Wall clock time and date at job start Tue Mar 31 2020 13:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.46946 * 2 1 4 4 C 1.34638 * 117.00407 * 179.97438 * 3 2 1 5 5 O 1.21512 * 119.99297 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00298 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99860 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47001 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.47285 * 176.06008 * 9 8 7 11 11 O 1.21273 * 120.00157 * 5.88822 * 10 9 8 12 12 N 1.34776 * 120.00097 * 185.88251 * 10 9 8 13 13 C 1.37201 * 120.00051 * 4.92497 * 12 10 9 14 14 H 1.08003 * 119.99956 * 305.49599 * 13 12 10 15 15 C 1.38898 * 120.00244 * 125.49925 * 13 12 10 16 16 N 1.31406 * 120.00103 * 163.02807 * 15 13 12 17 17 Si 1.86801 * 119.99740 * 343.02160 * 15 13 12 18 18 H 1.48508 * 109.46629 * 93.87187 * 17 15 13 19 19 H 1.48492 * 109.47078 * 213.87397 * 17 15 13 20 20 H 1.48502 * 109.47091 * 333.87912 * 17 15 13 21 21 C 1.39433 * 119.99744 * 184.92531 * 12 10 9 22 22 C 1.39068 * 119.69532 * 185.00247 * 21 12 10 23 23 C 1.38370 * 119.09995 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49459 * 359.97438 * 23 22 21 25 25 C 1.38153 * 119.31084 * 0.25793 * 24 23 22 26 26 N 1.31887 * 120.84921 * 359.47045 * 25 24 23 27 27 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47165 * 299.99687 * 1 2 3 29 29 H 1.08998 * 109.47155 * 60.00651 * 1 2 3 30 30 H 1.08993 * 109.47391 * 240.00015 * 2 1 3 31 31 H 1.08998 * 109.47155 * 119.99349 * 2 1 3 32 32 H 0.97000 * 119.99636 * 0.02562 * 6 4 3 33 33 H 1.08999 * 109.46731 * 60.00379 * 7 6 4 34 34 H 1.08996 * 109.47174 * 300.00423 * 7 6 4 35 35 H 1.08999 * 109.47289 * 60.00574 * 8 7 6 36 36 H 1.08996 * 109.47484 * 300.00087 * 8 7 6 37 37 H 1.08997 * 109.46771 * 56.05899 * 9 8 7 38 38 H 1.09004 * 109.46955 * 296.06351 * 9 8 7 39 39 H 0.97000 * 119.99906 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.45101 * 0.04183 * 22 21 12 41 41 H 1.08005 * 120.75608 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.34686 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.57626 * 179.75190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5455 0.0005 5 8 4.0889 0.5819 0.0005 6 7 3.8638 2.7910 0.0000 7 6 5.3161 2.9829 0.0001 8 6 5.6326 4.4799 0.0001 9 6 7.1495 4.6804 -0.0005 10 6 7.4616 6.1514 -0.0981 11 8 6.5643 6.9660 -0.0534 12 7 8.7381 6.5618 -0.2350 13 6 9.7426 5.6397 -0.3871 14 1 9.8633 4.8482 0.3378 15 6 10.6043 5.7242 -1.4731 16 7 11.7464 5.0744 -1.4578 17 14 10.1396 6.7613 -2.9557 18 1 10.7202 8.1204 -2.8105 19 1 10.6685 6.1262 -4.1894 20 1 8.6607 6.8618 -3.0454 21 6 9.0377 7.9235 -0.2221 22 6 10.3401 8.3447 -0.4678 23 6 10.6238 9.6989 -0.4515 24 6 9.5911 10.5888 -0.1895 25 6 8.3215 10.0998 0.0508 26 7 8.0797 8.8036 0.0236 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2728 3.5602 -0.0003 33 1 5.7436 2.5208 -0.8897 34 1 5.7436 2.5215 0.8902 35 1 5.2051 4.9416 0.8901 36 1 5.2051 4.9417 -0.8898 37 1 7.5844 4.1593 -0.8533 38 1 7.5692 4.2803 0.9224 39 1 12.3484 5.1337 -2.2161 40 1 11.1195 7.6246 -0.6690 41 1 11.6259 10.0556 -0.6392 42 1 9.7791 11.6521 -0.1690 43 1 7.5157 10.7881 0.2591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:07 Heat of formation + Delta-G solvation = -64.315446 kcal Electronic energy + Delta-G solvation = -26417.795673 eV Core-core repulsion = 22464.090631 eV Total energy + Delta-G solvation = -3953.705042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47000 -40.14646 -38.32212 -37.15207 -35.55361 -35.12484 -32.74190 -32.42287 -31.65633 -31.48396 -29.63820 -26.85741 -25.38101 -23.71924 -22.95779 -22.31045 -21.42081 -21.32295 -19.33027 -18.73822 -18.16686 -16.85537 -16.83812 -16.38772 -16.08111 -15.55007 -15.47666 -15.02157 -14.76422 -14.51815 -14.07858 -13.88129 -13.83697 -13.67527 -13.12142 -13.01645 -12.92863 -12.45495 -12.35227 -12.25940 -11.87883 -11.84027 -11.69451 -11.54039 -11.31462 -11.06032 -10.69368 -10.64482 -10.62313 -10.54966 -10.27397 -9.68297 -9.32186 -9.22585 -9.21820 -8.73639 -8.22561 -7.27530 -6.69761 -4.57356 1.82613 2.02495 2.08114 2.78295 3.02251 3.13657 3.22934 3.59576 3.86412 3.99541 4.15460 4.52704 4.69050 4.74046 4.78060 4.99858 5.03960 5.20636 5.24914 5.33108 5.40376 5.43051 5.50264 5.66039 5.74537 5.76437 5.79475 5.83606 5.93544 6.04930 6.21572 6.22384 6.34790 6.41401 6.50379 6.55650 6.70150 6.89624 7.13235 7.35283 7.45380 7.91387 8.02731 8.27976 8.55376 8.75442 9.06361 9.48500 10.34889 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002658 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.371371 B =10530.250584 C =11486.835062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.375 6.375 4 C 0.645 3.355 5 O -0.574 6.574 6 N -0.706 5.706 7 C 0.135 3.865 8 C -0.117 4.117 9 C -0.118 4.118 10 C 0.498 3.502 11 O -0.518 6.518 12 N -0.409 5.409 13 C -0.368 4.368 14 H 0.113 0.887 15 C 0.087 3.913 16 N -0.846 5.846 17 Si 0.857 3.143 18 H -0.255 1.255 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.358 3.642 22 C -0.201 4.201 23 C -0.063 4.063 24 C -0.234 4.234 25 C 0.116 3.884 26 N -0.490 5.490 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.281 0.719 40 H 0.152 0.848 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.322 -2.395 1.516 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.289 6.289 4 C 0.397 3.603 5 O -0.463 6.463 6 N -0.365 5.365 7 C 0.013 3.987 8 C -0.155 4.155 9 C -0.158 4.158 10 C 0.288 3.712 11 O -0.393 6.393 12 N -0.123 5.123 13 C -0.495 4.495 14 H 0.130 0.870 15 C -0.124 4.124 16 N -0.478 5.478 17 Si 0.682 3.318 18 H -0.180 1.180 19 H -0.206 1.206 20 H -0.187 1.187 21 C 0.128 3.872 22 C -0.224 4.224 23 C -0.089 4.089 24 C -0.256 4.256 25 C -0.043 4.043 26 N -0.205 5.205 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.170 0.830 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.168 -3.037 1.600 13.608 hybrid contribution 0.831 0.999 -1.037 1.662 sum -12.336 -2.038 0.563 12.516 Atomic orbital electron populations 1.21830 0.92664 1.02989 1.03533 1.22924 0.94696 0.78845 1.02803 1.86232 1.22381 1.33146 1.87173 1.18125 0.80983 0.84584 0.76564 1.91006 1.59791 1.39766 1.55761 1.44768 1.08789 1.05186 1.77765 1.21485 0.76750 0.97305 1.03159 1.21576 0.96668 0.93171 1.04107 1.21296 0.94667 0.94454 1.05381 1.20949 0.82263 0.90885 0.77084 1.90664 1.45230 1.55545 1.47861 1.41579 1.07211 1.01539 1.61998 1.18987 1.09435 1.09853 1.11201 0.87002 1.25470 0.94256 0.95282 0.97406 1.69725 1.06966 1.39838 1.31320 0.87248 0.80915 0.81322 0.82317 1.17959 1.20611 1.18657 1.19267 0.89024 0.86704 0.92183 1.21956 0.97891 0.96890 1.05698 1.21268 0.98935 0.92712 0.95939 1.21795 0.94879 1.00007 1.08920 1.22482 0.95338 0.91400 0.95083 1.67706 1.34143 1.02152 1.16544 0.90060 0.91484 0.91475 0.91186 0.91190 0.75737 0.90749 0.90838 0.90590 0.90623 0.87995 0.88833 0.90879 0.83014 0.85756 0.86065 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.57 16 2 C 0.08 0.77 6.19 37.16 0.23 1.00 16 3 O -0.37 -4.49 10.27 -40.32 -0.41 -4.90 16 4 C 0.65 9.04 8.75 54.05 0.47 9.52 16 5 O -0.57 -9.80 16.13 -19.28 -0.31 -10.11 16 6 N -0.71 -8.66 5.56 -65.28 -0.36 -9.02 16 7 C 0.14 1.75 5.67 -4.04 -0.02 1.73 16 8 C -0.12 -1.66 4.63 -26.73 -0.12 -1.78 16 9 C -0.12 -2.03 4.58 -27.88 -0.13 -2.16 16 10 C 0.50 11.12 7.57 -10.99 -0.08 11.03 16 11 O -0.52 -12.46 14.29 5.56 0.08 -12.38 16 12 N -0.41 -9.83 2.10 -60.71 -0.13 -9.96 16 13 C -0.37 -9.01 8.01 -14.90 -0.12 -9.13 16 14 H 0.11 2.80 7.97 -52.48 -0.42 2.39 16 15 C 0.09 2.14 3.79 -17.49 -0.07 2.08 16 16 N -0.85 -21.60 13.96 55.49 0.77 -20.83 16 17 Si 0.86 19.92 24.82 -169.99 -4.22 15.70 16 18 H -0.25 -5.74 6.15 56.52 0.35 -5.40 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.36 8.56 6.05 -154.63 -0.94 7.62 16 22 C -0.20 -4.47 6.07 -39.23 -0.24 -4.70 16 23 C -0.06 -1.16 10.16 -39.32 -0.40 -1.56 16 24 C -0.23 -3.97 10.11 -39.40 -0.40 -4.37 16 25 C 0.12 2.19 11.18 -17.56 -0.20 1.99 16 26 N -0.49 -11.34 7.92 -12.33 -0.10 -11.44 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.41 4.13 8.58 -40.82 -0.35 3.78 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 36 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.10 1.76 7.85 -51.93 -0.41 1.35 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.15 3.56 4.81 -52.48 -0.25 3.30 16 41 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -31.77 361.49 -6.97 -38.73 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.11 Total: 8.07 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -1.63 Total: 10.68 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.19 Total: -51.24 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.65 Total: -27.39 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.22 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.77 -6.97 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.582 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds