0.13 -1.23 6.14 -27.88 -0.17 -1.40 16 7 C 0.15 1.59 4.70 -4.04 -0.02 1.57 16 8 N -0.63 -7.72 2.87 -187.36 -0.54 -8.26 16 9 C 0.07 0.62 10.24 59.85 0.61 1.23 16 10 C 0.71 12.12 8.18 -86.92 -0.71 11.41 16 11 O -0.56 -11.15 12.58 5.31 0.07 -11.09 16 12 N -0.66 -12.46 5.29 -15.79 -0.08 -12.54 16 13 C 0.40 9.24 7.51 -154.99 -1.16 8.08 16 14 C -0.31 -7.09 8.89 -38.89 -0.35 -7.44 16 15 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 16 C -0.28 -6.71 9.83 -38.66 -0.38 -7.09 16 17 C 0.27 7.25 6.40 -85.00 -0.54 6.70 16 18 C -0.48 -13.05 9.57 -37.74 -0.36 -13.41 16 19 H 0.08 2.27 8.05 -52.48 -0.42 1.84 16 20 C 0.04 1.15 5.52 -17.35 -0.10 1.06 16 21 N -0.81 -21.96 13.65 55.55 0.76 -21.20 16 22 Si 1.15 27.55 25.61 -169.99 -4.35 23.20 16 23 H -0.33 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.28 -6.59 6.60 56.52 0.37 -6.21 16 25 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 26 N -0.60 -15.24 4.54 -10.26 -0.05 -15.28 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.10 1.30 7.38 -51.93 -0.38 0.92 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 38 H 0.07 0.60 6.31 -51.93 -0.33 0.27 16 39 H 0.40 6.62 6.52 -40.82 -0.27 6.35 16 40 H 0.15 3.28 5.17 -52.92 -0.27 3.00 16 41 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 43 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -33.24 362.35 -8.03 -41.27 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.92 Total: 4.19 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.68 Total: 5.11 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.09 Total: -57.29 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.63 Total: -21.95 kcal Atomic # 14 Polarization: 27.55 SS G_CDS: -4.35 Total: 23.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.24 -8.03 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.191 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds