Wall clock time and date at job start Tue Mar 31 2020 13:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99944 * 2 1 4 4 O 1.21588 * 120.00283 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99471 * 180.02562 * 3 2 1 6 6 C 1.39977 * 119.99776 * 185.18010 * 5 3 2 7 7 C 1.38998 * 119.99816 * 213.03164 * 6 5 3 8 8 C 1.38237 * 120.24174 * 180.02562 * 7 6 5 9 9 C 1.38002 * 120.21946 * 359.69339 * 8 7 6 10 10 C 1.39643 * 119.99482 * 0.57640 * 9 8 7 11 11 C 1.47735 * 120.12266 * 179.72600 * 10 9 8 12 12 O 1.21592 * 119.99954 * 220.47486 * 11 10 9 13 13 N 1.34774 * 120.00185 * 40.46881 * 11 10 9 14 14 C 1.36871 * 119.99839 * 357.67666 * 13 11 10 15 15 H 1.08002 * 119.99990 * 52.44738 * 14 13 11 16 16 C 1.39050 * 120.00220 * 232.45519 * 14 13 11 17 17 N 1.31360 * 119.99968 * 198.98198 * 16 14 13 18 18 Si 1.86800 * 120.00078 * 18.97842 * 16 14 13 19 19 H 1.48498 * 109.46948 * 95.07288 * 18 16 14 20 20 H 1.48499 * 109.47167 * 215.07440 * 18 16 14 21 21 H 1.48497 * 109.47084 * 335.07202 * 18 16 14 22 22 C 1.46500 * 120.00191 * 177.68045 * 13 11 10 23 23 C 1.52998 * 109.46960 * 274.56228 * 22 13 11 24 24 O 1.42901 * 109.46911 * 65.96147 * 23 22 13 25 25 C 1.42903 * 113.99852 * 180.02562 * 24 23 22 26 26 C 1.38570 * 119.99598 * 33.05076 * 6 5 3 27 27 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47270 * 299.99938 * 1 2 3 29 29 H 1.09002 * 109.47539 * 59.99358 * 1 2 3 30 30 H 0.97006 * 119.99747 * 180.02562 * 2 1 3 31 31 H 0.96995 * 120.00581 * 5.18370 * 5 3 2 32 32 H 1.08001 * 119.88497 * 359.97438 * 7 6 5 33 33 H 1.07992 * 119.89071 * 179.97438 * 8 7 6 34 34 H 1.08006 * 120.00104 * 180.30465 * 9 8 7 35 35 H 0.97006 * 120.00271 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46982 * 154.56444 * 22 13 11 37 37 H 1.08997 * 109.47115 * 34.56448 * 22 13 11 38 38 H 1.08995 * 109.47177 * 185.96474 * 23 22 13 39 39 H 1.09009 * 109.47268 * 305.96618 * 23 22 13 40 40 H 1.08997 * 109.47283 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.47497 * 300.00024 * 25 24 23 42 42 H 1.09004 * 109.47407 * 60.00155 * 25 24 23 43 43 H 1.07999 * 120.11077 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.1866 2.3743 0.1089 7 6 5.4078 2.5305 -0.5362 8 6 6.1036 3.7204 -0.4311 9 6 5.5874 4.7637 0.3100 10 6 4.3640 4.6153 0.9668 11 6 3.8116 5.7283 1.7659 12 8 3.2722 5.5021 2.8319 13 7 3.9057 6.9943 1.3135 14 6 4.5548 7.2541 0.1368 15 1 4.2841 6.7158 -0.7595 16 6 5.5629 8.2109 0.0954 17 7 5.9275 8.7315 -1.0543 18 14 6.3986 8.7562 1.6745 19 1 7.6425 7.9698 1.8732 20 1 6.7348 10.1998 1.5837 21 1 5.4829 8.5325 2.8219 22 6 3.3133 8.0925 2.0812 23 6 1.8360 8.2353 1.7100 24 8 1.1229 7.0731 2.1378 25 6 -0.2738 7.1048 1.8372 26 6 3.6622 3.4135 0.8608 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3306 -0.0768 32 1 5.8151 1.7191 -1.1211 33 1 7.0522 3.8354 -0.9344 34 1 6.1317 5.6936 0.3858 35 1 6.6305 9.3993 -1.0832 36 1 3.8371 9.0204 1.8513 37 1 3.4014 7.8799 3.1466 38 1 1.4218 9.1165 2.1999 39 1 1.7415 8.3422 0.6293 40 1 -0.7430 6.1877 2.1933 41 1 -0.7321 7.9626 2.3294 42 1 -0.4117 7.1881 0.7591 43 1 2.7138 3.2937 1.3634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909562103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:35 Heat of formation + Delta-G solvation = -55.077632 kcal Electronic energy + Delta-G solvation = -27956.153101 eV Core-core repulsion = 24002.848641 eV Total energy + Delta-G solvation = -3953.304460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41856 -39.13506 -37.75588 -36.79658 -34.77567 -34.64304 -34.38523 -32.00556 -30.65275 -29.56371 -28.73398 -26.42418 -25.75912 -24.86071 -23.37777 -22.24175 -21.68380 -20.62652 -19.29502 -18.53011 -17.87334 -16.53578 -15.95394 -15.80459 -15.61887 -15.44045 -15.34953 -14.79055 -14.66788 -14.53518 -14.32181 -13.94440 -13.63141 -13.34928 -13.17010 -12.88924 -12.45721 -12.37677 -12.31760 -12.10981 -11.89945 -11.62674 -11.19352 -11.13176 -11.00374 -10.81690 -10.38384 -10.35879 -10.07497 -9.91490 -9.78230 -9.22174 -9.13978 -8.97771 -8.51543 -8.20376 -7.60355 -7.46473 -6.44343 -4.14289 1.71717 2.01009 2.66657 3.11348 3.22905 3.25519 3.32325 3.87368 4.15626 4.17221 4.44629 4.49493 4.66608 5.00224 5.03429 5.41754 5.43126 5.52077 5.66775 5.67690 5.78492 5.88101 6.00306 6.00649 6.04888 6.08122 6.10875 6.12535 6.15904 6.31505 6.37539 6.50542 6.64313 6.71244 6.93106 7.03790 7.13130 7.34052 7.48617 7.63046 7.87052 7.93550 8.19973 8.37922 8.59832 9.03233 9.41220 9.82573 10.64923 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.004956 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.691599 B = 5648.486162 C = 7244.249459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.751 5.751 3 C 0.696 3.304 4 O -0.561 6.561 5 N -0.683 5.683 6 C 0.134 3.866 7 C -0.139 4.139 8 C -0.121 4.121 9 C -0.066 4.066 10 C -0.077 4.077 11 C 0.536 3.464 12 O -0.567 6.567 13 N -0.464 5.464 14 C -0.340 4.340 15 H 0.098 0.902 16 C 0.072 3.928 17 N -0.859 5.859 18 Si 0.854 3.146 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.251 1.251 22 C 0.118 3.882 23 C 0.048 3.952 24 O -0.364 6.364 25 C 0.034 3.966 26 C -0.076 4.076 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.396 0.604 31 H 0.402 0.598 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.274 0.726 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 -13.636 0.511 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.407 5.407 3 C 0.396 3.604 4 O -0.436 6.436 5 N -0.331 5.331 6 C 0.040 3.960 7 C -0.160 4.160 8 C -0.140 4.140 9 C -0.085 4.085 10 C -0.081 4.081 11 C 0.325 3.675 12 O -0.449 6.449 13 N -0.186 5.186 14 C -0.468 4.468 15 H 0.116 0.884 16 C -0.136 4.136 17 N -0.493 5.493 18 Si 0.679 3.321 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.175 1.175 22 C -0.005 4.005 23 C -0.030 4.030 24 O -0.282 6.282 25 C -0.063 4.063 26 C -0.097 4.097 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.236 0.764 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.062 -12.775 1.042 13.781 hybrid contribution 0.768 -0.152 0.130 0.793 sum -4.294 -12.928 1.172 13.672 Atomic orbital electron populations 1.21400 0.77974 1.01793 1.02587 1.44901 1.07822 1.06907 1.81071 1.16006 0.81626 0.84517 0.78207 1.91031 1.67365 1.29775 1.55447 1.42456 1.04713 1.08578 1.77327 1.17208 0.93127 0.86287 0.99331 1.20781 0.95557 0.98732 1.00899 1.20863 1.00062 0.92564 1.00529 1.21829 0.94988 0.98602 0.93097 1.19838 0.95526 0.93866 0.98850 1.18363 0.80535 0.83567 0.84987 1.90658 1.46496 1.84620 1.23103 1.43358 1.49749 1.03837 1.21676 1.18970 1.15944 1.24681 0.87169 0.88420 1.25530 0.95952 0.95561 0.96547 1.69748 1.28683 1.25427 1.25440 0.87230 0.81239 0.78333 0.85331 1.19881 1.20730 1.17456 1.21695 0.90313 0.91552 0.96977 1.23018 0.93627 0.87334 0.99013 1.88165 1.18591 1.40600 1.80886 1.22627 0.83700 1.00986 0.99020 1.21100 1.00281 0.91623 0.96709 0.90756 0.92166 0.92289 0.77125 0.76380 0.86542 0.85867 0.83421 0.91552 0.90101 0.90964 0.94074 0.92730 0.90416 0.95157 0.94763 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.95 10.70 59.85 0.64 1.59 16 2 N -0.75 -7.53 5.72 -72.07 -0.41 -7.95 16 3 C 0.70 10.54 8.30 -86.92 -0.72 9.82 16 4 O -0.56 -11.52 14.00 5.29 0.07 -11.45 16 5 N -0.68 -9.21 5.35 -14.25 -0.08 -9.29 16 6 C 0.13 2.33 6.28 -83.73 -0.53 1.80 16 7 C -0.14 -2.16 9.95 -39.30 -0.39 -2.55 16 8 C -0.12 -2.11 10.02 -39.67 -0.40 -2.51 16 9 C -0.07 -1.40 8.14 -39.14 -0.32 -1.72 16 10 C -0.08 -1.79 5.35 -104.99 -0.56 -2.35 16 11 C 0.54 13.74 6.87 -12.38 -0.09 13.65 16 12 O -0.57 -15.58 15.46 -9.39 -0.15 -15.73 16 13 N -0.46 -11.61 1.86 -115.92 -0.22 -11.82 16 14 C -0.34 -8.80 6.41 -15.00 -0.10 -8.90 16 15 H 0.10 2.79 7.59 -52.49 -0.40 2.39 16 16 C 0.07 1.83 4.81 -17.45 -0.08 1.75 16 17 N -0.86 -22.98 13.95 55.50 0.77 -22.21 16 18 Si 0.85 19.47 26.54 -169.99 -4.51 14.96 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.25 -5.67 5.43 56.52 0.31 -5.37 16 22 C 0.12 2.69 3.89 -4.04 -0.02 2.67 16 23 C 0.05 0.99 6.28 37.16 0.23 1.23 16 24 O -0.36 -8.11 9.10 -49.91 -0.45 -8.56 16 25 C 0.03 0.58 11.01 101.05 1.11 1.70 16 26 C -0.08 -1.64 8.25 -38.96 -0.32 -1.96 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.40 2.42 8.85 -40.82 -0.36 2.06 16 31 H 0.40 3.57 8.83 -40.82 -0.36 3.21 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.15 3.35 5.94 -52.48 -0.31 3.03 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.08 1.76 5.36 -51.93 -0.28 1.48 16 37 H 0.07 1.68 7.41 -51.93 -0.38 1.29 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.14 3.22 6.38 -52.49 -0.34 2.89 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -34.95 357.84 -7.00 -41.95 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.89 Total: 10.46 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: -1.53 Total: 14.24 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.07 Total: -51.27 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.53 Total: -35.73 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.51 Total: 14.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.95 -7.00 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909562103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.128 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds