Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.46834 * 2 1 4 4 C 1.34238 * 116.99814 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99625 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46669 * 180.02562 * 6 4 3 8 8 N 1.46505 * 109.47160 * 180.02562 * 7 6 4 9 9 C 1.46500 * 119.99791 * 270.00219 * 8 7 6 10 10 C 1.34777 * 119.99916 * 89.99953 * 8 7 6 11 11 O 1.21568 * 120.00237 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99662 * 180.02562 * 10 8 7 13 13 C 1.39250 * 119.99978 * 183.66124 * 12 10 8 14 14 C 1.39689 * 119.57221 * 339.03991 * 13 12 10 15 15 C 1.38640 * 119.49200 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67474 * 359.74168 * 15 14 13 17 17 C 1.40577 * 119.13030 * 0.50004 * 16 15 14 18 18 C 1.41329 * 119.78722 * 179.77062 * 17 16 15 19 19 H 1.08004 * 120.00229 * 4.86671 * 18 17 16 20 20 C 1.40026 * 119.99925 * 184.86791 * 18 17 16 21 21 N 1.30741 * 120.00184 * 184.81816 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 4.81588 * 20 18 17 23 23 H 1.48501 * 109.47292 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47136 * 300.00002 * 22 20 18 25 25 H 1.48503 * 109.47143 * 59.99811 * 22 20 18 26 26 N 1.31900 * 119.57734 * 159.06345 * 13 12 10 27 27 H 1.09000 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47139 * 300.00283 * 1 2 3 29 29 H 1.08998 * 109.47058 * 59.99857 * 1 2 3 30 30 H 1.08999 * 109.47265 * 240.00447 * 2 1 3 31 31 H 1.08996 * 109.47383 * 119.99724 * 2 1 3 32 32 H 1.09004 * 109.46958 * 60.00535 * 6 4 3 33 33 H 1.08996 * 109.47339 * 300.00403 * 6 4 3 34 34 H 1.08997 * 109.47257 * 60.00208 * 7 6 4 35 35 H 1.08996 * 109.47512 * 300.00227 * 7 6 4 36 36 H 1.08992 * 109.47159 * 269.99709 * 9 8 7 37 37 H 1.09000 * 109.47494 * 30.00044 * 9 8 7 38 38 H 1.09001 * 109.46870 * 149.99408 * 9 8 7 39 39 H 0.97001 * 120.00583 * 3.65442 * 12 10 8 40 40 H 1.08002 * 120.25160 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.66512 * 179.97438 * 15 14 13 42 42 H 1.08005 * 120.43675 * 180.24671 * 16 15 14 43 43 H 0.97001 * 120.00183 * 354.98460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 7 6.0086 4.2113 0.0002 9 6 6.2886 4.8882 -1.2685 10 6 6.2660 4.8340 1.1675 11 8 6.0332 4.2725 2.2202 12 7 6.7807 6.0795 1.1675 13 6 7.1179 6.6935 2.3710 14 6 6.5423 6.2412 3.5607 15 6 6.8788 6.8540 4.7579 16 6 7.7852 7.8990 4.7369 17 6 8.3259 8.3114 3.5065 18 6 9.2493 9.3807 3.4685 19 1 9.5976 9.8265 4.3885 20 6 9.7127 9.8621 2.2379 21 7 10.6366 10.7864 2.2036 22 14 9.0107 9.1836 0.6453 23 1 9.6638 9.8528 -0.5083 24 1 9.2626 7.7217 0.5765 25 1 7.5480 9.4364 0.6017 26 7 7.9762 7.6950 2.3728 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5843 3.4701 0.8896 33 1 3.5851 3.4692 -0.8904 34 1 5.7846 2.3250 -0.8896 35 1 5.7845 2.3257 0.8903 36 1 7.3076 4.6633 -1.5831 37 1 5.5887 4.5403 -2.0282 38 1 6.1777 5.9647 -1.1381 39 1 6.9163 6.5484 0.3292 40 1 5.8399 5.4208 3.5478 41 1 6.4449 6.5199 5.6888 42 1 8.0707 8.3942 5.6533 43 1 10.9492 11.1907 3.0281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = -98.106808 kcal Electronic energy + Delta-G solvation = -26562.740549 eV Core-core repulsion = 22607.570203 eV Total energy + Delta-G solvation = -3955.170346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03714 -41.49692 -40.17449 -37.94198 -37.03143 -36.30009 -35.39629 -33.20111 -32.95972 -32.26749 -30.99842 -27.94943 -27.30612 -26.18772 -24.14641 -23.64541 -23.17882 -21.86676 -21.07891 -20.25599 -19.55317 -18.79636 -18.35439 -17.78097 -17.60685 -17.07459 -16.82933 -16.54035 -16.04658 -15.81327 -15.54580 -15.10718 -14.89007 -14.73349 -14.43337 -14.23657 -14.18877 -14.05801 -13.74396 -13.66217 -13.31673 -13.23627 -12.90311 -12.77919 -12.72484 -12.49629 -12.21773 -12.15929 -11.73372 -11.64565 -11.61591 -11.52897 -11.12865 -10.85982 -10.39263 -9.93218 -9.68588 -9.31062 -9.12502 -6.80222 0.59878 0.76272 1.12083 1.20337 1.56515 1.67017 1.74535 2.01587 2.07228 2.48611 2.69524 2.71780 3.56614 3.63708 3.89231 3.90918 4.01151 4.08070 4.09033 4.20543 4.34914 4.38944 4.43133 4.55985 4.63018 4.69275 4.71854 4.82112 4.85511 4.89984 4.92414 4.93520 5.15330 5.28283 5.36972 5.43376 5.45012 5.46942 5.60045 5.82029 5.90851 6.00668 6.42632 6.56283 6.66771 6.73426 7.31739 7.51483 7.96090 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.002693 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.462547 B =10395.048940 C =11188.910304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.473 3.527 5 O -0.538 6.538 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.619 5.619 9 C 0.062 3.938 10 C 0.707 3.293 11 O -0.592 6.592 12 N -0.661 5.661 13 C 0.392 3.608 14 C -0.308 4.308 15 C -0.028 4.028 16 C -0.295 4.295 17 C 0.258 3.742 18 C -0.508 4.508 19 H 0.067 0.933 20 C 0.011 3.989 21 N -0.829 5.829 22 Si 1.187 2.813 23 H -0.329 1.329 24 H -0.276 1.276 25 H -0.289 1.289 26 N -0.611 5.611 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.040 -17.197 -11.483 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.317 3.683 5 O -0.428 6.428 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.355 5.355 9 C -0.080 4.080 10 C 0.409 3.591 11 O -0.471 6.471 12 N -0.311 5.311 13 C 0.160 3.840 14 C -0.333 4.333 15 C -0.052 4.052 16 C -0.317 4.317 17 C 0.133 3.867 18 C -0.541 4.541 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.453 5.453 22 Si 1.019 2.981 23 H -0.262 1.262 24 H -0.204 1.204 25 H -0.217 1.217 26 N -0.337 5.337 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.173 0.827 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.444 -17.526 -13.073 27.971 hybrid contribution 0.241 0.257 2.790 2.812 sum -17.203 -17.269 -10.283 26.456 Atomic orbital electron populations 1.21831 0.90606 1.04345 1.03684 1.23293 0.96990 0.79169 1.02637 1.86520 1.24093 1.33806 1.83605 1.23795 0.80675 0.92656 0.71160 1.90677 1.60960 1.44272 1.46860 1.21781 0.96223 0.90578 1.07706 1.21108 0.90562 0.80895 1.04957 1.47049 1.66434 1.17274 1.04746 1.22206 1.03730 0.97709 0.84343 1.15853 0.78272 0.80135 0.84888 1.90771 1.59409 1.66324 1.30588 1.42394 1.64730 1.15632 1.08342 1.18143 0.89986 0.90262 0.85658 1.22089 1.10947 1.08815 0.91426 1.21352 0.93458 0.92261 0.98131 1.21760 1.07336 1.04835 0.97787 1.18431 0.90236 0.90630 0.87366 1.20698 1.22956 1.14518 0.95922 0.91497 1.28655 0.91356 0.92798 1.07669 1.70671 1.20478 1.20656 1.33466 0.81462 0.74142 0.74831 0.67663 1.26210 1.20371 1.21684 1.65948 1.21144 1.16135 1.30487 0.88247 0.91638 0.91012 0.90774 0.91717 0.87815 0.84168 0.86840 0.91409 0.91093 0.86503 0.90965 0.74742 0.82703 0.83983 0.86836 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 71.98 0.74 -0.51 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.36 -6.50 10.22 -51.49 -0.53 -7.03 16 4 C 0.47 9.24 7.96 71.24 0.57 9.81 16 5 O -0.54 -13.44 15.73 21.97 0.35 -13.09 16 6 C -0.12 -1.96 6.14 29.85 0.18 -1.78 16 7 C 0.15 2.83 4.70 86.38 0.41 3.23 16 8 N -0.62 -13.31 2.87 -864.94 -2.49 -15.80 16 9 C 0.06 0.81 10.24 127.77 1.31 2.11 16 10 C 0.71 22.73 8.18 179.06 1.46 24.20 16 11 O -0.59 -22.90 12.58 -3.93 -0.05 -22.95 16 12 N -0.66 -23.50 5.29 -322.13 -1.70 -25.20 16 13 C 0.39 17.54 7.51 133.26 1.00 18.54 16 14 C -0.31 -13.49 8.89 22.72 0.20 -13.29 16 15 C -0.03 -1.18 10.15 22.39 0.23 -0.95 16 16 C -0.29 -14.04 9.83 22.87 0.22 -13.81 16 17 C 0.26 13.72 6.40 40.19 0.26 13.97 16 18 C -0.51 -28.56 9.57 23.46 0.22 -28.33 16 19 H 0.07 3.83 8.05 -2.91 -0.02 3.81 16 20 C 0.01 0.63 5.52 85.29 0.47 1.10 16 21 N -0.83 -46.23 13.65 21.84 0.30 -45.93 16 22 Si 1.19 55.55 25.61 68.60 1.76 57.30 16 23 H -0.33 -14.97 7.11 99.48 0.71 -14.26 16 24 H -0.28 -12.60 6.60 99.48 0.66 -11.94 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 N -0.61 -30.56 4.54 -186.36 -0.85 -31.41 16 27 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 32 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.64 8.03 -2.39 -0.02 1.62 16 35 H 0.07 1.75 7.38 -2.39 -0.02 1.73 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.67 8.07 -2.39 -0.02 0.65 16 38 H 0.07 0.96 6.31 -2.39 -0.02 0.95 16 39 H 0.41 12.59 6.52 -92.71 -0.60 11.99 16 40 H 0.16 6.63 5.17 -9.77 -0.05 6.58 16 41 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.28 15.15 8.72 -92.71 -0.81 14.34 16 Total: -1.00 -72.93 362.35 4.82 -68.11 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.31 Total: 20.53 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.72 Total: 15.46 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.74 Total: -118.34 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.23 Total: -43.07 kcal Atomic # 14 Polarization: 55.55 SS G_CDS: 1.76 Total: 57.30 kcal Total: -72.93 4.82 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.998 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds