Wall clock time and date at job start Tue Mar 31 2020 13:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.46946 * 2 1 4 4 C 1.34638 * 117.00407 * 179.97438 * 3 2 1 5 5 O 1.21512 * 119.99297 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00298 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99860 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47001 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.47285 * 176.06008 * 9 8 7 11 11 O 1.21273 * 120.00157 * 5.88822 * 10 9 8 12 12 N 1.34776 * 120.00097 * 185.88251 * 10 9 8 13 13 C 1.37201 * 120.00051 * 4.92497 * 12 10 9 14 14 H 1.08003 * 119.99956 * 305.49599 * 13 12 10 15 15 C 1.38898 * 120.00244 * 125.49925 * 13 12 10 16 16 N 1.31406 * 120.00103 * 163.02807 * 15 13 12 17 17 Si 1.86801 * 119.99740 * 343.02160 * 15 13 12 18 18 H 1.48508 * 109.46629 * 93.87187 * 17 15 13 19 19 H 1.48492 * 109.47078 * 213.87397 * 17 15 13 20 20 H 1.48502 * 109.47091 * 333.87912 * 17 15 13 21 21 C 1.39433 * 119.99744 * 184.92531 * 12 10 9 22 22 C 1.39068 * 119.69532 * 185.00247 * 21 12 10 23 23 C 1.38370 * 119.09995 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49459 * 359.97438 * 23 22 21 25 25 C 1.38153 * 119.31084 * 0.25793 * 24 23 22 26 26 N 1.31887 * 120.84921 * 359.47045 * 25 24 23 27 27 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47165 * 299.99687 * 1 2 3 29 29 H 1.08998 * 109.47155 * 60.00651 * 1 2 3 30 30 H 1.08993 * 109.47391 * 240.00015 * 2 1 3 31 31 H 1.08998 * 109.47155 * 119.99349 * 2 1 3 32 32 H 0.97000 * 119.99636 * 0.02562 * 6 4 3 33 33 H 1.08999 * 109.46731 * 60.00379 * 7 6 4 34 34 H 1.08996 * 109.47174 * 300.00423 * 7 6 4 35 35 H 1.08999 * 109.47289 * 60.00574 * 8 7 6 36 36 H 1.08996 * 109.47484 * 300.00087 * 8 7 6 37 37 H 1.08997 * 109.46771 * 56.05899 * 9 8 7 38 38 H 1.09004 * 109.46955 * 296.06351 * 9 8 7 39 39 H 0.97000 * 119.99906 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.45101 * 0.04183 * 22 21 12 41 41 H 1.08005 * 120.75608 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.34686 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.57626 * 179.75190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5455 0.0005 5 8 4.0889 0.5819 0.0005 6 7 3.8638 2.7910 0.0000 7 6 5.3161 2.9829 0.0001 8 6 5.6326 4.4799 0.0001 9 6 7.1495 4.6804 -0.0005 10 6 7.4616 6.1514 -0.0981 11 8 6.5643 6.9660 -0.0534 12 7 8.7381 6.5618 -0.2350 13 6 9.7426 5.6397 -0.3871 14 1 9.8633 4.8482 0.3378 15 6 10.6043 5.7242 -1.4731 16 7 11.7464 5.0744 -1.4578 17 14 10.1396 6.7613 -2.9557 18 1 10.7202 8.1204 -2.8105 19 1 10.6685 6.1262 -4.1894 20 1 8.6607 6.8618 -3.0454 21 6 9.0377 7.9235 -0.2221 22 6 10.3401 8.3447 -0.4678 23 6 10.6238 9.6989 -0.4515 24 6 9.5911 10.5888 -0.1895 25 6 8.3215 10.0998 0.0508 26 7 8.0797 8.8036 0.0236 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2728 3.5602 -0.0003 33 1 5.7436 2.5208 -0.8897 34 1 5.7436 2.5215 0.8902 35 1 5.2051 4.9416 0.8901 36 1 5.2051 4.9417 -0.8898 37 1 7.5844 4.1593 -0.8533 38 1 7.5692 4.2803 0.9224 39 1 12.3484 5.1337 -2.2161 40 1 11.1195 7.6246 -0.6690 41 1 11.6259 10.0556 -0.6392 42 1 9.7791 11.6521 -0.1690 43 1 7.5157 10.7881 0.2591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892470642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:06 Heat of formation + Delta-G solvation = -85.389169 kcal Electronic energy + Delta-G solvation = -26418.709498 eV Core-core repulsion = 22464.090631 eV Total energy + Delta-G solvation = -3954.618867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81381 -41.50270 -39.90883 -38.17870 -37.07618 -36.53753 -34.30853 -33.87932 -33.12111 -32.40215 -31.15555 -28.16473 -27.18602 -24.86166 -24.12910 -23.73873 -22.72080 -22.36711 -21.05265 -20.02728 -19.60456 -18.14853 -17.87244 -17.77242 -17.75159 -17.07263 -16.85112 -16.32800 -16.22953 -15.91276 -15.44881 -15.35356 -15.16674 -14.82693 -14.72569 -14.45808 -14.07758 -13.87265 -13.56498 -13.46669 -13.16273 -13.03987 -12.99750 -12.84223 -12.51774 -12.44441 -12.33593 -12.13297 -11.84258 -11.81350 -11.53840 -11.43776 -10.97702 -10.92043 -10.45317 -10.28696 -9.86119 -8.97449 -8.59716 -6.48724 0.26667 0.49264 1.10996 1.17382 1.25947 1.33979 1.68279 1.90953 2.08297 2.32027 2.72990 3.15191 3.21245 3.63093 3.88240 4.02484 4.04284 4.07632 4.10229 4.13868 4.29315 4.34782 4.37334 4.42476 4.57198 4.59639 4.62469 4.78555 4.87349 4.93702 4.97890 5.08913 5.14893 5.18890 5.20301 5.31232 5.37305 5.45576 5.48058 5.84200 6.03350 6.24319 6.33783 6.78191 6.99390 7.23985 7.33144 7.75145 8.47323 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002658 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.371371 B =10530.250584 C =11486.835062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 O -0.373 6.373 4 C 0.644 3.356 5 O -0.609 6.609 6 N -0.697 5.697 7 C 0.144 3.856 8 C -0.099 4.099 9 C -0.112 4.112 10 C 0.487 3.513 11 O -0.542 6.542 12 N -0.426 5.426 13 C -0.362 4.362 14 H 0.097 0.903 15 C 0.068 3.932 16 N -0.875 5.875 17 Si 0.899 3.101 18 H -0.243 1.243 19 H -0.273 1.273 20 H -0.291 1.291 21 C 0.325 3.675 22 C -0.226 4.226 23 C -0.061 4.061 24 C -0.209 4.209 25 C 0.105 3.895 26 N -0.523 5.523 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.419 0.581 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.134 0.866 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 -0.611 1.462 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 O -0.287 6.287 4 C 0.397 3.603 5 O -0.500 6.500 6 N -0.356 5.356 7 C 0.022 3.978 8 C -0.138 4.138 9 C -0.152 4.152 10 C 0.278 3.722 11 O -0.419 6.419 12 N -0.141 5.141 13 C -0.489 4.489 14 H 0.115 0.885 15 C -0.140 4.140 16 N -0.509 5.509 17 Si 0.724 3.276 18 H -0.167 1.167 19 H -0.199 1.199 20 H -0.217 1.217 21 C 0.097 3.903 22 C -0.249 4.249 23 C -0.087 4.087 24 C -0.230 4.230 25 C -0.054 4.054 26 N -0.239 5.239 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.256 0.744 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.151 0.849 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.881 -1.222 1.546 14.021 hybrid contribution 1.009 0.599 -0.944 1.506 sum -12.872 -0.623 0.603 12.901 Atomic orbital electron populations 1.21847 0.90041 1.04579 1.03736 1.23256 0.96688 0.77630 1.02665 1.86258 1.20954 1.34789 1.86745 1.18259 0.81476 0.84443 0.76128 1.90980 1.60725 1.40910 1.57429 1.44649 1.08659 1.05281 1.77048 1.21298 0.77276 0.96145 1.03092 1.21379 0.94367 0.93957 1.04063 1.21309 0.96867 0.91279 1.05758 1.21706 0.81654 0.92598 0.76264 1.90620 1.45520 1.56670 1.49092 1.41738 1.07494 1.01975 1.62847 1.18833 1.09562 1.09743 1.10737 0.88518 1.25725 0.94106 0.95716 0.98457 1.69752 1.07708 1.41258 1.32186 0.86639 0.78634 0.81347 0.80970 1.16728 1.19893 1.21698 1.19484 0.90044 0.86767 0.94054 1.21963 0.96854 0.98476 1.07619 1.21763 1.01188 0.91356 0.94397 1.22300 0.93250 1.02240 1.05250 1.23210 0.97541 0.90458 0.94164 1.67667 1.34788 1.03950 1.17539 0.87750 0.91201 0.91287 0.91455 0.91331 0.74397 0.91190 0.90631 0.90170 0.91099 0.88238 0.87725 0.90346 0.84879 0.82280 0.81027 0.80318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.07 1.29 6.19 71.98 0.45 1.73 16 3 O -0.37 -8.68 10.27 -55.48 -0.57 -9.25 16 4 C 0.64 17.84 8.75 129.79 1.14 18.97 16 5 O -0.61 -20.85 16.13 19.80 0.32 -20.53 16 6 N -0.70 -16.64 5.56 -590.86 -3.29 -19.93 16 7 C 0.14 3.69 5.67 86.38 0.49 4.19 16 8 C -0.10 -2.81 4.63 30.60 0.14 -2.67 16 9 C -0.11 -3.94 4.58 29.85 0.14 -3.80 16 10 C 0.49 22.22 7.57 87.65 0.66 22.88 16 11 O -0.54 -26.52 14.29 -3.01 -0.04 -26.56 16 12 N -0.43 -20.92 2.10 -464.38 -0.97 -21.90 16 13 C -0.36 -18.23 8.01 84.01 0.67 -17.56 16 14 H 0.10 5.05 7.97 -2.91 -0.02 5.02 16 15 C 0.07 3.44 3.79 84.91 0.32 3.76 16 16 N -0.88 -45.30 13.96 21.65 0.30 -45.00 16 17 Si 0.90 41.54 24.82 68.60 1.70 43.24 16 18 H -0.24 -10.62 6.15 99.48 0.61 -10.01 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 21 C 0.32 15.59 6.05 132.90 0.80 16.40 16 22 C -0.23 -9.88 6.07 22.50 0.14 -9.74 16 23 C -0.06 -2.09 10.16 22.44 0.23 -1.86 16 24 C -0.21 -6.20 10.11 22.39 0.23 -5.97 16 25 C 0.10 3.65 11.18 84.66 0.95 4.60 16 26 N -0.52 -23.91 7.92 -192.94 -1.53 -25.43 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.42 8.08 8.58 -92.71 -0.80 7.29 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 36 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 37 H 0.10 3.54 7.85 -2.39 -0.02 3.52 16 38 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 39 H 0.29 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.13 6.28 4.81 -2.91 -0.01 6.27 16 41 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.18 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -70.44 361.49 3.15 -67.28 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.14 Total: 27.98 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.09 Total: 30.10 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -5.49 Total: -112.26 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -0.29 Total: -56.35 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.70 Total: 43.24 kcal Total: -70.44 3.15 -67.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.105 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds